Wall clock time and date at job start Thu Apr 9 2020 12:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35314 * 126.12759 * 2 1 4 4 C 1.39872 * 107.91954 * 179.90471 * 3 2 1 5 5 N 1.30835 * 108.20422 * 0.36600 * 4 3 2 6 6 N 1.34949 * 126.12355 * 180.31496 * 2 1 3 7 7 C 1.46497 * 126.03962 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47267 * 90.00209 * 7 6 2 9 9 O 1.21280 * 119.99663 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00093 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00166 * 179.97438 * 10 8 7 12 12 H 1.09008 * 109.47020 * 34.99774 * 11 10 8 13 13 C 1.53002 * 109.47541 * 275.00027 * 11 10 8 14 14 C 1.50701 * 109.47267 * 154.99353 * 11 10 8 15 15 H 1.08003 * 120.00024 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00238 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99803 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00241 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.46941 * 60.00239 * 18 16 14 20 20 H 1.48499 * 109.47216 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47209 * 300.00325 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.68517 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.68598 * 1 2 3 25 25 H 1.08000 * 126.04140 * 0.04339 * 3 2 1 26 26 H 1.07995 * 125.89631 * 180.14711 * 4 3 2 27 27 H 1.08997 * 109.46689 * 210.00046 * 7 6 2 28 28 H 1.09002 * 109.46868 * 329.99889 * 7 6 2 29 29 H 0.96997 * 120.00051 * 359.97438 * 10 8 7 30 30 H 1.09000 * 109.46863 * 59.99367 * 13 11 10 31 31 H 1.08994 * 109.46960 * 179.97438 * 13 11 10 32 32 H 1.09002 * 109.46730 * 300.00349 * 13 11 10 33 33 H 0.96994 * 120.00070 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 0.0022 5 7 3.6334 -0.6524 -0.0044 6 7 2.3026 -1.0900 -0.0060 7 6 1.8539 -2.4846 -0.0131 8 6 1.6995 -2.9554 -1.4364 9 8 1.9402 -2.2002 -2.3543 10 7 1.2931 -4.2152 -1.6891 11 6 1.1425 -4.6727 -3.0726 12 1 1.9094 -4.2100 -3.6938 13 6 -0.2414 -4.2784 -3.5925 14 6 1.2905 -6.1715 -3.1250 15 1 1.4777 -6.7278 -2.2183 16 6 1.1861 -6.8329 -4.3303 17 7 0.9577 -6.1557 -5.4344 18 14 1.3689 -8.6908 -4.3952 19 1 0.3241 -9.3208 -3.5487 20 1 1.2164 -9.1545 -5.7977 21 1 2.7121 -9.0739 -3.8910 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5090 25 1 1.9741 2.1211 0.0007 26 1 4.5084 1.2891 0.0050 27 1 2.5900 -3.1056 0.4972 28 1 0.8955 -2.5605 0.5007 29 1 1.1003 -4.8191 -0.9549 30 1 -0.3484 -3.1943 -3.5546 31 1 -0.3531 -4.6184 -4.6220 32 1 -1.0083 -4.7411 -2.9713 33 1 0.8846 -6.6209 -6.2824 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858919654.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:29 Heat of formation + Delta-G solvation = 11.082506 kcal Electronic energy + Delta-G solvation = -16609.863747 eV Core-core repulsion = 13864.320108 eV Total energy + Delta-G solvation = -2745.543639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.21031 -40.44478 -36.80535 -34.56522 -34.22764 -32.93759 -31.09217 -28.17713 -27.77731 -27.34638 -23.47725 -22.08329 -21.46128 -20.66289 -19.09444 -17.85916 -17.62784 -17.00940 -16.39324 -16.07956 -15.55093 -15.11160 -14.63741 -14.61648 -14.38290 -13.79169 -13.78412 -13.52513 -13.22378 -13.02083 -12.88438 -12.83865 -12.73074 -12.28915 -12.17584 -11.53824 -11.15980 -11.13438 -10.62376 -10.14946 -9.84635 -9.40486 -8.19577 -6.37867 0.88009 1.44474 1.46800 1.52368 1.54902 1.63933 1.97468 2.34365 2.58640 3.11057 3.64223 3.78973 3.87608 4.10370 4.19457 4.37015 4.71578 4.72415 4.82234 4.86116 4.88203 5.03323 5.05459 5.28860 5.38570 5.55303 5.63695 5.76866 5.86260 6.06323 6.11442 6.69364 6.79899 6.85655 7.28763 7.46141 8.86568 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.049535 B = 0.005201 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.117662 B = 5381.843415 C = 5533.657981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.082 3.918 3 C -0.290 4.290 4 C 0.040 3.960 5 N -0.340 5.340 6 N -0.366 5.366 7 C 0.118 3.882 8 C 0.482 3.518 9 O -0.592 6.592 10 N -0.697 5.697 11 C 0.271 3.729 12 H -0.009 1.009 13 C -0.131 4.131 14 C -0.548 4.548 15 H 0.077 0.923 16 C 0.013 3.987 17 N -0.919 5.919 18 Si 0.974 3.026 19 H -0.260 1.260 20 H -0.288 1.288 21 H -0.272 1.272 22 H 0.110 0.890 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.171 0.829 26 H 0.208 0.792 27 H 0.140 0.860 28 H 0.162 0.838 29 H 0.410 0.590 30 H 0.011 0.989 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 8.387 14.459 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C -0.319 4.319 4 C -0.145 4.145 5 N -0.161 5.161 6 N -0.149 5.149 7 C -0.007 4.007 8 C 0.267 3.733 9 O -0.473 6.473 10 N -0.347 5.347 11 C 0.168 3.832 12 H 0.009 0.991 13 C -0.190 4.190 14 C -0.586 4.586 15 H 0.095 0.905 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.799 3.201 19 H -0.185 1.185 20 H -0.213 1.213 21 H -0.197 1.197 22 H 0.128 0.872 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.189 0.811 26 H 0.225 0.775 27 H 0.158 0.842 28 H 0.180 0.820 29 H 0.246 0.754 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.995 7.679 13.604 15.748 hybrid contribution -0.181 -0.387 -0.514 0.668 sum -2.176 7.292 13.090 15.141 Atomic orbital electron populations 1.20583 0.85161 1.04324 1.04825 1.21780 0.96328 0.87102 0.99258 1.21581 0.91988 0.99947 1.18346 1.24374 0.99677 0.91811 0.98675 1.77282 0.97927 1.14731 1.26176 1.48152 1.03886 1.05489 1.57362 1.21695 1.05647 0.79755 0.93612 1.21508 0.76973 0.82601 0.92227 1.90699 1.52398 1.55860 1.48295 1.46184 1.66044 1.12020 1.10478 1.18343 0.93060 0.93677 0.78122 0.99127 1.21873 0.98092 0.96234 1.02828 1.21523 1.50786 0.91374 0.94918 0.90491 1.25834 0.94114 1.03777 0.94946 1.70055 1.48759 1.37727 0.99199 0.85362 0.79020 0.78602 0.77143 1.18493 1.21327 1.19732 0.87207 0.92129 0.88396 0.81132 0.77496 0.84205 0.82033 0.75367 0.97038 0.91684 0.93466 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.90 71.24 0.71 -1.02 16 2 C 0.08 2.24 6.93 41.41 0.29 2.53 16 3 C -0.29 -7.44 10.72 21.99 0.24 -7.21 16 4 C 0.04 1.13 12.03 85.24 1.02 2.16 16 5 N -0.34 -11.87 12.58 -57.03 -0.72 -12.58 16 6 N -0.37 -11.58 3.10 -338.40 -1.05 -12.63 16 7 C 0.12 3.19 6.55 85.63 0.56 3.75 16 8 C 0.48 18.89 7.86 87.66 0.69 19.58 16 9 O -0.59 -30.19 16.09 -3.03 -0.05 -30.24 16 10 N -0.70 -27.60 5.07 -446.10 -2.26 -29.86 16 11 C 0.27 13.97 2.56 44.25 0.11 14.08 16 12 H -0.01 -0.57 7.58 -2.38 -0.02 -0.59 16 13 C -0.13 -6.55 9.26 71.98 0.67 -5.88 16 14 C -0.55 -28.56 8.73 25.60 0.22 -28.34 16 15 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 16 C 0.01 0.71 5.30 84.65 0.45 1.16 16 17 N -0.92 -52.86 11.32 21.45 0.24 -52.62 16 18 Si 0.97 41.56 29.54 68.60 2.03 43.58 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.30 7.72 -2.39 -0.02 1.28 16 24 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 26 H 0.21 4.19 8.06 -2.91 -0.02 4.16 16 27 H 0.14 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.16 2.79 7.66 -2.39 -0.02 2.77 16 29 H 0.41 12.77 8.54 -92.71 -0.79 11.98 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 3.59 6.07 -2.39 -0.01 3.58 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -76.46 289.29 3.47 -72.99 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.32 Total: 20.54 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 4.95 Total: 0.82 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -3.78 Total: -107.69 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -76.46 3.47 -72.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858919654.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.074 kcal (2) G-P(sol) polarization free energy of solvation -76.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds