Wall clock time and date at job start Thu Apr 9 2020 12:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46497 * 126.03962 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47267 * 90.00209 * 7 6 2 9 9 O 1.21280 * 119.99663 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00093 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00166 * 179.97438 * 10 8 7 12 12 H 1.09008 * 109.47020 * 34.99774 * 11 10 8 13 13 C 1.53002 * 109.47541 * 275.00027 * 11 10 8 14 14 C 1.50701 * 109.47267 * 154.99353 * 11 10 8 15 15 H 1.08003 * 120.00024 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00238 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99803 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00241 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.46941 * 60.00239 * 18 16 14 20 20 H 1.48499 * 109.47216 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47209 * 300.00325 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 25 25 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 26 26 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 27 27 H 1.08997 * 109.46689 * 210.00046 * 7 6 2 28 28 H 1.09002 * 109.46868 * 329.99889 * 7 6 2 29 29 H 0.96997 * 120.00051 * 359.97438 * 10 8 7 30 30 H 1.09000 * 109.46863 * 59.99367 * 13 11 10 31 31 H 1.08994 * 109.46960 * 179.97438 * 13 11 10 32 32 H 1.09002 * 109.46730 * 300.00349 * 13 11 10 33 33 H 0.96994 * 120.00070 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4846 -0.0131 8 6 1.6995 -2.9554 -1.4364 9 8 1.9402 -2.2002 -2.3543 10 7 1.2931 -4.2152 -1.6891 11 6 1.1425 -4.6727 -3.0726 12 1 1.9094 -4.2100 -3.6938 13 6 -0.2414 -4.2784 -3.5925 14 6 1.2905 -6.1715 -3.1250 15 1 1.4777 -6.7278 -2.2183 16 6 1.1861 -6.8329 -4.3303 17 7 0.9577 -6.1557 -5.4344 18 14 1.3689 -8.6908 -4.3952 19 1 0.3241 -9.3208 -3.5487 20 1 1.2164 -9.1545 -5.7977 21 1 2.7121 -9.0739 -3.8910 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5090 25 1 1.9741 2.1211 0.0007 26 1 4.5084 1.2891 0.0050 27 1 2.5900 -3.1056 0.4972 28 1 0.8955 -2.5605 0.5007 29 1 1.1003 -4.8191 -0.9549 30 1 -0.3484 -3.1943 -3.5546 31 1 -0.3531 -4.6184 -4.6220 32 1 -1.0083 -4.7411 -2.9713 33 1 0.8846 -6.6209 -6.2824 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858919654.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:29 Heat of formation + Delta-G solvation = 35.588851 kcal Electronic energy + Delta-G solvation = -16608.801072 eV Core-core repulsion = 13864.320108 eV Total energy + Delta-G solvation = -2744.480964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.08748 -38.81100 -34.92560 -33.24612 -32.44365 -31.88313 -29.27886 -26.93555 -26.72547 -25.29861 -21.79236 -20.89153 -19.83786 -19.34753 -17.44935 -16.60467 -15.89305 -15.25617 -14.95636 -14.61045 -14.11942 -13.82630 -13.50334 -13.08555 -12.84840 -12.60178 -12.47368 -12.13511 -11.95515 -11.66187 -11.14706 -10.98884 -10.80139 -10.42691 -10.38392 -10.28291 -9.59050 -9.12476 -8.88339 -8.60491 -8.28628 -8.03009 -6.16436 -4.26515 2.00940 2.59870 3.03497 3.16926 3.23177 3.28698 3.29747 3.98152 4.33296 4.68339 4.75086 5.11146 5.13320 5.15771 5.32692 5.33991 5.46019 5.77019 5.82811 5.90016 6.28807 6.74643 6.82842 6.87513 7.07214 7.13122 7.34751 7.47915 7.62767 7.84329 7.91311 8.08762 8.52927 8.70588 8.98128 9.40860 10.89538 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.049535 B = 0.005201 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.117662 B = 5381.843415 C = 5533.657981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.094 3.906 3 C -0.281 4.281 4 C 0.043 3.957 5 N -0.289 5.289 6 N -0.348 5.348 7 C 0.108 3.892 8 C 0.484 3.516 9 O -0.535 6.535 10 N -0.705 5.705 11 C 0.266 3.734 12 H 0.048 0.952 13 C -0.146 4.146 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.883 5.883 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.144 0.856 26 H 0.180 0.820 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.390 0.610 30 H 0.013 0.987 31 H 0.091 0.909 32 H 0.027 0.973 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 8.761 12.299 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.033 4.033 3 C -0.310 4.310 4 C -0.143 4.143 5 N -0.109 5.109 6 N -0.131 5.131 7 C -0.018 4.018 8 C 0.266 3.734 9 O -0.412 6.412 10 N -0.354 5.354 11 C 0.164 3.836 12 H 0.066 0.934 13 C -0.205 4.205 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 H 0.096 0.904 23 H 0.090 0.910 24 H 0.104 0.896 25 H 0.161 0.839 26 H 0.197 0.803 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.222 0.778 30 H 0.032 0.968 31 H 0.109 0.891 32 H 0.046 0.954 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.161 8.060 11.383 13.996 hybrid contribution -0.460 -0.610 0.167 0.782 sum -1.621 7.449 11.549 13.839 Atomic orbital electron populations 1.20453 0.87643 1.04279 1.02803 1.21046 0.94603 0.87321 1.00345 1.21129 0.92397 0.98624 1.18878 1.23752 0.98005 0.92231 1.00300 1.77360 0.96519 1.13092 1.23950 1.47967 1.03930 1.04699 1.56455 1.21594 1.02623 0.79885 0.97670 1.20563 0.78942 0.83665 0.90263 1.90728 1.50221 1.54442 1.45789 1.46498 1.65951 1.11118 1.11822 1.18773 0.94594 0.94083 0.76136 0.93391 1.22076 0.97852 0.96483 1.04079 1.21159 1.51147 0.90926 0.94214 0.92041 1.24896 0.94557 0.98893 0.95339 1.69890 1.47752 1.35794 0.98609 0.86477 0.78720 0.84529 0.77193 1.20120 1.21087 1.20140 0.90372 0.91006 0.89628 0.83856 0.80289 0.86268 0.86679 0.77774 0.96760 0.89050 0.95373 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.90 36.01 0.36 -0.65 16 2 C 0.09 1.37 6.93 -82.26 -0.57 0.80 16 3 C -0.28 -3.87 10.72 -40.01 -0.43 -4.30 16 4 C 0.04 0.63 12.03 -17.37 -0.21 0.42 16 5 N -0.29 -5.10 12.58 30.62 0.39 -4.72 16 6 N -0.35 -5.73 3.10 -58.31 -0.18 -5.91 16 7 C 0.11 1.57 6.55 -5.19 -0.03 1.53 16 8 C 0.48 9.54 7.86 -10.99 -0.09 9.46 16 9 O -0.53 -13.26 16.09 5.56 0.09 -13.17 16 10 N -0.70 -14.15 5.07 -54.93 -0.28 -14.42 16 11 C 0.27 6.70 2.56 -69.08 -0.18 6.52 16 12 H 0.05 1.43 7.58 -51.92 -0.39 1.03 16 13 C -0.15 -3.58 9.26 37.16 0.34 -3.24 16 14 C -0.54 -14.03 8.73 -34.44 -0.30 -14.34 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -24.84 11.32 55.43 0.63 -24.21 16 18 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.85 7.72 -51.93 -0.40 0.45 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 27 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.12 1.21 7.66 -51.93 -0.40 0.81 16 29 H 0.39 6.45 8.54 -40.82 -0.35 6.10 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 289.29 15.07 4.36 4.36 Total: -1.00 -33.88 289.29 -5.57 -39.45 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.36 Total: 5.27 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.20 Total: -2.10 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.55 Total: -49.26 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.17 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.88 -5.57 -39.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858919654.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.040 kcal (2) G-P(sol) polarization free energy of solvation -33.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds