Wall clock time and date at job start Thu Apr 9 2020 12:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47010 * 2 1 4 4 H 1.08997 * 109.47703 * 175.44914 * 3 2 1 5 5 C 1.50710 * 109.47015 * 55.44942 * 3 2 1 6 6 H 1.07994 * 119.99742 * 240.00139 * 5 3 2 7 7 C 1.37874 * 119.99637 * 60.27812 * 5 3 2 8 8 N 1.31517 * 120.00388 * 359.72137 * 7 5 3 9 9 Si 1.86802 * 120.00076 * 179.72762 * 7 5 3 10 10 H 1.48500 * 109.47150 * 59.99216 * 9 7 5 11 11 H 1.48498 * 109.47282 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46457 * 299.99851 * 9 7 5 13 13 N 1.46894 * 109.47442 * 295.45318 * 3 2 1 14 14 C 1.46901 * 111.00264 * 273.54258 * 13 3 2 15 15 H 1.09005 * 108.09740 * 32.12519 * 14 13 3 16 16 C 1.51768 * 108.21535 * 149.10506 * 14 13 3 17 17 N 1.30148 * 117.42512 * 121.65013 * 16 14 13 18 18 C 1.33402 * 122.61478 * 359.97438 * 17 16 14 19 19 C 1.50700 * 117.27845 * 179.97438 * 18 17 16 20 20 N 1.30448 * 125.44420 * 0.02562 * 18 17 16 21 21 C 1.34336 * 121.80603 * 0.02562 * 20 18 17 22 22 O 1.21416 * 121.55451 * 180.02562 * 21 20 18 23 23 H 1.08994 * 109.47274 * 305.23178 * 1 2 3 24 24 H 1.09001 * 109.46846 * 65.23410 * 1 2 3 25 25 H 1.09003 * 109.46724 * 185.23045 * 1 2 3 26 26 H 1.08994 * 109.47621 * 240.00422 * 2 1 3 27 27 H 1.09001 * 109.47300 * 119.99708 * 2 1 3 28 28 H 0.96996 * 120.00115 * 180.02562 * 8 7 5 29 29 H 1.00905 * 111.00357 * 37.49112 * 13 3 2 30 30 H 1.07996 * 121.29172 * 301.66939 * 16 14 13 31 31 H 1.08994 * 109.47014 * 90.00529 * 19 18 17 32 32 H 1.08997 * 109.46941 * 210.00300 * 19 18 17 33 33 H 1.09000 * 109.46748 * 330.00155 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1269 1.4437 0.0815 5 6 1.4477 2.1848 1.1703 6 1 0.8368 3.0592 1.0018 7 6 1.6904 1.7506 2.4562 8 7 2.4344 0.6856 2.6613 9 14 0.9626 2.6749 3.9072 10 1 -0.5187 2.6743 3.8018 11 1 1.3698 2.0112 5.1716 12 1 1.4586 4.0747 3.9014 13 7 1.6421 2.1026 -1.2505 14 6 2.6266 1.8560 -2.3125 15 1 3.0579 0.8679 -2.1516 16 6 1.8964 1.8439 -3.6429 17 7 2.2781 2.7019 -4.5440 18 6 3.2687 3.5708 -4.3356 19 6 3.6118 4.5103 -5.4628 20 7 3.9657 3.6743 -3.2379 21 6 3.7380 2.8819 -2.1772 22 8 4.3893 2.9825 -1.1575 23 1 -0.3633 0.5928 0.8394 24 1 -0.3633 0.4305 -0.9332 25 1 -0.3633 -1.0234 0.0937 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.6048 0.3800 3.5660 29 1 0.7202 1.8090 -1.5370 30 1 1.0910 1.1504 -3.8344 31 1 3.0188 5.4202 -5.3707 32 1 4.6715 4.7612 -5.4168 33 1 3.3934 4.0291 -6.4161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:11 Heat of formation + Delta-G solvation = 24.470444 kcal Electronic energy + Delta-G solvation = -17032.431775 eV Core-core repulsion = 14287.468681 eV Total energy + Delta-G solvation = -2744.963094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66537 -37.62829 -36.58155 -33.72592 -32.49105 -31.18415 -30.09237 -27.27190 -25.36433 -23.67479 -23.40226 -22.21915 -19.59108 -17.79838 -16.67632 -16.47957 -15.89531 -15.31723 -14.73267 -14.39447 -14.06014 -13.54722 -13.32487 -13.21688 -12.84302 -12.55053 -12.48266 -12.05706 -11.90312 -11.49536 -10.92611 -10.79855 -10.64408 -10.20462 -10.16844 -9.86988 -9.70562 -9.58702 -9.14394 -8.75297 -8.36215 -7.58354 -6.00626 -4.02216 -0.00977 2.25501 3.33790 3.38419 3.41542 3.52549 3.75755 3.89025 4.06379 4.42369 4.71612 5.04305 5.18097 5.28926 5.34073 5.45837 5.55562 5.69601 6.06173 6.15750 6.23016 6.41531 6.67882 6.93505 7.04046 7.08378 7.37878 7.51754 7.76879 7.93141 8.10538 8.21529 8.29515 8.43215 9.00038 9.60294 11.06987 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.007073 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.896149 B = 3957.508649 C = 4329.003753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C 0.209 3.791 4 H 0.053 0.947 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.647 5.647 14 C -0.043 4.043 15 H 0.106 0.894 16 C 0.267 3.733 17 N -0.561 5.561 18 C 0.416 3.584 19 C -0.100 4.100 20 N -0.600 5.600 21 C 0.513 3.487 22 O -0.412 6.412 23 H 0.071 0.929 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.010 0.990 27 H 0.098 0.902 28 H 0.261 0.739 29 H 0.335 0.665 30 H 0.188 0.812 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 0.116 -14.655 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.187 4.187 3 C 0.102 3.898 4 H 0.070 0.930 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.283 5.283 14 C -0.160 4.160 15 H 0.123 0.877 16 C 0.063 3.937 17 N -0.275 5.275 18 C 0.145 3.855 19 C -0.158 4.158 20 N -0.331 5.331 21 C 0.295 3.705 22 O -0.280 6.280 23 H 0.090 0.910 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.029 0.971 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.205 0.795 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.230 1.446 -14.135 14.262 hybrid contribution -0.891 -1.255 1.392 2.075 sum -2.121 0.192 -12.743 12.920 Atomic orbital electron populations 1.21618 0.97419 0.99055 1.00815 1.22165 0.95167 1.00794 1.00619 1.19576 0.97517 0.88506 0.84228 0.92958 1.20857 1.30906 1.11682 0.89353 0.92116 1.24874 0.95374 0.95175 0.98704 1.69852 1.38347 1.23837 1.21268 0.86575 0.79279 0.80104 0.81545 1.20327 1.21390 1.20297 1.61339 1.02280 1.62952 1.01716 1.22966 0.98056 1.01647 0.93289 0.87739 1.27851 0.90710 0.87977 0.87127 1.67872 1.16863 1.07184 1.35615 1.23471 0.82562 0.87672 0.91802 1.20865 1.03629 0.97278 0.94051 1.69053 1.30877 1.30913 1.02297 1.21142 0.82958 0.80773 0.85619 1.90717 1.45664 1.64102 1.27498 0.90972 0.95495 0.95412 0.97125 0.88336 0.92921 0.84503 0.79506 0.88800 0.89197 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.40 37.16 0.35 -2.19 16 2 C -0.15 -3.24 5.50 -26.73 -0.15 -3.38 16 3 C 0.21 5.06 1.95 -68.86 -0.13 4.92 16 4 H 0.05 1.48 6.50 -51.93 -0.34 1.15 16 5 C -0.49 -13.29 7.27 -34.44 -0.25 -13.55 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 8 N -0.89 -25.39 11.38 55.43 0.63 -24.76 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.65 -12.96 6.00 -102.22 -0.61 -13.57 16 14 C -0.04 -0.74 2.84 -68.92 -0.20 -0.93 16 15 H 0.11 1.79 7.08 -51.93 -0.37 1.43 16 16 C 0.27 3.26 10.99 -12.46 -0.14 3.12 16 17 N -0.56 -7.20 10.14 -7.39 -0.07 -7.28 16 18 C 0.42 5.90 7.61 -156.93 -1.19 4.71 16 19 C -0.10 -0.95 10.21 36.01 0.37 -0.58 16 20 N -0.60 -11.03 10.22 -9.61 -0.10 -11.13 16 21 C 0.51 10.81 7.71 -10.61 -0.08 10.73 16 22 O -0.41 -10.57 16.50 5.44 0.09 -10.48 16 23 H 0.07 1.58 6.89 -51.93 -0.36 1.22 16 24 H 0.03 0.43 6.61 -51.93 -0.34 0.09 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.01 0.20 7.49 -51.93 -0.39 -0.19 16 27 H 0.10 2.49 6.22 -51.93 -0.32 2.17 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.33 5.79 6.07 -39.29 -0.24 5.55 16 30 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 277.49 15.07 4.18 4.18 Total: -1.00 -33.05 277.49 -6.44 -39.49 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.01 Total: 2.49 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.52 Total: 4.40 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.16 Total: -56.74 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.05 -6.44 -39.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.960 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds