Wall clock time and date at job start Thu Apr 9 2020 12:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47452 * 2 1 4 4 C 1.34259 * 125.75446 * 124.99761 * 3 2 1 5 5 C 1.38044 * 107.41878 * 180.02562 * 4 3 2 6 6 C 1.47431 * 126.41606 * 179.97438 * 5 4 3 7 7 O 1.21601 * 120.00003 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99891 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00015 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46733 * 325.00143 * 9 8 6 11 11 C 1.53000 * 109.47145 * 84.99707 * 9 8 6 12 12 C 1.50694 * 109.47115 * 204.99781 * 9 8 6 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.41291 * 107.17000 * 0.24698 * 5 4 3 21 21 N 1.30449 * 108.02113 * 359.58424 * 20 5 4 22 22 H 1.09000 * 109.46721 * 300.00017 * 1 2 3 23 23 H 1.09004 * 109.46729 * 60.00023 * 1 2 3 24 24 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47229 * 239.99813 * 2 1 3 26 26 H 1.08999 * 109.47149 * 120.00173 * 2 1 3 27 27 H 1.07998 * 126.29381 * 0.02765 * 4 3 2 28 28 H 0.97005 * 120.00104 * 359.97438 * 8 6 5 29 29 H 1.09007 * 109.47356 * 300.00099 * 11 9 8 30 30 H 1.09000 * 109.47156 * 59.99824 * 11 9 8 31 31 H 1.08997 * 109.47359 * 180.02562 * 11 9 8 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 33 33 H 1.07997 * 125.99244 * 179.73595 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9124 0.8925 5 6 3.0707 3.2310 0.5371 6 6 3.9316 4.2037 1.2346 7 8 4.5495 3.8672 2.2263 8 7 4.0337 5.4658 0.7729 9 6 4.8896 6.4321 1.4655 10 1 4.8570 6.2426 2.5385 11 6 6.3286 6.2889 0.9659 12 6 4.3977 7.8290 1.1869 13 1 3.5342 7.9818 0.5565 14 6 5.0508 8.9122 1.7359 15 7 6.1026 8.7262 2.5031 16 14 4.4415 10.6438 1.3898 17 1 5.3091 11.6234 2.0921 18 1 4.4859 10.9013 -0.0720 19 1 3.0449 10.7833 1.8748 20 6 2.2925 3.4757 -0.6165 21 7 1.6765 2.3694 -0.9299 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.3140 1.4020 1.7339 28 1 3.5410 5.7341 -0.0185 29 1 6.6844 5.2785 1.1675 30 1 6.3612 6.4782 -0.1071 31 1 6.9655 7.0076 1.4815 32 1 6.5623 9.4883 2.8890 33 1 2.2221 4.4135 -1.1474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114321586.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:03 Heat of formation + Delta-G solvation = 30.185304 kcal Electronic energy + Delta-G solvation = -16295.893796 eV Core-core repulsion = 13551.178517 eV Total energy + Delta-G solvation = -2744.715279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17190 -38.31357 -34.67847 -34.56411 -32.27853 -30.44386 -29.92365 -28.27823 -25.19152 -24.12504 -22.76458 -20.72127 -20.37278 -19.16269 -17.85054 -16.40222 -15.63350 -15.28094 -15.15224 -14.48257 -14.30488 -14.03110 -13.54409 -13.09055 -12.70435 -12.50695 -12.35187 -12.25469 -11.72915 -11.57612 -11.05190 -10.90975 -10.83391 -10.63836 -10.26227 -10.16702 -9.49426 -9.00028 -8.97473 -8.51292 -8.46737 -7.76117 -6.06441 -4.15264 1.76785 2.37775 2.46370 3.29980 3.34864 3.36395 4.16183 4.19633 4.35437 4.55955 4.67824 4.83416 4.91099 5.02221 5.25763 5.30125 5.42370 5.58161 5.63855 5.83952 6.08246 6.57272 6.90819 6.91980 7.05813 7.23515 7.56262 7.62935 7.67537 7.78803 8.00317 8.22225 8.78582 8.87058 9.26442 9.52699 10.99605 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047939 B = 0.004916 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.929518 B = 5694.766522 C = 6040.583300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.368 5.368 4 C 0.114 3.886 5 C -0.278 4.278 6 C 0.578 3.422 7 O -0.566 6.566 8 N -0.704 5.704 9 C 0.265 3.735 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.533 4.533 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.884 5.884 16 Si 0.901 3.099 17 H -0.286 1.286 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.080 3.920 21 N -0.303 5.303 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.185 0.815 28 H 0.387 0.613 29 H 0.015 0.985 30 H 0.026 0.974 31 H 0.089 0.911 32 H 0.264 0.736 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 -14.460 -5.691 17.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.149 5.149 4 C -0.036 4.036 5 C -0.293 4.293 6 C 0.364 3.636 7 O -0.447 6.447 8 N -0.351 5.351 9 C 0.164 3.836 10 H 0.067 0.933 11 C -0.205 4.205 12 C -0.571 4.571 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.522 5.522 16 Si 0.729 3.271 17 H -0.212 1.212 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.108 4.108 21 N -0.124 5.124 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.202 0.798 28 H 0.219 0.781 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.840 -15.268 -5.686 18.536 hybrid contribution 0.058 1.472 0.001 1.474 sum -8.783 -13.796 -5.685 17.314 Atomic orbital electron populations 1.22056 0.93674 1.02801 1.03786 1.21738 0.96205 0.77363 1.03950 1.48547 1.35002 1.10384 1.20920 1.22948 0.92168 0.93941 0.94551 1.20662 1.10361 0.95524 1.02738 1.17264 0.80677 0.82080 0.83570 1.90711 1.48058 1.79023 1.26890 1.46311 1.47749 1.10215 1.30790 1.18724 0.86177 0.85354 0.93365 0.93328 1.22078 1.00199 0.98984 0.99279 1.21201 1.13867 0.90283 1.31764 0.92102 1.24884 0.94774 0.99309 0.94737 1.69900 1.19269 1.31081 1.31940 0.86513 0.78708 0.83476 0.78411 1.21188 1.20171 1.20202 1.24110 0.94105 0.97249 0.95317 1.77055 1.24414 0.97164 1.13721 0.91945 0.90997 0.90725 0.89627 0.88454 0.79826 0.78065 0.96629 0.95494 0.89212 0.92584 0.79379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.09 37.16 0.37 -0.82 16 2 C 0.13 1.01 7.21 -4.04 -0.03 0.98 16 3 N -0.37 -4.60 3.65 -60.81 -0.22 -4.82 16 4 C 0.11 1.61 11.25 -16.56 -0.19 1.43 16 5 C -0.28 -4.70 6.13 -105.06 -0.64 -5.34 16 6 C 0.58 12.31 7.78 -12.52 -0.10 12.21 16 7 O -0.57 -14.08 16.56 5.28 0.09 -13.99 16 8 N -0.70 -15.28 5.06 -56.01 -0.28 -15.56 16 9 C 0.27 6.93 2.56 -69.09 -0.18 6.75 16 10 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 11 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 12 C -0.53 -14.32 8.73 -34.44 -0.30 -14.62 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -25.19 11.32 55.43 0.63 -24.57 16 16 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.08 1.17 11.50 -16.98 -0.20 0.98 16 21 N -0.30 -4.37 12.33 30.86 0.38 -3.99 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.10 0.53 8.06 -51.93 -0.42 0.11 16 27 H 0.18 2.20 8.06 -52.49 -0.42 1.77 16 28 H 0.39 7.24 7.49 -40.82 -0.31 6.93 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.19 2.29 7.50 -52.49 -0.39 1.89 16 LS Contribution 289.24 15.07 4.36 4.36 Total: -1.00 -33.06 289.24 -5.40 -38.46 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.33 Total: 4.44 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.00 Total: -0.13 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.50 Total: -48.94 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.06 -5.40 -38.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114321586.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.646 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds