Wall clock time and date at job start Thu Apr 9 2020 12:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47149 * 2 1 4 4 C 1.37099 * 120.00192 * 265.26682 * 3 2 1 5 5 H 1.08004 * 119.99839 * 52.61211 * 4 3 2 6 6 C 1.38948 * 120.00152 * 232.61369 * 4 3 2 7 7 N 1.31415 * 119.99912 * 200.21868 * 6 4 3 8 8 Si 1.86799 * 120.00023 * 20.21287 * 6 4 3 9 9 H 1.48505 * 109.47065 * 95.15719 * 8 6 4 10 10 H 1.48503 * 109.47486 * 215.15524 * 8 6 4 11 11 H 1.48504 * 109.47311 * 335.16185 * 8 6 4 12 12 C 1.34772 * 120.00210 * 85.26251 * 3 2 1 13 13 O 1.21300 * 119.99759 * 5.04340 * 12 3 2 14 14 C 1.50706 * 120.00366 * 185.03906 * 12 3 2 15 15 H 1.08998 * 109.46972 * 311.57450 * 14 12 3 16 16 C 1.52997 * 109.46787 * 71.57550 * 14 12 3 17 17 N 1.46502 * 109.47090 * 191.57357 * 14 12 3 18 18 C 1.36878 * 126.39550 * 120.28742 * 17 14 12 19 19 C 1.34672 * 106.81862 * 180.19140 * 18 17 14 20 20 N 1.34128 * 108.01964 * 359.58395 * 19 18 17 21 21 C 1.30503 * 109.25511 * 0.26820 * 20 19 18 22 22 H 1.08997 * 109.46653 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47235 * 299.99892 * 1 2 3 24 24 H 1.08997 * 109.47358 * 59.99537 * 1 2 3 25 25 H 1.08999 * 109.47235 * 240.00108 * 2 1 3 26 26 H 1.08999 * 109.47758 * 120.00119 * 2 1 3 27 27 H 0.97001 * 119.99596 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47122 * 294.34759 * 16 14 12 29 29 H 1.09006 * 109.46940 * 54.34523 * 16 14 12 30 30 H 1.08997 * 109.46841 * 174.34434 * 16 14 12 31 31 H 1.08000 * 126.59605 * 0.08345 * 18 17 14 32 32 H 1.07995 * 125.99140 * 179.84923 * 19 18 17 33 33 H 1.08003 * 125.65341 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3392 1.9949 -1.1832 5 1 1.6254 2.0119 -1.9936 6 6 3.5826 2.5949 -1.3399 7 7 3.7611 3.5031 -2.2727 8 14 5.0005 2.1105 -0.2244 9 1 5.8193 1.0655 -0.8899 10 1 5.8447 3.3013 0.0487 11 1 4.4649 1.5795 1.0549 12 6 2.1521 2.0487 1.1631 13 8 1.9562 1.4784 2.2156 14 6 2.5451 3.5036 1.1562 15 1 3.4060 3.6443 0.5027 16 6 1.3741 4.3457 0.6456 17 7 2.8911 3.9225 2.5168 18 6 4.0962 4.4220 2.9311 19 6 3.9822 4.6713 4.2496 20 7 2.7384 4.3417 4.6281 21 6 2.0791 3.8924 3.5954 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 4.6291 3.9222 -2.3818 28 1 1.1817 4.1043 -0.3997 29 1 0.4852 4.1290 1.2381 30 1 1.6213 5.4035 0.7348 31 1 4.9711 4.5834 2.3187 32 1 4.7553 5.0709 4.8891 33 1 1.0537 3.5532 3.6021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068231728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:40 Heat of formation + Delta-G solvation = 24.966896 kcal Electronic energy + Delta-G solvation = -17851.735057 eV Core-core repulsion = 15106.793491 eV Total energy + Delta-G solvation = -2744.941566 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.13902 -40.91813 -36.98629 -35.97276 -34.33450 -32.04983 -30.99369 -30.03179 -26.75526 -26.01981 -24.04850 -22.33176 -22.16279 -21.17784 -19.45232 -18.41801 -17.36511 -17.05230 -16.27448 -16.11631 -15.67450 -15.36041 -14.96296 -14.79009 -14.66426 -14.32185 -14.16476 -13.92117 -13.32296 -13.15782 -13.08146 -12.92069 -12.74520 -12.39935 -12.10756 -11.86616 -11.23314 -11.09963 -10.90730 -10.35882 -9.61033 -9.46604 -8.65464 -6.39090 1.02265 1.08595 1.17004 1.26222 1.60694 1.74432 2.00022 2.20366 2.58365 2.76208 3.65729 3.78979 3.83640 3.94082 3.99795 4.25866 4.46665 4.47983 4.61003 4.62169 4.71226 4.74974 4.93047 5.05797 5.16856 5.33591 5.36258 5.59385 5.73535 5.79506 6.18175 6.33624 6.82700 7.08756 7.16356 7.62870 8.46244 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.012797 C = 0.010036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.927804 B = 2187.528104 C = 2789.177235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.097 3.903 3 N -0.469 5.469 4 C -0.347 4.347 5 H 0.092 0.908 6 C 0.058 3.942 7 N -0.866 5.866 8 Si 0.872 3.128 9 H -0.270 1.270 10 H -0.257 1.257 11 H -0.280 1.280 12 C 0.480 3.520 13 O -0.600 6.600 14 C 0.121 3.879 15 H 0.107 0.893 16 C -0.133 4.133 17 N -0.444 5.444 18 C -0.082 4.082 19 C -0.035 4.035 20 N -0.529 5.529 21 C 0.206 3.794 22 H 0.084 0.916 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.285 0.715 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.180 0.820 32 H 0.197 0.803 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 0.604 2.378 2.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 N -0.190 5.190 4 C -0.475 4.475 5 H 0.109 0.891 6 C -0.150 4.150 7 N -0.500 5.500 8 Si 0.697 3.303 9 H -0.196 1.196 10 H -0.181 1.181 11 H -0.205 1.205 12 C 0.268 3.732 13 O -0.484 6.484 14 C 0.014 3.986 15 H 0.125 0.875 16 C -0.191 4.191 17 N -0.126 5.126 18 C -0.215 4.215 19 C -0.182 4.182 20 N -0.248 5.248 21 C -0.076 4.076 22 H 0.103 0.897 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.197 0.803 32 H 0.214 0.786 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.728 0.461 3.375 3.819 hybrid contribution 1.404 -0.465 -0.708 1.640 sum -0.324 -0.004 2.666 2.686 Atomic orbital electron populations 1.21930 0.94495 1.02741 1.01304 1.21697 0.95870 0.83257 1.01711 1.43740 1.58909 1.11294 1.05045 1.18840 1.00160 1.35643 0.92816 0.89058 1.25807 0.98239 0.94640 0.96275 1.69737 1.25655 1.21773 1.32869 0.86908 0.82630 0.80216 0.80568 1.19589 1.18142 1.20528 1.20631 0.79674 0.88486 0.84374 1.90584 1.56093 1.69807 1.31965 1.21366 1.02783 0.93875 0.80555 0.87518 1.21838 0.94865 0.98807 1.03611 1.45510 1.11716 1.46016 1.09382 1.23080 0.90833 1.09150 0.98407 1.22690 0.95730 1.06731 0.93082 1.70292 1.06561 1.19095 1.28840 1.24952 0.99134 1.02121 0.81400 0.89677 0.94191 0.92374 0.89520 0.92872 0.90431 0.88813 0.91259 0.90504 0.80315 0.78590 0.77816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 10.21 71.98 0.73 -3.88 16 2 C 0.10 3.65 6.10 86.38 0.53 4.18 16 3 N -0.47 -20.52 1.94 -635.53 -1.23 -21.76 16 4 C -0.35 -16.02 7.83 84.04 0.66 -15.36 16 5 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 6 C 0.06 2.72 4.04 84.93 0.34 3.06 16 7 N -0.87 -41.89 13.96 21.66 0.30 -41.59 16 8 Si 0.87 38.53 25.10 68.60 1.72 40.25 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.28 -13.59 5.69 99.48 0.57 -13.03 16 12 C 0.48 21.74 4.50 87.66 0.39 22.13 16 13 O -0.60 -29.59 14.91 -3.09 -0.05 -29.64 16 14 C 0.12 4.97 2.05 44.25 0.09 5.06 16 15 H 0.11 4.65 3.24 -2.39 -0.01 4.64 16 16 C -0.13 -4.75 9.03 71.98 0.65 -4.10 16 17 N -0.44 -17.78 2.48 -510.45 -1.27 -19.05 16 18 C -0.08 -3.00 11.54 83.09 0.96 -2.04 16 19 C -0.03 -1.21 11.87 83.52 0.99 -0.22 16 20 N -0.53 -20.78 11.25 -200.31 -2.25 -23.03 16 21 C 0.21 8.12 10.66 180.26 1.92 10.04 16 22 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.09 3.02 8.00 -2.39 -0.02 3.00 16 26 H 0.05 2.09 7.50 -2.39 -0.02 2.07 16 27 H 0.28 12.94 8.31 -92.71 -0.77 12.17 16 28 H 0.09 3.59 6.81 -2.39 -0.02 3.57 16 29 H 0.07 2.25 8.10 -2.38 -0.02 2.23 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.18 5.77 8.06 -2.91 -0.02 5.74 16 32 H 0.20 5.26 8.06 -2.91 -0.02 5.23 16 33 H 0.21 7.37 8.04 -2.91 -0.02 7.35 16 Total: -1.00 -57.40 274.09 5.45 -51.94 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.96 Total: 24.00 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 7.27 Total: 18.87 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -4.45 Total: -105.43 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.72 Total: 40.25 kcal Total: -57.40 5.45 -51.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068231728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.912 kcal (2) G-P(sol) polarization free energy of solvation -57.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds