Wall clock time and date at job start Thu Apr 9 2020 12:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33093 * 1 3 3 C 1.51548 * 121.41008 * 2 1 4 4 C 1.50709 * 108.69200 * 222.09415 * 3 2 1 5 5 C 1.33242 * 121.22900 * 332.04679 * 4 3 2 6 6 F 1.35098 * 119.10398 * 180.39164 * 5 4 3 7 7 C 1.46156 * 121.79106 * 0.35801 * 5 4 3 8 8 C 1.36187 * 119.65947 * 15.95438 * 7 5 4 9 9 N 1.39075 * 121.21233 * 179.33386 * 8 7 5 10 10 C 1.46498 * 120.00269 * 359.97438 * 9 8 7 11 11 H 1.09003 * 109.46950 * 325.00776 * 10 9 8 12 12 C 1.50698 * 109.47471 * 205.00348 * 10 9 8 13 13 H 1.07999 * 120.00251 * 354.19160 * 12 10 9 14 14 C 1.37875 * 119.99972 * 174.20106 * 12 10 9 15 15 N 1.31516 * 120.00448 * 159.37220 * 14 12 10 16 16 Si 1.86807 * 120.00048 * 339.36719 * 14 12 10 17 17 H 1.48500 * 109.46860 * 270.00551 * 16 14 12 18 18 H 1.48498 * 109.46960 * 29.99986 * 16 14 12 19 19 H 1.48495 * 109.47192 * 150.00333 * 16 14 12 20 20 C 1.53001 * 109.47009 * 85.00021 * 10 9 8 21 21 C 1.53007 * 109.47254 * 294.37572 * 20 10 9 22 22 H 1.07999 * 119.99973 * 180.18176 * 1 2 3 23 23 H 1.08002 * 119.99778 * 0.18652 * 1 2 3 24 24 H 1.09000 * 109.77981 * 102.24589 * 3 2 1 25 25 H 1.08997 * 109.47966 * 341.76637 * 3 2 1 26 26 H 1.08006 * 119.38539 * 152.01707 * 4 3 2 27 27 H 1.07996 * 120.17157 * 195.96948 * 7 5 4 28 28 H 0.97003 * 120.00266 * 179.97438 * 9 8 7 29 29 H 0.96993 * 119.99242 * 354.92651 * 15 14 12 30 30 H 1.09004 * 109.47176 * 54.37599 * 20 10 9 31 31 H 1.09000 * 109.47553 * 174.37182 * 20 10 9 32 32 H 1.08999 * 109.47085 * 59.99919 * 21 20 10 33 33 H 1.08996 * 109.47125 * 179.97438 * 21 20 10 34 34 H 1.08995 * 109.47119 * 299.99813 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.1207 1.2934 0.0000 4 6 3.2766 1.1535 -0.9570 5 6 3.8193 -0.0355 -1.2156 6 9 4.8593 -0.1103 -2.0746 7 6 3.3207 -1.2610 -0.5945 8 6 2.0974 -1.2637 0.0041 9 7 1.5856 -2.4150 0.5927 10 6 2.3653 -3.6552 0.5757 11 1 2.9247 -3.7198 -0.3575 12 6 1.4346 -4.8353 0.6863 13 1 0.3798 -4.6772 0.8559 14 6 1.9298 -6.1169 0.5712 15 7 1.2468 -7.1317 1.0543 16 14 3.5709 -6.4120 -0.2710 17 1 3.3495 -6.6333 -1.7227 18 1 4.4460 -5.2278 -0.0787 19 1 4.2217 -7.6094 0.3187 20 6 3.3393 -3.6614 1.7556 21 6 4.3718 -2.5475 1.5706 22 1 -0.5400 -0.9353 0.0030 23 1 -0.5400 0.9353 -0.0030 24 1 2.4986 1.4948 1.0023 25 1 1.4772 2.1123 -0.3215 26 1 3.6720 2.0335 -1.4426 27 1 3.9193 -2.1598 -0.6100 28 1 0.7123 -2.3970 1.0146 29 1 0.4319 -6.9729 1.5557 30 1 2.7890 -3.4965 2.6820 31 1 3.8480 -4.6243 1.8018 32 1 3.8631 -1.5846 1.5245 33 1 5.0654 -2.5517 2.4114 34 1 4.9221 -2.7124 0.6443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:07 Heat of formation + Delta-G solvation = -5.887557 kcal Electronic energy + Delta-G solvation = -17022.011204 eV Core-core repulsion = 14255.811727 eV Total energy + Delta-G solvation = -2766.199477 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -48.35920 -38.78230 -36.00691 -32.84370 -32.28550 -31.17603 -29.34018 -26.71300 -25.61629 -22.53206 -22.25083 -20.41011 -19.55455 -18.11631 -17.13621 -15.97299 -15.59334 -15.13602 -14.95166 -14.73937 -14.05552 -13.59037 -13.46203 -13.03581 -12.89998 -12.46453 -12.34215 -12.00565 -11.67184 -11.63169 -11.04590 -10.85506 -10.59494 -10.57766 -10.37077 -9.77955 -9.73596 -9.19671 -9.14986 -8.54454 -8.39289 -6.71275 -6.47778 -4.29644 1.33172 2.44220 3.33341 3.37545 3.50450 3.53066 4.04348 4.36170 4.72347 4.78893 5.04896 5.19114 5.46511 5.50698 5.76560 5.81886 5.90394 5.92893 5.97853 6.15003 6.31439 6.36614 6.46834 6.59799 6.68161 6.77068 6.79764 6.86496 6.98532 7.24885 7.30936 7.61273 7.98319 8.20051 8.45135 8.71830 9.37780 10.71990 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.008246 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.595383 B = 3394.832382 C = 3925.432943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.018 4.018 4 C -0.279 4.279 5 C 0.158 3.842 6 F -0.155 7.155 7 C -0.330 4.330 8 C 0.250 3.750 9 N -0.694 5.694 10 C 0.250 3.750 11 H 0.038 0.962 12 C -0.623 4.623 13 H 0.061 0.939 14 C 0.045 3.955 15 N -0.891 5.891 16 Si 1.034 2.966 17 H -0.282 1.282 18 H -0.270 1.270 19 H -0.283 1.283 20 C -0.132 4.132 21 C -0.158 4.158 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.394 0.606 29 H 0.271 0.729 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.034 0.966 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 14.000 -0.853 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 C -0.055 4.055 4 C -0.300 4.300 5 C 0.138 3.862 6 F -0.133 7.133 7 C -0.360 4.360 8 C 0.138 3.862 9 N -0.312 5.312 10 C 0.146 3.854 11 H 0.056 0.944 12 C -0.661 4.661 13 H 0.079 0.921 14 C -0.163 4.163 15 N -0.523 5.523 16 Si 0.861 3.139 17 H -0.208 1.208 18 H -0.195 1.195 19 H -0.208 1.208 20 C -0.171 4.171 21 C -0.215 4.215 22 H 0.122 0.878 23 H 0.126 0.874 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.134 0.866 27 H 0.153 0.847 28 H 0.228 0.772 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.982 12.548 -1.334 12.966 hybrid contribution -1.234 1.061 0.477 1.696 sum 1.749 13.608 -0.856 13.747 Atomic orbital electron populations 1.24262 0.94395 1.02479 0.99609 1.21068 0.94346 0.93501 1.01163 1.19330 0.94030 0.93594 0.98534 1.22632 1.03754 0.96032 1.07577 1.17930 0.84869 0.94190 0.89231 1.91420 1.56560 1.97357 1.68001 1.21192 0.99662 0.98284 1.16851 1.18909 0.91432 0.85789 0.90095 1.45249 1.20783 1.07856 1.57347 1.19183 0.90901 0.81297 0.94023 0.94393 1.22011 0.95265 0.91141 1.57670 0.92056 1.25653 1.03934 0.91813 0.94900 1.70823 1.17098 1.33440 1.30955 0.84174 0.76055 0.76490 0.77182 1.20843 1.19522 1.20820 1.22282 0.96751 0.97604 1.00438 1.22277 0.98968 1.00321 0.99981 0.87773 0.87362 0.89980 0.90109 0.86612 0.84698 0.77160 0.91877 0.92912 0.92123 0.91966 0.94706 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 13.86 28.94 0.40 -1.73 16 2 C -0.10 -1.45 5.63 -102.09 -0.57 -2.03 16 3 C -0.02 -0.22 6.23 -28.61 -0.18 -0.40 16 4 C -0.28 -4.05 10.03 -36.05 -0.36 -4.41 16 5 C 0.16 2.71 7.26 -38.15 -0.28 2.43 16 6 F -0.15 -2.73 17.23 2.25 0.04 -2.70 16 7 C -0.33 -6.15 7.01 -37.14 -0.26 -6.41 16 8 C 0.25 4.46 5.53 -81.41 -0.45 4.01 16 9 N -0.69 -13.54 5.09 -51.55 -0.26 -13.80 16 10 C 0.25 5.63 1.75 -69.08 -0.12 5.51 16 11 H 0.04 0.91 4.98 -51.93 -0.26 0.65 16 12 C -0.62 -16.41 8.97 -34.44 -0.31 -16.72 16 13 H 0.06 1.72 7.96 -52.49 -0.42 1.30 16 14 C 0.04 1.22 5.25 -17.82 -0.09 1.13 16 15 N -0.89 -26.07 13.70 55.43 0.76 -25.31 16 16 Si 1.03 24.22 26.33 -169.99 -4.48 19.75 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -5.85 5.88 56.52 0.33 -5.52 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.13 -2.79 5.03 -26.73 -0.13 -2.92 16 21 C -0.16 -2.93 8.24 37.16 0.31 -2.63 16 22 H 0.10 1.36 7.38 -52.49 -0.39 0.97 16 23 H 0.11 1.05 8.03 -52.49 -0.42 0.63 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.08 0.81 8.02 -51.93 -0.42 0.40 16 26 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 27 H 0.14 2.72 4.04 -52.49 -0.21 2.51 16 28 H 0.39 7.27 7.68 -40.82 -0.31 6.96 16 29 H 0.27 7.86 8.73 -40.82 -0.36 7.51 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.34 5.64 -51.93 -0.29 1.04 16 32 H 0.06 1.13 5.36 -51.93 -0.28 0.85 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.94 6.45 -51.93 -0.34 0.60 16 LS Contribution 273.99 15.07 4.13 4.13 Total: -1.00 -27.94 273.99 -6.11 -34.05 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.25 Total: 8.04 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -2.05 Total: -24.16 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.50 Total: -39.11 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -4.48 Total: 19.75 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.94 -6.11 -34.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.165 kcal (2) G-P(sol) polarization free energy of solvation -27.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds