Wall clock time and date at job start Thu Apr 9 2020 12:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.46528 * 2 1 4 4 C 1.50699 * 109.47116 * 239.99915 * 2 1 3 5 5 H 1.07997 * 119.99891 * 239.99675 * 4 2 1 6 6 C 1.37877 * 119.99976 * 59.99926 * 4 2 1 7 7 N 1.31510 * 120.00160 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99727 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47259 * 59.99895 * 8 6 4 10 10 H 1.48503 * 109.47159 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47208 * 300.00024 * 8 6 4 12 12 N 1.46897 * 109.47130 * 119.99595 * 2 1 3 13 13 C 1.46906 * 110.99814 * 58.95696 * 12 2 1 14 14 C 1.38868 * 111.00263 * 295.00320 * 12 2 1 15 15 N 1.31581 * 120.45071 * 354.72117 * 14 12 2 16 16 C 1.33268 * 120.75197 * 179.79111 * 15 14 12 17 17 C 1.34980 * 121.73300 * 0.47229 * 16 15 14 18 18 N 1.36348 * 120.87979 * 359.79226 * 17 16 15 19 19 C 1.46494 * 120.44075 * 179.97438 * 18 17 16 20 20 C 1.35182 * 119.12421 * 359.97438 * 18 17 16 21 21 O 1.21931 * 120.79453 * 180.02562 * 20 18 17 22 22 H 1.08999 * 109.47201 * 299.99886 * 1 2 3 23 23 H 1.08999 * 109.46764 * 60.00427 * 1 2 3 24 24 H 1.09003 * 109.46528 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99921 * 179.97438 * 7 6 4 26 26 H 1.08992 * 109.47459 * 59.99744 * 13 12 2 27 27 H 1.09004 * 109.47040 * 179.97438 * 13 12 2 28 28 H 1.09000 * 109.47033 * 299.99847 * 13 12 2 29 29 H 1.07998 * 119.13506 * 180.21888 * 16 15 14 30 30 H 1.08003 * 119.55741 * 179.76785 * 17 16 15 31 31 H 1.09004 * 109.47123 * 270.02504 * 19 18 17 32 32 H 1.08996 * 109.47121 * 30.01706 * 19 18 17 33 33 H 1.08999 * 109.47372 * 150.02473 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8282 -2.5200 -4.0081 10 1 1.8270 -0.4201 -5.2205 11 1 3.8076 -1.1190 -4.0077 12 7 2.0198 -0.6924 1.1995 13 6 1.5284 -2.0761 1.2460 14 6 1.6690 -0.0007 2.3514 15 7 1.0770 1.1716 2.2712 16 6 0.7341 1.8387 3.3728 17 6 0.9852 1.3500 4.6057 18 7 1.6002 0.1441 4.7686 19 6 1.8685 -0.3769 6.1113 20 6 1.9591 -0.5646 3.6748 21 8 2.5103 -1.6466 3.7851 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4844 26 1 1.8763 -2.6150 0.3648 27 1 1.9061 -2.5657 2.1436 28 1 0.4386 -2.0742 1.2640 29 1 0.2461 2.7973 3.2765 30 1 0.6954 1.9221 5.4747 31 1 2.8505 -0.0390 6.4425 32 1 1.1073 -0.0127 6.8011 33 1 1.8476 -1.4665 6.0892 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096069.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:35 Heat of formation + Delta-G solvation = 15.780606 kcal Electronic energy + Delta-G solvation = -17330.967038 eV Core-core repulsion = 14585.627124 eV Total energy + Delta-G solvation = -2745.339914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.48896 -39.35428 -38.50869 -35.98622 -34.54855 -31.12822 -30.56504 -28.88468 -27.28369 -27.06428 -24.56036 -24.07610 -21.70823 -19.41064 -18.42607 -18.02581 -17.70292 -17.22379 -16.63099 -16.13642 -15.56072 -15.17441 -15.13578 -14.61986 -14.25246 -14.14745 -13.69917 -13.35799 -13.20578 -12.99686 -12.83769 -12.70528 -12.57935 -12.12020 -12.02180 -11.85096 -11.54392 -10.96720 -10.52461 -10.02868 -9.93175 -8.30880 -8.09679 -6.23075 -0.18200 0.77955 1.40836 1.44945 1.46699 1.54572 2.42917 2.60575 2.88342 3.18722 3.44378 3.83931 3.96707 4.23834 4.42486 4.49013 4.52412 4.58753 4.76002 4.77722 4.90614 5.06350 5.11428 5.18547 5.44942 5.50701 5.62583 5.72632 5.77717 6.05772 6.27896 6.53274 6.81269 6.83416 7.18476 7.45279 8.96239 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.045656 B = 0.006982 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.131192 B = 4009.402589 C = 4440.371446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.234 3.766 3 H 0.017 0.983 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.964 3.036 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.468 5.468 13 C 0.037 3.963 14 C 0.230 3.770 15 N -0.482 5.482 16 C -0.036 4.036 17 C 0.058 3.942 18 N -0.483 5.483 19 C 0.059 3.941 20 C 0.474 3.526 21 O -0.557 6.557 22 H 0.042 0.958 23 H 0.064 0.936 24 H 0.021 0.979 25 H 0.263 0.737 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.193 0.807 30 H 0.226 0.774 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 1.465 17.635 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.129 3.871 3 H 0.035 0.965 4 C -0.571 4.571 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.789 3.211 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.185 5.185 13 C -0.109 4.109 14 C -0.031 4.031 15 N -0.205 5.205 16 C -0.176 4.176 17 C -0.069 4.069 18 N -0.197 5.197 19 C -0.080 4.080 20 C 0.267 3.733 21 O -0.438 6.438 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.047 0.953 29 H 0.210 0.790 30 H 0.242 0.758 31 H 0.107 0.893 32 H 0.151 0.849 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.954 1.311 16.917 17.080 hybrid contribution -0.141 -0.469 -0.453 0.667 sum -2.095 0.841 16.465 16.619 Atomic orbital electron populations 1.22083 0.98918 0.98392 1.01106 1.18963 0.91120 0.93024 0.84011 0.96490 1.21390 1.31702 1.12994 0.91045 0.92415 1.25686 0.95146 0.95742 1.01747 1.70034 1.37246 1.23876 1.24228 0.85528 0.78609 0.78720 0.78243 1.19429 1.20614 1.19940 1.58904 1.54070 1.04421 1.01092 1.22420 0.97511 0.87100 1.03874 1.23007 0.96357 0.93057 0.90640 1.68025 1.09555 1.08145 1.34760 1.22307 1.06226 1.02938 0.86153 1.23319 0.95629 0.86151 1.01832 1.45600 1.47364 1.17591 1.09135 1.22482 1.05004 1.01709 0.78800 1.19102 0.82476 0.86154 0.85561 1.90790 1.45090 1.21768 1.86136 0.93949 0.91738 0.95984 0.92766 0.90664 0.89500 0.95299 0.79009 0.75778 0.89301 0.84918 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.64 8.23 71.99 0.59 -7.05 16 2 C 0.23 12.92 1.97 44.17 0.09 13.01 16 3 H 0.02 1.06 7.67 -2.39 -0.02 1.05 16 4 C -0.53 -30.91 7.94 25.60 0.20 -30.71 16 5 H 0.06 3.32 6.75 -2.91 -0.02 3.30 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.91 -54.07 11.32 21.45 0.24 -53.83 16 8 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 N -0.47 -23.25 4.78 -699.27 -3.34 -26.59 16 13 C 0.04 1.68 8.57 127.69 1.09 2.77 16 14 C 0.23 10.01 6.21 135.36 0.84 10.85 16 15 N -0.48 -19.59 6.88 -188.82 -1.30 -20.89 16 16 C -0.04 -0.98 11.02 83.73 0.92 -0.06 16 17 C 0.06 1.09 10.32 83.24 0.86 1.95 16 18 N -0.48 -11.86 3.02 -666.81 -2.01 -13.87 16 19 C 0.06 0.86 10.46 127.77 1.34 2.19 16 20 C 0.47 17.61 7.40 86.40 0.64 18.25 16 21 O -0.56 -23.12 14.12 -5.09 -0.07 -23.20 16 22 H 0.04 2.06 5.90 -2.39 -0.01 2.05 16 23 H 0.06 3.68 6.07 -2.39 -0.01 3.67 16 24 H 0.02 1.10 6.38 -2.39 -0.02 1.08 16 25 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 26 H 0.07 3.45 6.53 -2.39 -0.02 3.44 16 27 H 0.09 3.75 5.42 -2.38 -0.01 3.73 16 28 H 0.03 1.26 6.28 -2.39 -0.01 1.25 16 29 H 0.19 3.88 8.06 -2.91 -0.02 3.85 16 30 H 0.23 1.26 8.06 -2.91 -0.02 1.24 16 31 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.13 0.67 8.05 -2.39 -0.02 0.65 16 33 H 0.08 1.40 7.49 -2.39 -0.02 1.39 16 Total: -1.00 -76.13 267.51 3.69 -72.44 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.12 Total: 6.48 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 7.02 Total: 12.57 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -6.41 Total: -115.18 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.07 Total: -23.20 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -76.13 3.69 -72.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096069.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.221 kcal (2) G-P(sol) polarization free energy of solvation -76.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds