Wall clock time and date at job start Thu Apr 9 2020 12:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.47134 * 2 1 4 4 C 1.36982 * 120.00452 * 263.08321 * 3 2 1 5 5 H 1.07994 * 120.00379 * 186.47985 * 4 3 2 6 6 C 1.38980 * 119.99653 * 6.47801 * 4 3 2 7 7 N 1.31415 * 119.99693 * 32.52656 * 6 4 3 8 8 Si 1.86793 * 119.99903 * 212.52470 * 6 4 3 9 9 H 1.48502 * 109.47057 * 95.00235 * 8 6 4 10 10 H 1.48506 * 109.47344 * 214.99641 * 8 6 4 11 11 H 1.48500 * 109.47515 * 335.00080 * 8 6 4 12 12 C 1.34777 * 119.99659 * 83.08817 * 3 2 1 13 13 O 1.21629 * 119.99868 * 184.86589 * 12 3 2 14 14 C 1.47355 * 120.00032 * 5.14165 * 12 3 2 15 15 C 1.38105 * 126.42310 * 50.80103 * 14 12 3 16 16 N 1.34282 * 107.40379 * 179.86759 * 15 14 12 17 17 C 1.46499 * 125.75362 * 180.10718 * 16 15 14 18 18 N 1.39937 * 108.50008 * 0.39608 * 16 15 14 19 19 C 1.30448 * 108.91090 * 359.74804 * 18 16 15 20 20 C 1.50692 * 125.98417 * 179.97438 * 19 18 16 21 21 H 1.08997 * 109.47159 * 300.00154 * 1 2 3 22 22 H 1.09000 * 109.46664 * 60.00020 * 1 2 3 23 23 H 1.09003 * 109.47171 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46970 * 240.00168 * 2 1 3 25 25 H 1.08995 * 109.47244 * 120.00373 * 2 1 3 26 26 H 0.97000 * 119.99638 * 179.97438 * 7 6 4 27 27 H 1.07995 * 126.29809 * 0.02636 * 15 14 12 28 28 H 1.09004 * 109.47456 * 270.31616 * 17 16 15 29 29 H 1.09001 * 109.47338 * 30.31043 * 17 16 15 30 30 H 1.09006 * 109.47532 * 150.31271 * 17 16 15 31 31 H 1.09010 * 109.47327 * 270.03654 * 20 19 18 32 32 H 1.09000 * 109.47619 * 30.03742 * 20 19 18 33 33 H 1.09001 * 109.47094 * 150.04345 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3814 1.9794 -1.1776 5 1 2.8388 2.9576 -1.1679 6 6 2.1611 1.3273 -2.3850 7 7 1.1224 0.5342 -2.5234 8 14 3.3414 1.5782 -3.8109 9 1 4.3520 0.4902 -3.8143 10 1 2.5855 1.5556 -5.0890 11 1 4.0248 2.8883 -3.6632 12 6 2.1105 2.0633 1.1588 13 8 2.4310 3.2366 1.1499 14 6 1.8289 1.3860 2.4368 15 6 2.3687 0.1900 2.8673 16 7 1.8541 -0.0695 4.0802 17 6 2.1575 -1.2408 4.9061 18 7 0.9740 0.9642 4.4195 19 6 0.9512 1.8357 3.4490 20 6 0.1320 3.1000 3.4134 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.9685 0.0794 -3.3663 27 1 3.0767 -0.4226 2.3289 28 1 1.4598 -2.0438 4.6683 29 1 3.1760 -1.5732 4.7051 30 1 2.0627 -0.9771 5.9595 31 1 -0.8384 2.8916 2.9628 32 1 -0.0108 3.4692 4.4290 33 1 0.6526 3.8537 2.8226 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113038503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:57 Heat of formation + Delta-G solvation = 57.003096 kcal Electronic energy + Delta-G solvation = -17322.246156 eV Core-core repulsion = 14578.693784 eV Total energy + Delta-G solvation = -2743.552372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.84205 -38.03603 -34.96408 -33.53028 -31.91404 -29.93510 -29.36954 -28.92097 -25.81147 -24.51648 -22.46715 -21.27133 -19.93891 -18.59450 -16.91817 -16.25051 -15.67853 -15.17455 -14.51336 -14.11061 -14.00891 -13.31353 -13.14798 -13.05901 -12.64789 -12.38468 -12.19759 -11.86153 -11.74096 -11.62600 -11.21554 -11.08648 -10.79948 -10.39851 -10.24514 -10.14451 -9.78392 -8.86452 -8.81291 -8.38221 -7.93226 -7.69738 -6.40384 -3.68344 2.15039 2.76675 2.93394 3.19706 3.28793 3.35215 4.08372 4.20525 4.68622 5.04723 5.09191 5.16521 5.18899 5.32180 5.40041 5.66917 5.96375 6.09013 6.18824 6.27155 6.34886 6.47351 6.59422 6.68249 6.81005 7.07003 7.23546 7.28867 7.47891 7.75658 8.06718 8.18945 8.56774 9.23907 9.50411 10.11196 10.63010 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.033144 B = 0.007806 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.605797 B = 3586.154875 C = 3834.705019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 N -0.433 5.433 4 C -0.312 4.312 5 H 0.107 0.893 6 C 0.035 3.965 7 N -0.852 5.852 8 Si 0.909 3.091 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.512 3.488 13 O -0.591 6.591 14 C -0.233 4.233 15 C 0.070 3.930 16 N -0.375 5.375 17 C 0.105 3.895 18 N -0.313 5.313 19 C 0.112 3.888 20 C -0.074 4.074 21 H 0.026 0.974 22 H 0.091 0.909 23 H 0.033 0.967 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.267 0.733 27 H 0.177 0.823 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.246 -6.371 8.691 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.003 4.003 3 N -0.151 5.151 4 C -0.439 4.439 5 H 0.125 0.875 6 C -0.169 4.169 7 N -0.491 5.491 8 Si 0.736 3.264 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.193 1.193 12 C 0.300 3.700 13 O -0.476 6.476 14 C -0.248 4.248 15 C -0.078 4.078 16 N -0.156 5.156 17 C -0.037 4.037 18 N -0.136 5.136 19 C -0.055 4.055 20 C -0.133 4.133 21 H 0.045 0.955 22 H 0.110 0.890 23 H 0.052 0.948 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.194 0.806 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.100 -6.362 9.737 11.632 hybrid contribution 0.794 -0.209 -1.555 1.759 sum 0.694 -6.571 8.182 10.517 Atomic orbital electron populations 1.22056 0.96718 0.99526 1.02196 1.21448 0.94626 0.83968 1.00221 1.43733 1.54749 1.11151 1.05430 1.19714 1.37015 1.04796 0.82339 0.87545 1.25146 0.96021 0.97314 0.98443 1.70205 1.22313 1.30295 1.26241 0.86181 0.81037 0.79105 0.80117 1.20522 1.21233 1.19256 1.16912 0.84808 0.86045 0.82225 1.90578 1.54017 1.16127 1.86896 1.20550 1.06699 0.97826 0.99712 1.22942 1.00218 0.97337 0.87331 1.48050 1.34411 1.18785 1.14394 1.21787 1.01598 0.84543 0.95756 1.76955 1.13896 0.98851 1.23869 1.22307 0.96403 0.96037 0.90751 1.20226 0.98365 0.92063 1.02616 0.95537 0.89040 0.94764 0.89018 0.94577 0.92289 0.80647 0.90985 0.89715 0.89587 0.90807 0.91427 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.74 37.16 0.36 -2.84 16 2 C 0.12 2.72 5.09 -4.04 -0.02 2.70 16 3 N -0.43 -11.13 2.64 -116.05 -0.31 -11.43 16 4 C -0.31 -8.60 9.37 -14.98 -0.14 -8.74 16 5 H 0.11 3.13 7.37 -52.49 -0.39 2.74 16 6 C 0.04 0.90 4.70 -17.45 -0.08 0.82 16 7 N -0.85 -21.73 9.13 55.50 0.51 -21.22 16 8 Si 0.91 20.12 29.66 -169.99 -5.04 15.08 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.51 13.07 7.19 -12.55 -0.09 12.98 16 13 O -0.59 -16.98 15.90 5.25 0.08 -16.90 16 14 C -0.23 -4.99 4.85 -105.06 -0.51 -5.50 16 15 C 0.07 1.22 9.48 -16.53 -0.16 1.06 16 16 N -0.38 -5.98 3.98 -67.57 -0.27 -6.25 16 17 C 0.10 1.04 11.44 59.85 0.68 1.73 16 18 N -0.31 -5.79 12.50 33.90 0.42 -5.37 16 19 C 0.11 2.23 7.26 -82.01 -0.60 1.63 16 20 C -0.07 -1.30 10.28 36.00 0.37 -0.93 16 21 H 0.03 0.57 7.80 -51.93 -0.41 0.16 16 22 H 0.09 2.25 6.41 -51.93 -0.33 1.92 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 2.17 5.91 -51.93 -0.31 1.87 16 25 H 0.04 0.71 4.62 -51.93 -0.24 0.47 16 26 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 27 H 0.18 2.61 7.27 -52.49 -0.38 2.23 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.76 7.25 -51.93 -0.38 1.39 16 LS Contribution 278.33 15.07 4.19 4.19 Total: -1.00 -32.28 278.33 -4.69 -36.97 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.10 Total: 2.01 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -0.18 Total: 2.92 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.35 Total: -44.27 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: 0.08 Total: -16.90 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.04 Total: 15.08 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.28 -4.69 -36.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113038503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.972 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds