Wall clock time and date at job start Thu Apr 9 2020 12:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47707 * 2 1 4 4 C 1.34259 * 125.75847 * 125.26337 * 3 2 1 5 5 C 1.38043 * 107.41630 * 180.14947 * 4 3 2 6 6 C 1.47436 * 126.41388 * 179.87291 * 5 4 3 7 7 O 1.21602 * 120.00091 * 359.71054 * 6 5 4 8 8 N 1.34773 * 119.99867 * 179.43959 * 6 5 4 9 9 C 1.46496 * 119.99973 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47522 * 34.99294 * 9 8 6 11 11 C 1.53003 * 109.47081 * 274.99656 * 9 8 6 12 12 C 1.50697 * 109.47585 * 154.99926 * 9 8 6 13 13 H 1.08007 * 119.99840 * 359.97438 * 12 9 8 14 14 C 1.37879 * 120.00320 * 180.02562 * 12 9 8 15 15 N 1.31506 * 120.00019 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99873 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.47569 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47106 * 119.99943 * 16 14 12 19 19 H 1.48495 * 109.47104 * 239.99627 * 16 14 12 20 20 C 1.41289 * 107.17187 * 359.61106 * 5 4 3 21 21 N 1.30447 * 108.02228 * 0.24022 * 20 5 4 22 22 H 1.09001 * 109.47169 * 59.99796 * 1 2 3 23 23 H 1.09003 * 109.47105 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46788 * 300.00153 * 1 2 3 25 25 H 1.09000 * 109.47366 * 239.99499 * 2 1 3 26 26 H 1.09004 * 109.47446 * 119.99757 * 2 1 3 27 27 H 1.07998 * 126.29227 * 359.97438 * 4 3 2 28 28 H 0.97004 * 120.00018 * 359.97438 * 8 6 5 29 29 H 1.09005 * 109.47186 * 59.99834 * 11 9 8 30 30 H 1.09002 * 109.47333 * 179.97438 * 11 9 8 31 31 H 1.09001 * 109.47319 * 299.99854 * 11 9 8 32 32 H 0.97001 * 120.00191 * 180.02562 * 15 14 12 33 33 H 1.08007 * 125.98759 * 180.20463 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8730 1.9111 0.8896 5 6 3.0708 3.2310 0.5369 6 6 3.9324 4.2034 1.2338 7 8 4.5501 3.8671 2.2258 8 7 4.0397 5.4636 0.7682 9 6 4.8962 6.4298 1.4603 10 1 5.7711 5.9180 1.8612 11 6 4.1141 7.0759 2.6057 12 6 5.3379 7.4950 0.4902 13 1 5.0135 7.4560 -0.5392 14 6 6.1572 8.5188 0.9165 15 7 6.5527 8.5661 2.1697 16 14 6.7052 9.8388 -0.2864 17 1 6.1276 9.5590 -1.6255 18 1 6.2369 11.1659 0.1878 19 1 8.1874 9.8406 -0.3777 20 6 2.2978 3.4738 -0.6206 21 7 1.6772 2.3690 -0.9305 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.3210 1.3996 1.7287 28 1 3.5503 5.7307 -0.0256 29 1 3.7946 6.3054 3.3075 30 1 4.7515 7.7944 3.1210 31 1 3.2392 7.5877 2.2050 32 1 7.1287 9.2866 2.4697 33 1 2.2318 4.4102 -1.1548 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114321589.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:05 Heat of formation + Delta-G solvation = 30.102081 kcal Electronic energy + Delta-G solvation = -16295.913559 eV Core-core repulsion = 13551.194671 eV Total energy + Delta-G solvation = -2744.718888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17201 -38.31440 -34.68040 -34.56537 -32.28146 -30.44495 -29.92528 -28.28041 -25.19583 -24.12564 -22.76550 -20.72284 -20.37369 -19.16170 -17.85062 -16.40891 -15.65000 -15.26824 -15.14830 -14.49667 -14.30647 -13.94506 -13.69509 -12.94635 -12.69350 -12.60333 -12.35748 -12.25821 -11.68873 -11.61472 -11.04901 -10.92637 -10.82284 -10.64057 -10.23883 -10.17818 -9.49444 -8.99943 -8.96256 -8.51561 -8.47444 -7.76180 -6.06965 -4.15571 1.76802 2.37803 2.46280 3.27640 3.35349 3.38384 4.16018 4.19684 4.35361 4.55776 4.67627 4.83272 4.91074 5.02211 5.25538 5.29923 5.42129 5.58054 5.63731 5.83516 6.08213 6.57255 6.90727 6.91822 7.05605 7.23382 7.56134 7.62942 7.67709 7.78619 8.00169 8.21914 8.78692 8.87047 9.26414 9.52557 10.99192 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051429 B = 0.004867 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.313746 B = 5752.158810 C = 6067.410642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.128 3.872 3 N -0.368 5.368 4 C 0.114 3.886 5 C -0.278 4.278 6 C 0.578 3.422 7 O -0.566 6.566 8 N -0.704 5.704 9 C 0.265 3.735 10 H 0.049 0.951 11 C -0.147 4.147 12 C -0.531 4.531 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.901 3.099 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.080 3.920 21 N -0.303 5.303 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.185 0.815 28 H 0.387 0.613 29 H 0.015 0.985 30 H 0.089 0.911 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.279 -13.884 -4.468 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.149 5.149 4 C -0.036 4.036 5 C -0.293 4.293 6 C 0.364 3.636 7 O -0.447 6.447 8 N -0.351 5.351 9 C 0.163 3.837 10 H 0.067 0.933 11 C -0.205 4.205 12 C -0.570 4.570 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.729 3.271 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.108 4.108 21 N -0.124 5.124 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.202 0.798 28 H 0.219 0.781 29 H 0.034 0.966 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -10.569 -14.686 -4.450 18.633 hybrid contribution 0.648 1.273 -0.403 1.484 sum -9.921 -13.413 -4.853 17.374 Atomic orbital electron populations 1.22053 0.93675 1.02799 1.03767 1.21736 0.96200 0.77368 1.03959 1.48548 1.34828 1.10405 1.21077 1.22948 0.92131 0.93905 0.94621 1.20662 1.10451 0.95506 1.02665 1.17265 0.80725 0.81980 0.83622 1.90711 1.47821 1.79187 1.26967 1.46309 1.47887 1.10493 1.30372 1.18736 0.88665 0.85758 0.90542 0.93315 1.22076 0.99613 1.00080 0.98755 1.21277 1.30881 1.08893 0.95917 0.91993 1.24885 0.95678 0.97837 0.95351 1.69915 1.34627 1.32696 1.14937 0.86403 0.78422 0.81301 0.81019 1.19720 1.20925 1.20938 1.24111 0.94157 0.97287 0.95229 1.77055 1.24423 0.97251 1.13623 0.90993 0.90723 0.91968 0.89627 0.88455 0.79826 0.78058 0.96633 0.89219 0.95490 0.92699 0.79377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.09 37.16 0.37 -0.81 16 2 C 0.13 1.01 7.21 -4.05 -0.03 0.98 16 3 N -0.37 -4.60 3.65 -60.81 -0.22 -4.82 16 4 C 0.11 1.61 11.25 -16.56 -0.19 1.43 16 5 C -0.28 -4.70 6.13 -105.06 -0.64 -5.34 16 6 C 0.58 12.31 7.78 -12.52 -0.10 12.21 16 7 O -0.57 -14.07 16.56 5.28 0.09 -13.99 16 8 N -0.70 -15.27 5.06 -56.01 -0.28 -15.56 16 9 C 0.26 6.90 2.56 -69.08 -0.18 6.72 16 10 H 0.05 1.46 7.57 -51.93 -0.39 1.07 16 11 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 12 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 15 N -0.88 -25.18 11.32 55.43 0.63 -24.55 16 16 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 C 0.08 1.17 11.50 -16.98 -0.20 0.98 16 21 N -0.30 -4.37 12.33 30.86 0.38 -3.99 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.53 8.06 -51.93 -0.42 0.11 16 27 H 0.18 2.20 8.06 -52.49 -0.42 1.77 16 28 H 0.39 7.24 7.49 -40.82 -0.31 6.94 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.19 2.29 7.50 -52.48 -0.39 1.89 16 LS Contribution 289.25 15.07 4.36 4.36 Total: -1.00 -33.09 289.25 -5.40 -38.49 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.33 Total: 4.36 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.01 Total: -0.12 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.50 Total: -48.92 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.09 -5.40 -38.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114321589.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.597 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds