Wall clock time and date at job start Thu Apr 9 2020 12:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47266 * 2 1 4 4 N 1.46906 * 109.46958 * 119.99823 * 2 1 3 5 5 C 1.46902 * 110.99573 * 299.99941 * 4 2 1 6 6 C 1.50707 * 109.46656 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00358 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99768 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00203 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00034 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47238 * 60.00017 * 10 8 6 12 12 H 1.48494 * 109.47094 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46981 * 299.99863 * 10 8 6 14 14 C 1.50699 * 109.47163 * 239.99585 * 2 1 3 15 15 C 1.38246 * 119.97538 * 239.73047 * 14 2 1 16 16 C 1.38193 * 120.02523 * 179.72847 * 15 14 2 17 17 C 1.38458 * 119.97553 * 0.56587 * 16 15 14 18 18 F 1.35102 * 120.02872 * 179.68743 * 17 16 15 19 19 C 1.38460 * 119.94702 * 359.70511 * 17 16 15 20 20 C 1.38198 * 119.97307 * 0.02562 * 19 17 16 21 21 H 1.08997 * 109.47598 * 300.00446 * 1 2 3 22 22 H 1.09002 * 109.46781 * 60.00248 * 1 2 3 23 23 H 1.09000 * 109.47321 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47331 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47018 * 299.99607 * 3 2 1 26 26 H 1.08999 * 109.47836 * 59.99633 * 3 2 1 27 27 H 1.00896 * 111.00309 * 176.04353 * 4 2 1 28 28 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 29 29 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 30 30 H 0.96997 * 120.00560 * 179.97438 * 9 8 6 31 31 H 1.08001 * 119.98316 * 359.97438 * 15 14 2 32 32 H 1.08006 * 120.01403 * 180.25484 * 16 15 14 33 33 H 1.08000 * 120.01196 * 179.97438 * 19 17 16 34 34 H 1.08004 * 119.98599 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5485 -0.0262 2.4211 6 6 2.0691 -0.7636 3.6280 7 1 2.6883 -1.6392 3.5003 8 6 1.7557 -0.3196 4.8951 9 7 1.0030 0.7475 5.0506 10 14 2.4015 -1.2331 6.3911 11 1 3.8864 -1.2334 6.3681 12 1 1.9253 -0.5597 7.6259 13 1 1.9059 -2.6327 6.3685 14 6 2.0323 -0.7105 -1.2304 15 6 2.8317 -1.8312 -1.1029 16 6 3.2883 -2.4868 -2.2305 17 6 2.9546 -2.0140 -3.4883 18 9 3.4056 -2.6505 -4.5914 19 6 2.1585 -0.8882 -3.6148 20 6 1.6985 -0.2375 -2.4858 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.0261 -0.7626 1.1911 28 1 1.9120 1.0011 2.4379 29 1 0.4586 -0.0264 2.4379 30 1 0.7822 1.0596 5.9421 31 1 3.0961 -2.1967 -0.1216 32 1 3.9094 -3.3648 -2.1306 33 1 1.8979 -0.5183 -4.5955 34 1 1.0779 0.6409 -2.5842 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839515298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:11 Heat of formation + Delta-G solvation = -41.822433 kcal Electronic energy + Delta-G solvation = -16498.618309 eV Core-core repulsion = 13730.860579 eV Total energy + Delta-G solvation = -2767.757730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.83483 -40.72674 -37.96953 -34.99237 -32.66026 -31.85944 -30.03769 -28.31006 -28.03072 -24.82372 -23.67312 -23.02822 -20.24230 -18.98420 -18.43884 -17.23479 -16.96320 -16.53325 -16.41512 -15.69257 -15.34062 -15.20356 -14.46776 -14.41103 -14.28509 -14.06024 -13.87231 -13.39724 -13.06631 -12.96064 -12.82594 -12.56301 -12.38817 -12.12952 -12.07250 -11.73530 -11.48870 -11.22764 -10.60142 -9.98067 -9.48324 -9.02626 -8.18729 -6.28033 0.22671 0.36388 1.42535 1.45083 1.52841 2.41943 2.68687 3.15062 3.34003 3.48940 3.74081 3.91145 4.03883 4.18641 4.28028 4.44845 4.53528 4.72456 4.82033 4.86434 4.93524 5.05564 5.09089 5.19887 5.23007 5.29445 5.33711 5.37510 5.52733 5.61969 5.73100 6.00118 6.09982 6.52471 6.77228 6.94256 7.42038 8.92147 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040029 B = 0.005354 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.329085 B = 5228.862028 C = 5735.105861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.678 5.678 5 C 0.208 3.792 6 C -0.535 4.535 7 H 0.061 0.939 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.967 3.033 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.271 1.271 14 C -0.078 4.078 15 C -0.087 4.087 16 C -0.156 4.156 17 C 0.073 3.927 18 F -0.149 7.149 19 C -0.149 4.149 20 C -0.086 4.086 21 H 0.040 0.960 22 H 0.083 0.917 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.333 0.667 28 H -0.028 1.028 29 H 0.009 0.991 30 H 0.264 0.736 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -1.802 -15.919 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.052 3.948 3 C -0.228 4.228 4 N -0.309 5.309 5 C 0.081 3.919 6 C -0.574 4.574 7 H 0.080 0.920 8 C -0.194 4.194 9 N -0.573 5.573 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.196 1.196 14 C -0.079 4.079 15 C -0.106 4.106 16 C -0.174 4.174 17 C 0.054 3.946 18 F -0.128 7.128 19 C -0.168 4.168 20 C -0.104 4.104 21 H 0.060 0.940 22 H 0.101 0.899 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.151 0.849 28 H -0.011 1.011 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.786 -2.185 -15.821 16.071 hybrid contribution 0.798 0.380 1.008 1.341 sum 2.585 -1.805 -14.813 15.145 Atomic orbital electron populations 1.21829 0.93205 1.01851 1.01780 1.19808 0.95582 0.91125 0.88277 1.22467 1.00919 0.97041 1.02370 1.60807 1.15302 1.53362 1.01401 1.19254 0.94813 0.91303 0.86562 1.21567 1.31655 1.12504 0.91640 0.92040 1.25845 0.95421 0.95892 1.02238 1.70067 1.38505 1.25137 1.23555 0.85480 0.78866 0.78618 0.77890 1.19288 1.20978 1.19569 1.19933 0.97628 0.96029 0.94275 1.21083 0.96007 0.94554 0.98925 1.21293 1.03065 1.02291 0.90787 1.17907 0.99642 0.94504 0.82561 1.91462 1.87784 1.81424 1.52104 1.21297 0.99244 0.95235 1.01016 1.21025 0.99096 1.00120 0.90177 0.94044 0.89851 0.92990 0.93058 0.89895 0.93879 0.84949 1.01051 0.97316 0.92774 0.84629 0.83699 0.82542 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.05 71.98 0.58 -3.60 16 2 C 0.14 4.72 0.79 2.78 0.00 4.72 16 3 C -0.17 -5.28 8.04 71.98 0.58 -4.70 16 4 N -0.68 -27.66 5.09 -477.86 -2.43 -30.10 16 5 C 0.21 10.66 4.65 85.56 0.40 11.06 16 6 C -0.54 -29.91 9.32 25.60 0.24 -29.67 16 7 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 8 C 0.00 0.24 5.46 84.65 0.46 0.70 16 9 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 10 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 C -0.08 -2.18 4.77 -19.86 -0.09 -2.27 16 15 C -0.09 -2.46 9.14 22.26 0.20 -2.25 16 16 C -0.16 -3.87 10.03 22.31 0.22 -3.64 16 17 C 0.07 1.76 7.30 22.38 0.16 1.92 16 18 F -0.15 -3.65 17.27 44.97 0.78 -2.87 16 19 C -0.15 -3.15 10.03 22.31 0.22 -2.92 16 20 C -0.09 -1.93 8.71 22.26 0.19 -1.73 16 21 H 0.04 1.55 6.40 -2.39 -0.02 1.53 16 22 H 0.08 2.06 7.39 -2.39 -0.02 2.05 16 23 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.08 2.02 7.39 -2.39 -0.02 2.01 16 26 H 0.04 1.58 6.40 -2.39 -0.02 1.57 16 27 H 0.33 13.07 7.53 -89.70 -0.68 12.40 16 28 H -0.03 -1.54 6.30 -2.39 -0.02 -1.56 16 29 H 0.01 0.49 6.30 -2.38 -0.02 0.48 16 30 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.14 4.07 6.39 -2.91 -0.02 4.05 16 32 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.15 2.67 7.10 -2.91 -0.02 2.65 16 Total: -1.00 -61.79 282.53 4.26 -57.54 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.43 Total: 17.08 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 3.17 Total: -32.39 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -2.15 Total: -85.33 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -61.79 4.26 -57.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839515298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.714 kcal (2) G-P(sol) polarization free energy of solvation -61.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds