Wall clock time and date at job start Thu Apr 9 2020 12:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47452 * 2 1 4 4 C 1.34259 * 125.75446 * 124.99761 * 3 2 1 5 5 C 1.38044 * 107.41878 * 180.02562 * 4 3 2 6 6 C 1.47431 * 126.41606 * 179.97438 * 5 4 3 7 7 O 1.21601 * 120.00003 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99891 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00015 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46733 * 325.00143 * 9 8 6 11 11 C 1.53000 * 109.47145 * 84.99707 * 9 8 6 12 12 C 1.50694 * 109.47115 * 204.99781 * 9 8 6 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.41291 * 107.17000 * 0.24698 * 5 4 3 21 21 N 1.30449 * 108.02113 * 359.58424 * 20 5 4 22 22 H 1.09000 * 109.46721 * 300.00017 * 1 2 3 23 23 H 1.09004 * 109.46729 * 60.00023 * 1 2 3 24 24 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47229 * 239.99813 * 2 1 3 26 26 H 1.08999 * 109.47149 * 120.00173 * 2 1 3 27 27 H 1.07998 * 126.29381 * 0.02765 * 4 3 2 28 28 H 0.97005 * 120.00104 * 359.97438 * 8 6 5 29 29 H 1.09007 * 109.47356 * 300.00099 * 11 9 8 30 30 H 1.09000 * 109.47156 * 59.99824 * 11 9 8 31 31 H 1.08997 * 109.47359 * 180.02562 * 11 9 8 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 33 33 H 1.07997 * 125.99244 * 179.73595 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8691 1.9124 0.8925 5 6 3.0707 3.2310 0.5371 6 6 3.9316 4.2037 1.2346 7 8 4.5495 3.8672 2.2263 8 7 4.0337 5.4658 0.7729 9 6 4.8896 6.4321 1.4655 10 1 4.8570 6.2426 2.5385 11 6 6.3286 6.2889 0.9659 12 6 4.3977 7.8290 1.1869 13 1 3.5342 7.9818 0.5565 14 6 5.0508 8.9122 1.7359 15 7 6.1026 8.7262 2.5031 16 14 4.4415 10.6438 1.3898 17 1 5.3091 11.6234 2.0921 18 1 4.4859 10.9013 -0.0720 19 1 3.0449 10.7833 1.8748 20 6 2.2925 3.4757 -0.6165 21 7 1.6765 2.3694 -0.9299 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.3140 1.4020 1.7339 28 1 3.5410 5.7341 -0.0185 29 1 6.6844 5.2785 1.1675 30 1 6.3612 6.4782 -0.1071 31 1 6.9655 7.0076 1.4815 32 1 6.5623 9.4883 2.8890 33 1 2.2221 4.4135 -1.1474 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114321586.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:02 Heat of formation + Delta-G solvation = 6.889442 kcal Electronic energy + Delta-G solvation = -16296.903981 eV Core-core repulsion = 13551.178517 eV Total energy + Delta-G solvation = -2745.725463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.30451 -40.03200 -36.62675 -35.42987 -34.22536 -31.60422 -31.32939 -29.81225 -27.30147 -25.07243 -24.13959 -22.32878 -21.53642 -20.80881 -19.27865 -18.01746 -17.07973 -16.77432 -16.55896 -16.01421 -15.67933 -15.27387 -14.80975 -14.61019 -14.39253 -13.73640 -13.63464 -13.36020 -12.98638 -12.93473 -12.81895 -12.69519 -12.43684 -12.22738 -12.12872 -11.84329 -11.07517 -10.73407 -10.53718 -10.53519 -9.87831 -9.47577 -8.13760 -6.31043 0.60207 1.21688 1.45081 1.48012 1.50173 1.57810 2.40296 2.63298 2.77037 3.16681 3.53304 3.84673 4.05943 4.10836 4.22343 4.37963 4.46210 4.73521 4.81227 4.86809 4.90932 4.98097 5.14178 5.23421 5.43900 5.50030 5.66165 5.74951 5.93175 5.97055 6.14141 6.54371 6.76526 7.06754 7.36343 7.63196 8.92621 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047939 B = 0.004916 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.929518 B = 5694.766522 C = 6040.583300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.356 5.356 4 C 0.129 3.871 5 C -0.312 4.312 6 C 0.578 3.422 7 O -0.611 6.611 8 N -0.701 5.701 9 C 0.271 3.729 10 H -0.001 1.001 11 C -0.133 4.133 12 C -0.547 4.547 13 H 0.074 0.926 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.973 3.027 17 H -0.286 1.286 18 H -0.264 1.264 19 H -0.271 1.271 20 C 0.083 3.917 21 N -0.315 5.315 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.205 0.795 28 H 0.403 0.597 29 H 0.011 0.989 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 -15.287 -7.024 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.136 5.136 4 C -0.024 4.024 5 C -0.327 4.327 6 C 0.367 3.633 7 O -0.495 6.495 8 N -0.349 5.349 9 C 0.168 3.832 10 H 0.017 0.983 11 C -0.192 4.192 12 C -0.586 4.586 13 H 0.092 0.908 14 C -0.185 4.185 15 N -0.556 5.556 16 Si 0.798 3.202 17 H -0.212 1.212 18 H -0.188 1.188 19 H -0.196 1.196 20 C -0.104 4.104 21 N -0.135 5.135 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.146 0.854 27 H 0.222 0.778 28 H 0.238 0.762 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.382 -16.132 -7.074 20.447 hybrid contribution 0.480 1.565 0.433 1.694 sum -9.902 -14.567 -6.641 18.824 Atomic orbital electron populations 1.22029 0.93108 1.04324 1.02347 1.22271 0.96686 0.75063 1.06345 1.48971 1.33600 1.11505 1.19488 1.23241 0.91322 0.93146 0.94668 1.20320 1.12048 0.95915 1.04460 1.17811 0.80334 0.82210 0.82975 1.90674 1.50091 1.79743 1.28988 1.46040 1.47596 1.10040 1.31173 1.18346 0.87298 0.86478 0.91085 0.98294 1.21900 0.99618 0.98021 0.99660 1.21530 1.14347 0.90649 1.32025 0.90808 1.25804 0.94793 1.03628 0.94323 1.70054 1.20471 1.32284 1.32832 0.85382 0.78073 0.78016 0.78756 1.21183 1.18821 1.19630 1.24368 0.93267 0.98211 0.94555 1.77039 1.24579 0.97426 1.14448 0.93042 0.92695 0.87752 0.87987 0.85375 0.77821 0.76212 0.96959 0.94124 0.91397 0.92559 0.77543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.09 71.98 0.73 -1.15 16 2 C 0.11 1.42 7.21 86.38 0.62 2.05 16 3 N -0.36 -8.03 3.65 -346.29 -1.26 -9.29 16 4 C 0.13 3.42 11.25 84.28 0.95 4.36 16 5 C -0.31 -10.32 6.13 -20.15 -0.12 -10.45 16 6 C 0.58 24.97 7.78 86.66 0.67 25.64 16 7 O -0.61 -31.36 16.56 -4.03 -0.07 -31.43 16 8 N -0.70 -30.77 5.06 -449.38 -2.27 -33.04 16 9 C 0.27 14.54 2.56 44.24 0.11 14.66 16 10 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 11 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 12 C -0.55 -29.53 8.73 25.60 0.22 -29.30 16 13 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 14 C 0.01 0.79 5.30 84.66 0.45 1.24 16 15 N -0.92 -53.34 11.32 21.45 0.24 -53.09 16 16 Si 0.97 42.40 29.54 68.60 2.03 44.42 16 17 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 C 0.08 2.33 11.50 85.65 0.99 3.32 16 21 N -0.31 -8.45 12.33 -56.28 -0.69 -9.15 16 22 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 24 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.13 0.85 8.06 -2.39 -0.02 0.83 16 27 H 0.21 4.45 8.06 -2.91 -0.02 4.43 16 28 H 0.40 14.88 7.49 -92.70 -0.69 14.19 16 29 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 32 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.21 4.68 7.50 -2.91 -0.02 4.66 16 Total: -1.00 -72.86 289.24 3.67 -69.18 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.42 Total: 18.32 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 5.29 Total: 4.07 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -3.99 Total: -104.57 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.07 Total: -31.43 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -72.86 3.67 -69.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114321586.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.071 kcal (2) G-P(sol) polarization free energy of solvation -72.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds