Wall clock time and date at job start Thu Apr 9 2020 12:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46915 * 2 1 4 4 C 1.50695 * 109.46979 * 120.00521 * 2 1 3 5 5 O 1.21297 * 119.99358 * 239.99998 * 4 2 1 6 6 N 1.34771 * 120.00677 * 60.00219 * 4 2 1 7 7 C 1.40154 * 120.00504 * 179.97438 * 6 4 2 8 8 C 1.40411 * 125.97106 * 0.02562 * 7 6 4 9 9 C 1.35241 * 107.86611 * 179.74212 * 8 7 6 10 10 N 1.34965 * 107.86302 * 0.38043 * 9 8 7 11 11 C 1.46495 * 125.97869 * 179.87777 * 10 9 8 12 12 C 1.50702 * 109.47571 * 124.71943 * 11 10 9 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 N 1.31221 * 125.97729 * 179.97438 * 7 6 4 21 21 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47357 * 299.99792 * 1 2 3 23 23 H 1.09000 * 109.47473 * 60.00186 * 1 2 3 24 24 H 1.09000 * 109.46481 * 240.00155 * 2 1 3 25 25 H 1.08995 * 109.47387 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47244 * 300.00485 * 3 2 1 27 27 H 1.09004 * 109.47018 * 60.00121 * 3 2 1 28 28 H 0.97004 * 119.99445 * 359.97438 * 6 4 2 29 29 H 1.07998 * 126.06914 * 359.97438 * 8 7 6 30 30 H 1.08001 * 126.07068 * 180.26820 * 9 8 7 31 31 H 1.09000 * 109.47378 * 4.71603 * 11 10 9 32 32 H 1.09001 * 109.47153 * 244.71723 * 11 10 9 33 33 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7297 -0.1210 2.0288 6 7 1.7068 -2.0008 1.4436 7 6 2.1744 -2.6617 2.5877 8 6 2.9851 -2.1036 3.5891 9 6 3.2112 -3.0584 4.5199 10 7 2.5774 -4.1819 4.1229 11 6 2.5630 -5.4603 4.8381 12 6 1.1374 -5.8836 5.0820 13 1 0.3234 -5.2621 4.7390 14 6 0.8722 -7.0635 5.7440 15 7 -0.3719 -7.4302 5.9617 16 14 2.2800 -8.1381 6.3380 17 1 2.6421 -9.1111 5.2762 18 1 3.4555 -7.2860 6.6503 19 1 1.8618 -8.8714 7.5597 20 7 1.9305 -3.9100 2.9106 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.1489 -2.4721 0.8052 29 1 3.3583 -1.0905 3.6139 30 1 3.7966 -2.9429 5.4201 31 1 3.0772 -5.3485 5.7927 32 1 3.0693 -6.2174 4.2393 33 1 -0.5585 -8.2584 6.4309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117717099.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:08 Heat of formation + Delta-G solvation = 38.027381 kcal Electronic energy + Delta-G solvation = -16293.665665 eV Core-core repulsion = 13549.290444 eV Total energy + Delta-G solvation = -2744.375221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77575 -39.46944 -34.82272 -34.62808 -33.22657 -31.21485 -29.40666 -27.41535 -27.10592 -24.25559 -22.40870 -21.07204 -19.97001 -19.34360 -17.10003 -17.06315 -16.51783 -15.54640 -15.39464 -14.54713 -14.38923 -13.97557 -13.57145 -13.11471 -12.92832 -12.58078 -12.44200 -12.36509 -12.10066 -12.02124 -11.35701 -11.25111 -11.13540 -10.88252 -10.50594 -10.07987 -9.97392 -9.56533 -9.48933 -8.77207 -8.18971 -7.52901 -6.23991 -4.26392 2.31886 2.74862 2.87651 3.16009 3.20979 3.24078 3.68198 3.79437 4.22390 4.52848 4.70582 4.78112 5.03940 5.16121 5.41491 5.45893 5.53362 5.65162 5.71541 5.74809 5.96856 6.08524 6.21923 6.39329 6.44440 6.57056 6.64712 7.24693 7.37218 7.58132 7.81430 8.26746 8.33248 8.56856 8.85670 9.30939 10.88729 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051497 B = 0.004904 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.591066 B = 5708.039873 C = 6073.882355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.132 4.132 4 C 0.521 3.479 5 O -0.519 6.519 6 N -0.631 5.631 7 C 0.259 3.741 8 C -0.284 4.284 9 C 0.051 3.949 10 N -0.319 5.319 11 C 0.232 3.768 12 C -0.535 4.535 13 H 0.085 0.915 14 C 0.076 3.924 15 N -0.888 5.888 16 Si 0.875 3.125 17 H -0.272 1.272 18 H -0.265 1.265 19 H -0.280 1.280 20 N -0.298 5.298 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.411 0.589 29 H 0.161 0.839 30 H 0.169 0.831 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 12.636 -10.416 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.190 4.190 4 C 0.307 3.693 5 O -0.392 6.392 6 N -0.279 5.279 7 C 0.005 3.995 8 C -0.315 4.315 9 C -0.098 4.098 10 N -0.101 5.101 11 C 0.113 3.887 12 C -0.573 4.573 13 H 0.103 0.897 14 C -0.127 4.127 15 N -0.525 5.525 16 Si 0.701 3.299 17 H -0.197 1.197 18 H -0.190 1.190 19 H -0.206 1.206 20 N -0.129 5.129 21 H 0.081 0.919 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.246 0.754 29 H 0.179 0.821 30 H 0.186 0.814 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.731 11.729 -10.028 16.141 hybrid contribution 0.642 -0.363 0.354 0.818 sum 5.372 11.366 -9.674 15.863 Atomic orbital electron populations 1.21833 0.92669 1.02916 1.03119 1.21282 0.97762 0.98013 0.96031 1.21618 1.01866 0.93298 1.02207 1.20751 0.80088 0.80536 0.87920 1.90628 1.36804 1.65538 1.46278 1.42570 1.51586 1.11695 1.22012 1.19177 0.98688 0.91851 0.89742 1.21550 1.10955 1.02377 0.96657 1.22558 0.99735 0.87118 1.00413 1.48615 1.35400 1.10903 1.15191 1.20053 1.00256 0.77710 0.90694 1.21112 0.90236 1.07658 1.38288 0.89663 1.24832 0.95763 0.96987 0.95160 1.69873 1.18259 1.23516 1.40860 0.86884 0.82576 0.81340 0.79114 1.19697 1.18962 1.20578 1.77391 1.21104 1.13216 1.01166 0.91861 0.91773 0.91230 0.88236 0.91840 0.91973 0.91754 0.75350 0.82142 0.81398 0.92897 0.94473 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.09 37.16 0.34 -0.85 16 2 C -0.11 -1.02 3.26 -91.77 -0.30 -1.32 16 3 C -0.13 -1.18 8.48 37.16 0.32 -0.86 16 4 C 0.52 7.38 7.12 -10.99 -0.08 7.30 16 5 O -0.52 -8.99 13.11 5.54 0.07 -8.92 16 6 N -0.63 -9.77 5.34 -11.13 -0.06 -9.83 16 7 C 0.26 5.22 8.11 -154.39 -1.25 3.97 16 8 C -0.28 -5.61 9.61 -39.83 -0.38 -5.99 16 9 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 10 N -0.32 -7.30 3.67 -62.56 -0.23 -7.53 16 11 C 0.23 5.53 5.33 -5.20 -0.03 5.50 16 12 C -0.53 -15.16 9.79 -34.44 -0.34 -15.49 16 13 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 14 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 15 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 16 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 N -0.30 -6.89 12.42 31.44 0.39 -6.50 16 21 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.41 5.23 8.24 -40.82 -0.34 4.89 16 29 H 0.16 3.07 5.92 -52.49 -0.31 2.76 16 30 H 0.17 2.60 8.06 -52.49 -0.42 2.18 16 31 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 32 H 0.04 0.87 7.57 -51.93 -0.39 0.48 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 284.01 15.07 4.28 4.28 Total: -1.00 -33.58 284.01 -5.81 -39.39 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.35 Total: 4.37 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.02 Total: -4.90 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.88 Total: -49.72 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.58 -5.81 -39.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117717099.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.415 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds