Wall clock time and date at job start Thu Apr 9 2020 12:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33088 * 1 3 3 C 1.51274 * 121.23983 * 2 1 4 4 C 1.50705 * 108.78632 * 221.90397 * 3 2 1 5 5 C 1.33244 * 121.22713 * 332.18061 * 4 3 2 6 6 F 1.35099 * 119.10502 * 180.15494 * 5 4 3 7 7 C 1.46163 * 121.79217 * 0.42846 * 5 4 3 8 8 C 1.36207 * 119.65112 * 15.92596 * 7 5 4 9 9 N 1.39083 * 121.20648 * 179.34964 * 8 7 5 10 10 C 1.46499 * 119.99904 * 359.95930 * 9 8 7 11 11 H 1.09004 * 109.47237 * 34.99506 * 10 9 8 12 12 C 1.50699 * 109.47014 * 154.99519 * 10 9 8 13 13 H 1.07998 * 119.99931 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99788 * 179.97438 * 12 10 9 15 15 N 1.31513 * 120.00424 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99894 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46869 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47017 * 120.00074 * 16 14 12 19 19 H 1.48499 * 109.47204 * 240.00288 * 16 14 12 20 20 C 1.52997 * 109.47183 * 274.99939 * 10 9 8 21 21 C 1.52996 * 109.47521 * 64.99767 * 20 10 9 22 22 H 1.07998 * 120.00091 * 0.02562 * 1 2 3 23 23 H 1.08005 * 120.00357 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.59077 * 102.11142 * 3 2 1 25 25 H 1.08997 * 109.58608 * 341.69480 * 3 2 1 26 26 H 1.08000 * 119.39203 * 152.20272 * 4 3 2 27 27 H 1.07995 * 120.17313 * 195.90515 * 7 5 4 28 28 H 0.96996 * 119.99601 * 179.97438 * 9 8 7 29 29 H 0.96998 * 120.00508 * 179.97438 * 15 14 12 30 30 H 1.08999 * 109.47349 * 185.00014 * 20 10 9 31 31 H 1.09000 * 109.46912 * 305.00076 * 20 10 9 32 32 H 1.08998 * 109.47608 * 179.97438 * 21 20 10 33 33 H 1.09000 * 109.47519 * 300.00588 * 21 20 10 34 34 H 1.09000 * 109.46776 * 60.00225 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.1154 1.2934 0.0000 4 6 3.2750 1.1576 -0.9529 5 6 3.8220 -0.0297 -1.2107 6 9 4.8621 -0.1015 -2.0698 7 6 3.3234 -1.2574 -0.5938 8 6 2.0973 -1.2636 -0.0005 9 7 1.5857 -2.4171 0.5844 10 6 2.3682 -3.6554 0.5687 11 1 3.4276 -3.4170 0.6639 12 6 1.9451 -4.5317 1.7194 13 1 1.1705 -4.1995 2.3946 14 6 2.5463 -5.7578 1.9096 15 7 3.4893 -6.1625 1.0870 16 14 2.0213 -6.8444 3.3356 17 1 0.9497 -6.1649 4.1071 18 1 1.5101 -8.1363 2.8114 19 1 3.1864 -7.0958 4.2214 20 6 2.1283 -4.3937 -0.7497 21 6 2.6718 -3.5567 -1.9093 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5401 -0.9353 -0.0004 24 1 2.4892 1.4942 1.0041 25 1 1.4713 2.1114 -0.3225 26 1 3.6704 2.0391 -1.4356 27 1 3.9238 -2.1550 -0.6087 28 1 0.7106 -2.4016 1.0025 29 1 3.9125 -7.0250 1.2210 30 1 2.6394 -5.3561 -0.7255 31 1 1.0588 -4.5536 -0.8871 32 1 2.5013 -4.0828 -2.8485 33 1 2.1608 -2.5942 -1.9336 34 1 3.7412 -3.3968 -1.7719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158943.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:04 Heat of formation + Delta-G solvation = -6.278600 kcal Electronic energy + Delta-G solvation = -16936.844028 eV Core-core repulsion = 14170.627594 eV Total energy + Delta-G solvation = -2766.216434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.24821 -38.60712 -35.82051 -32.81143 -32.06919 -30.74817 -29.19732 -26.50690 -25.52751 -23.11924 -22.01071 -20.25431 -19.43247 -17.65692 -16.48744 -15.71472 -15.45340 -15.04254 -14.86008 -14.56831 -14.18094 -13.64507 -13.30361 -13.02932 -12.75949 -12.34389 -11.92667 -11.59165 -11.47786 -11.29567 -11.09163 -10.99111 -10.55736 -10.43442 -10.16574 -10.10654 -9.58611 -9.10326 -9.05754 -8.62304 -8.29105 -6.34963 -6.20580 -4.30040 1.44404 2.54327 3.18804 3.27230 3.29754 3.67668 4.13072 4.37166 4.83936 4.89362 5.10990 5.30110 5.58968 5.59535 5.86265 5.92129 6.02936 6.23070 6.30285 6.46559 6.49692 6.53291 6.65608 6.88198 6.94881 7.00107 7.05678 7.21672 7.38851 7.50640 7.63000 7.79076 8.02038 8.25998 8.60122 8.81417 9.37082 10.84453 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030044 B = 0.007114 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.734524 B = 3934.898837 C = 4386.745641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.095 4.095 3 C -0.018 4.018 4 C -0.283 4.283 5 C 0.160 3.840 6 F -0.155 7.155 7 C -0.327 4.327 8 C 0.249 3.751 9 N -0.701 5.701 10 C 0.271 3.729 11 H 0.045 0.955 12 C -0.534 4.534 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.901 3.099 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.131 4.131 21 C -0.151 4.151 22 H 0.107 0.893 23 H 0.103 0.897 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.138 0.862 28 H 0.390 0.610 29 H 0.265 0.735 30 H 0.100 0.900 31 H 0.033 0.967 32 H 0.026 0.974 33 H 0.050 0.950 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 10.175 -2.353 11.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.096 4.096 3 C -0.055 4.055 4 C -0.304 4.304 5 C 0.140 3.860 6 F -0.134 7.134 7 C -0.357 4.357 8 C 0.137 3.863 9 N -0.319 5.319 10 C 0.169 3.831 11 H 0.063 0.937 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.520 5.520 16 Si 0.729 3.271 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.170 4.170 21 C -0.208 4.208 22 H 0.125 0.875 23 H 0.121 0.879 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.133 0.867 27 H 0.156 0.844 28 H 0.224 0.776 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.662 9.770 -2.382 10.702 hybrid contribution -0.317 -0.730 0.642 1.023 sum -3.979 9.040 -1.739 10.029 Atomic orbital electron populations 1.24210 0.94398 1.02287 1.00420 1.21042 0.94356 0.93674 1.00572 1.19278 0.94056 0.93601 0.98597 1.22604 1.03934 0.96014 1.07868 1.17977 0.84629 0.94243 0.89186 1.91417 1.56610 1.97377 1.67964 1.21202 0.99131 0.98258 1.17088 1.18861 0.91584 0.85646 0.90231 1.45497 1.20762 1.08465 1.57141 1.18869 0.91909 0.78813 0.93519 0.93703 1.21229 1.22079 1.02338 1.11575 0.92058 1.24874 0.94674 0.97507 0.96550 1.69877 1.24693 1.20941 1.36480 0.86390 0.78556 0.80236 0.81930 1.19760 1.20819 1.20796 1.22013 0.99097 1.01905 0.93961 1.22212 1.00661 0.99999 0.97958 0.87516 0.87913 0.90004 0.90215 0.86742 0.84443 0.77624 0.92510 0.88205 0.94806 0.95473 0.93081 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 13.85 28.94 0.40 -1.84 16 2 C -0.10 -1.45 5.63 -102.23 -0.58 -2.02 16 3 C -0.02 -0.24 6.21 -28.75 -0.18 -0.42 16 4 C -0.28 -4.35 10.03 -36.05 -0.36 -4.72 16 5 C 0.16 2.90 7.26 -38.15 -0.28 2.62 16 6 F -0.15 -2.89 17.23 2.25 0.04 -2.85 16 7 C -0.33 -6.46 6.97 -37.13 -0.26 -6.72 16 8 C 0.25 4.65 5.51 -81.40 -0.45 4.20 16 9 N -0.70 -14.03 5.09 -51.55 -0.26 -14.29 16 10 C 0.27 6.43 2.20 -69.09 -0.15 6.28 16 11 H 0.05 1.19 6.54 -51.93 -0.34 0.85 16 12 C -0.53 -13.73 8.73 -34.44 -0.30 -14.03 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 14 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 15 N -0.88 -23.94 11.29 55.43 0.63 -23.32 16 16 Si 0.90 20.30 29.54 -169.99 -5.02 15.27 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 21 C -0.15 -3.14 8.24 37.16 0.31 -2.83 16 22 H 0.11 1.07 8.02 -52.49 -0.42 0.65 16 23 H 0.10 1.31 7.38 -52.48 -0.39 0.93 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 26 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.14 3.01 4.13 -52.49 -0.22 2.79 16 28 H 0.39 7.20 7.68 -40.82 -0.31 6.89 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 30 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 1.03 5.39 -51.93 -0.28 0.75 16 34 H 0.05 1.03 6.43 -51.93 -0.33 0.70 16 LS Contribution 277.91 15.07 4.19 4.19 Total: -1.00 -26.68 277.91 -6.76 -33.45 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -4.25 Total: 8.54 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -2.09 Total: -20.99 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.36 Total: -37.61 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.68 -6.76 -33.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158943.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.167 kcal (2) G-P(sol) polarization free energy of solvation -26.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds