Wall clock time and date at job start Thu Apr 9 2020 12:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47205 * 269.99857 * 3 2 1 5 5 H 1.48498 * 109.47142 * 29.99727 * 3 2 1 6 6 H 1.48494 * 109.47182 * 149.99881 * 3 2 1 7 7 C 1.37879 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99670 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99706 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46625 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47098 * 180.02562 * 10 9 7 12 12 C 1.35315 * 125.87050 * 124.99686 * 11 10 9 13 13 C 1.35349 * 106.17541 * 179.97438 * 12 11 10 14 14 C 1.50698 * 126.75205 * 180.02562 * 13 12 11 15 15 H 1.09005 * 109.47412 * 244.99975 * 14 13 12 16 16 O 1.42896 * 109.47193 * 5.00249 * 14 13 12 17 17 C 1.53003 * 109.47204 * 125.00334 * 14 13 12 18 18 C 1.53001 * 117.51964 * 111.28411 * 17 14 13 19 19 C 1.52999 * 60.00190 * 107.47982 * 18 17 14 20 20 N 1.33774 * 106.49775 * 0.26442 * 13 12 11 21 21 N 1.28632 * 108.88522 * 359.56118 * 20 13 12 22 22 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46999 * 60.00409 * 9 7 2 24 24 H 1.08995 * 109.47326 * 299.99858 * 9 7 2 25 25 H 1.08999 * 109.47427 * 59.99892 * 10 9 7 26 26 H 1.09005 * 109.47018 * 299.99991 * 10 9 7 27 27 H 1.08000 * 126.90976 * 359.94755 * 12 11 10 28 28 H 0.96696 * 114.00050 * 59.99875 * 16 14 13 29 29 H 1.09002 * 115.54973 * 325.58194 * 17 14 13 30 30 H 1.09001 * 117.49733 * 214.97413 * 18 17 14 31 31 H 1.08995 * 117.49577 * 359.97438 * 18 17 14 32 32 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 33 33 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0215 -2.6364 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.2794 -3.2653 0.8984 13 6 7.5537 -3.0042 0.5245 14 6 8.8095 -3.4825 1.2064 15 1 9.3529 -2.6274 1.6086 16 8 8.4646 -4.3711 2.2710 17 6 9.6914 -4.2169 0.1945 18 6 11.0066 -3.5495 -0.2126 19 6 11.0225 -4.7808 0.6955 20 7 7.4791 -2.2337 -0.5665 21 7 6.2408 -2.0387 -0.8547 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6795 0.8895 24 1 3.8745 -0.6807 -0.8905 25 1 3.6579 -3.1505 -0.8896 26 1 3.6585 -3.1501 0.8904 27 1 5.9596 -3.8562 1.7440 28 1 7.9781 -5.1565 1.9856 29 1 9.1587 -4.7859 -0.5676 30 1 11.3392 -3.6794 -1.2425 31 1 11.2437 -2.5869 0.2402 32 1 11.2702 -4.6282 1.7460 33 1 11.3656 -5.7207 0.2631 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849141048.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:16 Heat of formation + Delta-G solvation = 40.488911 kcal Electronic energy + Delta-G solvation = -16212.529034 eV Core-core repulsion = 13468.260553 eV Total energy + Delta-G solvation = -2744.268481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.24650 -39.38518 -36.76756 -36.41834 -34.78971 -32.29556 -32.16784 -28.10034 -27.35145 -23.98406 -23.23035 -22.85159 -22.25674 -21.45641 -19.37658 -18.21956 -17.49167 -17.39261 -16.73271 -16.36614 -15.75327 -15.56724 -15.31158 -14.82487 -14.60497 -14.00699 -13.75329 -13.31368 -13.03169 -12.63854 -12.36232 -12.27770 -12.22131 -11.94338 -11.83818 -11.58630 -11.53865 -11.15953 -11.03230 -10.91270 -10.85916 -10.14127 -8.38955 -6.44393 0.68133 1.29382 1.32572 1.41536 1.47908 1.51264 2.26919 2.81036 2.96819 3.18480 3.49994 3.73524 3.82186 3.98712 4.06455 4.14106 4.15505 4.27854 4.47600 4.49030 4.70883 4.84489 4.89240 5.02897 5.05818 5.08261 5.24756 5.27235 5.32946 5.40730 5.71313 6.11106 6.62712 6.75757 7.21423 7.54082 8.76205 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.052110 B = 0.004698 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.198806 B = 5958.715128 C = 6165.691583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.022 3.978 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.531 4.531 8 H 0.058 0.942 9 C -0.015 4.015 10 C 0.131 3.869 11 N -0.281 5.281 12 C -0.030 4.030 13 C -0.072 4.072 14 C 0.240 3.760 15 H 0.109 0.891 16 O -0.550 6.550 17 C -0.190 4.190 18 C -0.174 4.174 19 C -0.150 4.150 20 N -0.289 5.289 21 N -0.126 5.126 22 H 0.270 0.730 23 H 0.018 0.982 24 H 0.019 0.981 25 H 0.101 0.899 26 H 0.131 0.869 27 H 0.228 0.772 28 H 0.393 0.607 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.009 -10.679 4.032 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.053 4.053 10 C 0.011 3.989 11 N -0.074 5.074 12 C -0.182 4.182 13 C -0.212 4.212 14 C 0.179 3.821 15 H 0.126 0.874 16 O -0.356 6.356 17 C -0.209 4.209 18 C -0.211 4.211 19 C -0.187 4.187 20 N -0.156 5.156 21 N -0.105 5.105 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.119 0.881 26 H 0.149 0.851 27 H 0.245 0.755 28 H 0.242 0.758 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 19.142 -9.237 3.114 21.481 hybrid contribution -0.825 0.028 0.221 0.854 sum 18.317 -9.209 3.334 20.771 Atomic orbital electron populations 1.69990 1.07766 1.28354 1.51506 1.25704 0.95414 1.02622 0.93967 0.85867 0.79142 0.79797 0.79068 1.19570 1.20307 1.18636 1.21101 0.90097 0.94200 1.51514 0.92386 1.19673 0.95409 0.92973 0.97240 1.22313 0.69805 1.00461 1.06283 1.47871 1.10343 1.31369 1.17811 1.23981 0.90004 1.04446 0.99777 1.23152 0.97074 1.03528 0.97459 1.19274 0.86427 0.91475 0.84927 0.87359 1.86582 1.78434 1.37081 1.33546 1.22741 0.90719 1.05318 1.02107 1.22983 0.99247 0.97856 1.00998 1.22950 0.97540 0.97838 1.00332 1.74942 1.09966 1.15915 1.14732 1.78308 0.96513 1.18852 1.16801 0.92104 0.96344 0.96290 0.88084 0.85146 0.75540 0.75751 0.88655 0.88451 0.88540 0.87818 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.05 13.96 21.45 0.30 -55.75 16 2 C 0.02 1.24 5.47 84.66 0.46 1.70 16 3 Si 0.94 44.25 27.47 68.60 1.88 46.13 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 7 C -0.53 -28.35 9.66 25.60 0.25 -28.10 16 8 H 0.06 3.25 7.99 -2.91 -0.02 3.23 16 9 C -0.01 -0.66 4.17 29.85 0.12 -0.53 16 10 C 0.13 4.48 6.39 86.38 0.55 5.03 16 11 N -0.28 -9.45 3.44 -347.73 -1.20 -10.65 16 12 C -0.03 -0.79 10.79 83.49 0.90 0.11 16 13 C -0.07 -2.00 6.43 41.60 0.27 -1.73 16 14 C 0.24 5.04 3.72 29.85 0.11 5.15 16 15 H 0.11 2.36 7.90 -2.38 -0.02 2.34 16 16 O -0.55 -9.47 12.72 -148.98 -1.89 -11.37 16 17 C -0.19 -3.57 5.35 -10.79 -0.06 -3.63 16 18 C -0.17 -3.02 10.18 30.59 0.31 -2.71 16 19 C -0.15 -2.16 10.16 30.60 0.31 -1.85 16 20 N -0.29 -10.35 12.40 -48.60 -0.60 -10.95 16 21 N -0.13 -4.92 12.91 37.02 0.48 -4.44 16 22 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 23 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 24 H 0.02 0.90 7.55 -2.39 -0.02 0.88 16 25 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 26 H 0.13 3.68 8.07 -2.38 -0.02 3.66 16 27 H 0.23 3.82 7.94 -2.91 -0.02 3.80 16 28 H 0.39 4.02 8.86 -74.06 -0.66 3.36 16 29 H 0.10 1.97 8.11 -2.39 -0.02 1.95 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 1.66 8.05 -2.39 -0.02 1.65 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -67.86 288.51 2.60 -65.26 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.40 Total: 8.32 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 3.23 Total: -26.55 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -1.02 Total: -81.79 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -1.89 Total: -11.37 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.13 kcal Total: -67.86 2.60 -65.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849141048.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.747 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds