Wall clock time and date at job start Thu Apr 9 2020 12:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33093 * 1 3 3 C 1.51548 * 121.41008 * 2 1 4 4 C 1.50709 * 108.69200 * 222.09415 * 3 2 1 5 5 C 1.33242 * 121.22900 * 332.04679 * 4 3 2 6 6 F 1.35098 * 119.10398 * 180.39164 * 5 4 3 7 7 C 1.46156 * 121.79106 * 0.35801 * 5 4 3 8 8 C 1.36187 * 119.65947 * 15.95438 * 7 5 4 9 9 N 1.39075 * 121.21233 * 179.33386 * 8 7 5 10 10 C 1.46498 * 120.00269 * 359.97438 * 9 8 7 11 11 H 1.09003 * 109.46950 * 325.00776 * 10 9 8 12 12 C 1.50698 * 109.47471 * 205.00348 * 10 9 8 13 13 H 1.07999 * 120.00251 * 354.19160 * 12 10 9 14 14 C 1.37875 * 119.99972 * 174.20106 * 12 10 9 15 15 N 1.31516 * 120.00448 * 159.37220 * 14 12 10 16 16 Si 1.86807 * 120.00048 * 339.36719 * 14 12 10 17 17 H 1.48500 * 109.46860 * 270.00551 * 16 14 12 18 18 H 1.48498 * 109.46960 * 29.99986 * 16 14 12 19 19 H 1.48495 * 109.47192 * 150.00333 * 16 14 12 20 20 C 1.53001 * 109.47009 * 85.00021 * 10 9 8 21 21 C 1.53007 * 109.47254 * 294.37572 * 20 10 9 22 22 H 1.07999 * 119.99973 * 180.18176 * 1 2 3 23 23 H 1.08002 * 119.99778 * 0.18652 * 1 2 3 24 24 H 1.09000 * 109.77981 * 102.24589 * 3 2 1 25 25 H 1.08997 * 109.47966 * 341.76637 * 3 2 1 26 26 H 1.08006 * 119.38539 * 152.01707 * 4 3 2 27 27 H 1.07996 * 120.17157 * 195.96948 * 7 5 4 28 28 H 0.97003 * 120.00266 * 179.97438 * 9 8 7 29 29 H 0.96993 * 119.99242 * 354.92651 * 15 14 12 30 30 H 1.09004 * 109.47176 * 54.37599 * 20 10 9 31 31 H 1.09000 * 109.47553 * 174.37182 * 20 10 9 32 32 H 1.08999 * 109.47085 * 59.99919 * 21 20 10 33 33 H 1.08996 * 109.47125 * 179.97438 * 21 20 10 34 34 H 1.08995 * 109.47119 * 299.99813 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3309 0.0000 0.0000 3 6 2.1207 1.2934 0.0000 4 6 3.2766 1.1535 -0.9570 5 6 3.8193 -0.0355 -1.2156 6 9 4.8593 -0.1103 -2.0746 7 6 3.3207 -1.2610 -0.5945 8 6 2.0974 -1.2637 0.0041 9 7 1.5856 -2.4150 0.5927 10 6 2.3653 -3.6552 0.5757 11 1 2.9247 -3.7198 -0.3575 12 6 1.4346 -4.8353 0.6863 13 1 0.3798 -4.6772 0.8559 14 6 1.9298 -6.1169 0.5712 15 7 1.2468 -7.1317 1.0543 16 14 3.5709 -6.4120 -0.2710 17 1 3.3495 -6.6333 -1.7227 18 1 4.4460 -5.2278 -0.0787 19 1 4.2217 -7.6094 0.3187 20 6 3.3393 -3.6614 1.7556 21 6 4.3718 -2.5475 1.5706 22 1 -0.5400 -0.9353 0.0030 23 1 -0.5400 0.9353 -0.0030 24 1 2.4986 1.4948 1.0023 25 1 1.4772 2.1123 -0.3215 26 1 3.6720 2.0335 -1.4426 27 1 3.9193 -2.1598 -0.6100 28 1 0.7123 -2.3970 1.0146 29 1 0.4319 -6.9729 1.5557 30 1 2.7890 -3.4965 2.6820 31 1 3.8480 -4.6243 1.8018 32 1 3.8631 -1.5846 1.5245 33 1 5.0654 -2.5517 2.4114 34 1 4.9221 -2.7124 0.6443 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158944.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:05 Heat of formation + Delta-G solvation = -22.424382 kcal Electronic energy + Delta-G solvation = -17022.728295 eV Core-core repulsion = 14255.811727 eV Total energy + Delta-G solvation = -2766.916568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.63039 -40.13520 -37.47700 -34.72937 -33.66370 -32.58091 -30.79818 -28.35224 -26.78919 -24.32820 -23.65541 -21.72193 -21.09326 -19.89845 -18.67104 -17.41729 -16.76654 -16.43677 -16.41057 -16.15429 -15.56999 -15.23808 -14.79127 -14.51723 -14.33079 -14.07120 -13.74635 -13.63523 -12.91894 -12.72592 -12.70897 -12.50844 -12.28630 -12.20462 -11.69994 -11.56158 -11.28790 -11.12227 -10.50511 -10.32870 -9.86411 -8.86303 -7.88244 -6.47212 0.17272 1.31321 1.44540 1.45602 1.65188 2.24069 2.40013 2.60044 2.94008 3.54936 3.72485 4.05462 4.25389 4.29955 4.38858 4.49482 4.57719 4.73071 4.76453 4.87895 4.89801 5.05376 5.13781 5.15167 5.23177 5.31679 5.45384 5.52867 5.59293 5.67322 5.70269 5.94302 6.03270 6.33276 6.66451 6.98297 7.27277 8.52955 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.008246 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.595383 B = 3394.832382 C = 3925.432943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.017 4.017 4 C -0.240 4.240 5 C 0.114 3.886 6 F -0.165 7.165 7 C -0.339 4.339 8 C 0.240 3.760 9 N -0.704 5.704 10 C 0.257 3.743 11 H 0.028 0.972 12 C -0.621 4.621 13 H 0.033 0.967 14 C -0.001 4.001 15 N -0.924 5.924 16 Si 1.069 2.931 17 H -0.275 1.275 18 H -0.246 1.246 19 H -0.280 1.280 20 C -0.129 4.129 21 C -0.147 4.147 22 H 0.092 0.908 23 H 0.146 0.854 24 H 0.096 0.904 25 H 0.118 0.882 26 H 0.139 0.861 27 H 0.112 0.888 28 H 0.396 0.604 29 H 0.259 0.741 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 17.090 -1.103 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.126 4.126 3 C -0.054 4.054 4 C -0.260 4.260 5 C 0.094 3.906 6 F -0.144 7.144 7 C -0.369 4.369 8 C 0.130 3.870 9 N -0.324 5.324 10 C 0.152 3.848 11 H 0.046 0.954 12 C -0.658 4.658 13 H 0.051 0.949 14 C -0.202 4.202 15 N -0.558 5.558 16 Si 0.890 3.110 17 H -0.201 1.201 18 H -0.170 1.170 19 H -0.206 1.206 20 C -0.168 4.168 21 C -0.204 4.204 22 H 0.110 0.890 23 H 0.164 0.836 24 H 0.114 0.886 25 H 0.136 0.864 26 H 0.157 0.843 27 H 0.130 0.870 28 H 0.231 0.769 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.398 15.687 -1.593 16.129 hybrid contribution -1.484 0.227 0.546 1.597 sum 1.914 15.913 -1.047 16.062 Atomic orbital electron populations 1.24543 0.93777 1.03748 0.96224 1.21155 0.94998 0.92628 1.03831 1.19534 0.93572 0.93479 0.98799 1.23151 1.02133 0.95518 1.05210 1.18033 0.86494 0.94694 0.91374 1.91389 1.57089 1.97421 1.68517 1.21181 0.99931 0.98378 1.17388 1.19225 0.91703 0.86409 0.89673 1.44953 1.20864 1.07706 1.58908 1.18851 0.90384 0.81454 0.94090 0.95442 1.22228 0.94656 0.92839 1.56111 0.94860 1.26833 1.06405 0.92006 0.94987 1.70930 1.17535 1.34331 1.33052 0.83743 0.73272 0.77370 0.76610 1.20087 1.17021 1.20607 1.22169 0.97050 0.98149 0.99434 1.22148 0.98406 0.99178 1.00641 0.88963 0.83596 0.88631 0.86377 0.84346 0.87034 0.76915 0.93205 0.93358 0.93280 0.91641 0.92663 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 13.86 66.67 0.92 -2.21 16 2 C -0.13 -3.25 5.63 -18.22 -0.10 -3.36 16 3 C -0.02 -0.35 6.23 29.38 0.18 -0.17 16 4 C -0.24 -6.02 10.03 24.56 0.25 -5.78 16 5 C 0.11 3.71 7.26 23.20 0.17 3.88 16 6 F -0.17 -5.69 17.23 44.97 0.78 -4.91 16 7 C -0.34 -12.41 7.01 23.85 0.17 -12.24 16 8 C 0.24 8.29 5.53 40.05 0.22 8.51 16 9 N -0.70 -27.48 5.09 -317.02 -1.61 -29.09 16 10 C 0.26 11.73 1.75 44.25 0.08 11.80 16 11 H 0.03 1.33 4.98 -2.39 -0.01 1.32 16 12 C -0.62 -33.64 8.97 25.60 0.23 -33.41 16 13 H 0.03 1.94 7.96 -2.91 -0.02 1.92 16 14 C 0.00 -0.06 5.25 84.65 0.44 0.39 16 15 N -0.92 -55.85 13.70 21.45 0.29 -55.56 16 16 Si 1.07 49.37 26.33 68.60 1.81 51.18 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.25 -10.34 5.88 99.48 0.59 -9.76 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 C -0.13 -5.43 5.03 30.60 0.15 -5.28 16 21 C -0.15 -5.26 8.24 71.98 0.59 -4.67 16 22 H 0.09 2.22 7.38 -2.91 -0.02 2.19 16 23 H 0.15 2.03 8.03 -2.91 -0.02 2.01 16 24 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 25 H 0.12 1.60 8.02 -2.39 -0.02 1.58 16 26 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.11 4.53 4.04 -2.91 -0.01 4.52 16 28 H 0.40 14.76 7.68 -92.71 -0.71 14.05 16 29 H 0.26 15.72 8.73 -92.71 -0.81 14.91 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.15 5.64 -2.39 -0.01 2.14 16 32 H 0.06 2.30 5.36 -2.39 -0.01 2.29 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.71 6.45 -2.39 -0.02 1.70 16 Total: -1.00 -62.26 273.99 4.81 -57.45 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.24 Total: 23.47 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 3.31 Total: -42.53 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -1.32 Total: -84.65 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.78 Total: -4.91 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.81 Total: 51.18 kcal Total: -62.26 4.81 -57.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158944.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.024 kcal (2) G-P(sol) polarization free energy of solvation -62.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds