Wall clock time and date at job start Thu Apr 9 2020 12:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35997 * 116.99957 * 2 1 4 4 C 1.38727 * 120.03723 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.11925 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.19642 * 359.73678 * 5 4 3 7 7 C 1.38802 * 120.06610 * 0.51725 * 6 5 4 8 8 N 1.39974 * 120.05869 * 179.76820 * 7 6 5 9 9 C 1.46500 * 120.00169 * 359.71899 * 8 7 6 10 10 C 1.50706 * 109.46949 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00167 * 359.72205 * 10 9 8 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47474 * 90.00322 * 14 12 10 16 16 H 1.48507 * 109.46754 * 210.00056 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99887 * 14 12 10 18 18 C 1.38905 * 120.03226 * 179.97438 * 3 2 1 19 19 O 1.36111 * 120.09515 * 0.02562 * 18 3 2 20 20 C 1.42897 * 117.00021 * 269.97569 * 19 18 3 21 21 H 1.09004 * 109.47063 * 299.99807 * 1 2 3 22 22 H 1.09003 * 109.47063 * 59.99745 * 1 2 3 23 23 H 1.09002 * 109.47287 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.93631 * 0.03558 * 4 3 2 25 25 H 1.08000 * 119.89673 * 180.02562 * 5 4 3 26 26 H 1.07998 * 119.96827 * 180.28185 * 6 5 4 27 27 H 0.97010 * 119.99921 * 179.72433 * 8 7 6 28 28 H 1.09000 * 109.47175 * 60.00283 * 9 8 7 29 29 H 1.09001 * 109.47297 * 299.99791 * 9 8 7 30 30 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 31 31 H 1.09005 * 109.47140 * 179.97438 * 20 19 18 32 32 H 1.09001 * 109.47041 * 299.99920 * 20 19 18 33 33 H 1.08993 * 109.47207 * 60.00201 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2916 2.3757 -0.0005 5 6 1.9173 3.6080 -0.0011 6 6 3.2973 3.6871 0.0044 7 6 4.0603 2.5276 -0.0004 8 7 5.4578 2.6079 0.0003 9 6 6.1163 3.9165 -0.0002 10 6 7.6114 3.7265 0.0000 11 1 8.0291 2.7306 0.0051 12 6 8.4457 4.8242 -0.0009 13 7 7.9370 6.0369 -0.0015 14 14 10.2988 4.5886 -0.0013 15 1 10.7895 4.5254 -1.4015 16 1 10.9429 5.7295 0.6979 17 1 10.6372 3.3238 0.6994 18 6 3.4335 1.2852 0.0005 19 8 4.1774 0.1454 0.0005 20 6 4.5319 -0.3979 1.2738 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.2131 2.3187 -0.0004 25 1 1.3261 4.5119 -0.0011 26 1 3.7824 4.6520 0.0086 27 1 5.9902 1.7970 0.0010 28 1 5.8203 4.4726 0.8893 29 1 5.8212 4.4715 -0.8907 30 1 8.5240 6.8091 -0.0017 31 1 5.1221 -1.3032 1.1309 32 1 5.1172 0.3337 1.8308 33 1 3.6266 -0.6391 1.8307 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905465646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:53 Heat of formation + Delta-G solvation = -71.277951 kcal Electronic energy + Delta-G solvation = -16610.430054 eV Core-core repulsion = 13829.022247 eV Total energy + Delta-G solvation = -2781.407807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39321 -39.23991 -38.08945 -36.30661 -34.48759 -31.11757 -30.42121 -28.48232 -28.10718 -27.18721 -24.82686 -23.12897 -22.08510 -19.55035 -18.72957 -18.08807 -17.66944 -16.88994 -16.62449 -16.42638 -16.02101 -15.59352 -15.40969 -15.05494 -14.91869 -14.20046 -13.94744 -13.38016 -13.30811 -12.89994 -12.77887 -12.70973 -12.57237 -12.16109 -12.06547 -11.90171 -11.45418 -11.00476 -10.86756 -10.54676 -9.10449 -8.32021 -8.24064 -6.45764 0.38653 0.67278 1.40524 1.41857 1.52996 2.21824 2.37300 2.64583 2.94552 3.03019 3.12611 4.06492 4.24874 4.34183 4.44365 4.47442 4.50434 4.52310 4.55557 4.62186 4.77509 4.80872 4.98416 5.27226 5.29093 5.34983 5.47567 5.62009 5.71746 5.87094 6.23312 6.42261 6.63715 6.80847 7.05900 7.26837 8.79681 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040598 B = 0.005708 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.528498 B = 4903.890073 C = 5511.772998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.150 3.850 4 C -0.261 4.261 5 C -0.028 4.028 6 C -0.247 4.247 7 C 0.224 3.776 8 N -0.725 5.725 9 C 0.273 3.727 10 C -0.560 4.560 11 H 0.066 0.934 12 C 0.013 3.987 13 N -0.924 5.924 14 Si 0.977 3.023 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.264 1.264 18 C -0.054 4.054 19 O -0.336 6.336 20 C 0.029 3.971 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.118 0.882 24 H 0.160 0.840 25 H 0.156 0.844 26 H 0.111 0.889 27 H 0.396 0.604 28 H -0.002 1.002 29 H -0.004 1.004 30 H 0.270 0.730 31 H 0.110 0.890 32 H 0.031 0.969 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.739 -9.470 1.900 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.242 6.242 3 C 0.103 3.897 4 C -0.282 4.282 5 C -0.046 4.046 6 C -0.270 4.270 7 C 0.115 3.885 8 N -0.349 5.349 9 C 0.150 3.850 10 C -0.598 4.598 11 H 0.084 0.916 12 C -0.187 4.187 13 N -0.562 5.562 14 Si 0.801 3.199 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.188 1.188 18 C -0.104 4.104 19 O -0.253 6.253 20 C -0.066 4.066 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.137 0.863 24 H 0.178 0.822 25 H 0.173 0.827 26 H 0.129 0.871 27 H 0.230 0.770 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.050 0.950 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.432 -9.371 1.754 16.472 hybrid contribution 1.066 0.221 0.225 1.111 sum -12.366 -9.150 1.979 15.510 Atomic orbital electron populations 1.23384 0.76338 1.05456 1.02513 1.86092 1.23535 1.26243 1.88289 1.19110 0.90329 0.85661 0.94600 1.21120 1.00878 0.90652 1.15555 1.20997 0.92506 0.98439 0.92691 1.20696 0.95068 0.96257 1.14991 1.18337 0.84869 0.93143 0.92159 1.45206 1.02045 1.09351 1.78297 1.18643 0.91745 0.80325 0.94263 1.21543 0.91406 0.93751 1.53087 0.91554 1.25871 1.04659 0.94386 0.93810 1.70062 1.37578 0.98687 1.49874 0.85270 0.77903 0.78174 0.78583 1.19692 1.20298 1.18830 1.17413 0.87645 0.84780 1.20530 1.86111 1.70773 1.38506 1.29875 1.23106 0.99794 0.98752 0.84916 0.91394 0.91573 0.86347 0.82218 0.82667 0.87090 0.76994 0.98455 0.98648 0.92100 0.87139 0.95015 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -9.39 10.28 -79.54 -0.82 -10.21 16 3 C 0.15 4.91 6.69 22.55 0.15 5.06 16 4 C -0.26 -7.19 9.04 22.38 0.20 -6.98 16 5 C -0.03 -0.83 10.03 22.26 0.22 -0.61 16 6 C -0.25 -9.64 9.31 22.40 0.21 -9.43 16 7 C 0.22 9.50 6.67 38.20 0.25 9.75 16 8 N -0.72 -33.95 5.72 -342.74 -1.96 -35.92 16 9 C 0.27 14.75 4.67 85.63 0.40 15.15 16 10 C -0.56 -31.47 9.28 25.60 0.24 -31.24 16 11 H 0.07 3.58 7.60 -2.91 -0.02 3.56 16 12 C 0.01 0.72 5.46 84.66 0.46 1.18 16 13 N -0.92 -54.19 13.29 21.45 0.28 -53.90 16 14 Si 0.98 43.15 29.54 68.60 2.03 45.18 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 18 C -0.05 -2.11 5.76 22.65 0.13 -1.98 16 19 O -0.34 -12.73 9.44 -80.82 -0.76 -13.50 16 20 C 0.03 0.88 11.13 113.37 1.26 2.14 16 21 H 0.07 0.94 7.66 -2.39 -0.02 0.93 16 22 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 23 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 24 H 0.16 3.09 6.29 -2.91 -0.02 3.07 16 25 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 26 H 0.11 4.70 6.73 -2.91 -0.02 4.68 16 27 H 0.40 18.01 7.68 -92.70 -0.71 17.30 16 28 H 0.00 -0.14 7.94 -2.39 -0.02 -0.15 16 29 H 0.00 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -66.48 285.90 3.82 -62.66 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.40 Total: 21.25 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 4.64 Total: -15.56 kcal Atomic # 7 Polarization: -88.14 SS G_CDS: -1.68 Total: -89.82 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.58 Total: -23.71 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -66.48 3.82 -62.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905465646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.617 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds