Wall clock time and date at job start Thu Apr 9 2020 12:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47010 * 2 1 4 4 H 1.08997 * 109.47703 * 175.44914 * 3 2 1 5 5 C 1.50710 * 109.47015 * 55.44942 * 3 2 1 6 6 H 1.07994 * 119.99742 * 240.00139 * 5 3 2 7 7 C 1.37874 * 119.99637 * 60.27812 * 5 3 2 8 8 N 1.31517 * 120.00388 * 359.72137 * 7 5 3 9 9 Si 1.86802 * 120.00076 * 179.72762 * 7 5 3 10 10 H 1.48500 * 109.47150 * 59.99216 * 9 7 5 11 11 H 1.48498 * 109.47282 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46457 * 299.99851 * 9 7 5 13 13 N 1.46894 * 109.47442 * 295.45318 * 3 2 1 14 14 C 1.46901 * 111.00264 * 273.54258 * 13 3 2 15 15 H 1.09005 * 108.09740 * 32.12519 * 14 13 3 16 16 C 1.51768 * 108.21535 * 149.10506 * 14 13 3 17 17 N 1.30148 * 117.42512 * 121.65013 * 16 14 13 18 18 C 1.33402 * 122.61478 * 359.97438 * 17 16 14 19 19 C 1.50700 * 117.27845 * 179.97438 * 18 17 16 20 20 N 1.30448 * 125.44420 * 0.02562 * 18 17 16 21 21 C 1.34336 * 121.80603 * 0.02562 * 20 18 17 22 22 O 1.21416 * 121.55451 * 180.02562 * 21 20 18 23 23 H 1.08994 * 109.47274 * 305.23178 * 1 2 3 24 24 H 1.09001 * 109.46846 * 65.23410 * 1 2 3 25 25 H 1.09003 * 109.46724 * 185.23045 * 1 2 3 26 26 H 1.08994 * 109.47621 * 240.00422 * 2 1 3 27 27 H 1.09001 * 109.47300 * 119.99708 * 2 1 3 28 28 H 0.96996 * 120.00115 * 180.02562 * 8 7 5 29 29 H 1.00905 * 111.00357 * 37.49112 * 13 3 2 30 30 H 1.07996 * 121.29172 * 301.66939 * 16 14 13 31 31 H 1.08994 * 109.47014 * 90.00529 * 19 18 17 32 32 H 1.08997 * 109.46941 * 210.00300 * 19 18 17 33 33 H 1.09000 * 109.46748 * 330.00155 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1269 1.4437 0.0815 5 6 1.4477 2.1848 1.1703 6 1 0.8368 3.0592 1.0018 7 6 1.6904 1.7506 2.4562 8 7 2.4344 0.6856 2.6613 9 14 0.9626 2.6749 3.9072 10 1 -0.5187 2.6743 3.8018 11 1 1.3698 2.0112 5.1716 12 1 1.4586 4.0747 3.9014 13 7 1.6421 2.1026 -1.2505 14 6 2.6266 1.8560 -2.3125 15 1 3.0579 0.8679 -2.1516 16 6 1.8964 1.8439 -3.6429 17 7 2.2781 2.7019 -4.5440 18 6 3.2687 3.5708 -4.3356 19 6 3.6118 4.5103 -5.4628 20 7 3.9657 3.6743 -3.2379 21 6 3.7380 2.8819 -2.1772 22 8 4.3893 2.9825 -1.1575 23 1 -0.3633 0.5928 0.8394 24 1 -0.3633 0.4305 -0.9332 25 1 -0.3633 -1.0234 0.0937 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.6048 0.3800 3.5660 29 1 0.7202 1.8090 -1.5370 30 1 1.0910 1.1504 -3.8344 31 1 3.0188 5.4202 -5.3707 32 1 4.6715 4.7612 -5.4168 33 1 3.3934 4.0291 -6.4161 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164843.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:10 Heat of formation + Delta-G solvation = -2.525224 kcal Electronic energy + Delta-G solvation = -17033.602395 eV Core-core repulsion = 14287.468681 eV Total energy + Delta-G solvation = -2746.133714 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.99156 -39.09868 -38.28727 -35.18059 -34.12459 -32.82101 -31.33941 -28.87560 -27.02560 -25.25608 -24.82329 -23.51882 -21.37729 -19.19383 -18.26628 -17.95990 -17.40575 -17.01619 -16.58659 -15.71791 -15.44751 -15.11259 -14.69115 -14.57626 -14.35977 -14.27810 -13.80260 -13.25991 -13.08743 -12.86672 -12.78832 -12.61021 -12.46371 -11.98081 -11.87073 -11.53573 -11.37517 -10.98447 -10.89173 -10.44944 -10.19805 -9.18598 -8.10015 -6.17792 -1.18794 1.00297 1.38434 1.41813 1.47968 2.17109 2.42784 2.52883 2.77991 2.90562 3.20115 3.50345 3.56775 3.94741 4.18882 4.53167 4.61209 4.69010 4.73722 4.74105 4.87195 5.07679 5.22409 5.26169 5.39392 5.66426 5.72087 5.76241 5.78747 6.22944 6.45613 6.47741 6.63080 6.90127 7.04838 7.48190 8.95736 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034059 B = 0.007073 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.896149 B = 3957.508649 C = 4329.003753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.140 4.140 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.501 4.501 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.654 5.654 14 C -0.044 4.044 15 H 0.106 0.894 16 C 0.299 3.701 17 N -0.556 5.556 18 C 0.429 3.571 19 C -0.099 4.099 20 N -0.648 5.648 21 C 0.504 3.496 22 O -0.489 6.489 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.259 0.741 29 H 0.353 0.647 30 H 0.250 0.750 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -0.178 -17.459 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.180 4.180 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.540 4.540 6 H 0.068 0.932 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.187 1.187 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.291 5.291 14 C -0.161 4.161 15 H 0.123 0.877 16 C 0.097 3.903 17 N -0.270 5.270 18 C 0.163 3.837 19 C -0.157 4.157 20 N -0.384 5.384 21 C 0.289 3.711 22 O -0.362 6.362 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.176 0.824 30 H 0.266 0.734 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.685 1.145 -17.014 17.446 hybrid contribution -0.148 -1.132 2.078 2.371 sum -3.832 0.012 -14.936 15.420 Atomic orbital electron populations 1.21506 0.94984 1.00099 1.01445 1.21970 0.97211 0.98673 1.00127 1.19171 0.94255 0.90056 0.85450 0.98116 1.21146 1.30520 1.11424 0.90889 0.93229 1.25577 0.95884 0.95953 1.01109 1.69998 1.39457 1.25033 1.21428 0.85722 0.79393 0.78300 0.78861 1.18668 1.21029 1.21154 1.60912 1.03689 1.63100 1.01426 1.22949 0.97122 1.00507 0.95538 0.87659 1.28567 0.90147 0.87867 0.83712 1.68115 1.16482 1.07333 1.35047 1.24463 0.80916 0.87056 0.91280 1.21100 1.04185 0.97100 0.93328 1.69080 1.33773 1.32308 1.03243 1.21816 0.82796 0.81082 0.85367 1.90669 1.48507 1.66803 1.30257 0.94061 0.91793 0.93415 0.94249 0.92219 0.93189 0.82394 0.73427 0.86940 0.88881 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 9.40 71.98 0.68 -3.78 16 2 C -0.14 -6.06 5.50 30.60 0.17 -5.89 16 3 C 0.22 10.83 1.95 44.17 0.09 10.91 16 4 H 0.00 0.05 6.50 -2.39 -0.02 0.04 16 5 C -0.50 -27.91 7.27 25.60 0.19 -27.72 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.74 5.31 84.65 0.45 1.19 16 8 N -0.92 -54.08 11.38 21.45 0.24 -53.84 16 9 Si 0.95 45.30 29.54 68.60 2.03 47.32 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 N -0.65 -25.59 6.00 -477.33 -2.87 -28.46 16 14 C -0.04 -1.47 2.84 44.13 0.13 -1.34 16 15 H 0.11 3.54 7.08 -2.38 -0.02 3.52 16 16 C 0.30 5.94 10.99 88.70 0.97 6.91 16 17 N -0.56 -11.94 10.14 -177.29 -1.80 -13.74 16 18 C 0.43 11.16 7.61 138.66 1.06 12.22 16 19 C -0.10 -1.56 10.21 71.24 0.73 -0.83 16 20 N -0.65 -23.92 10.22 -302.89 -3.10 -27.02 16 21 C 0.50 21.95 7.71 88.10 0.68 22.62 16 22 O -0.49 -27.02 16.50 -3.45 -0.06 -27.08 16 23 H 0.04 1.75 6.89 -2.39 -0.02 1.73 16 24 H 0.06 1.81 6.61 -2.39 -0.02 1.79 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.44 7.49 -2.39 -0.02 1.42 16 27 H 0.06 3.08 6.22 -2.39 -0.01 3.06 16 28 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.35 11.10 6.07 -89.69 -0.54 10.55 16 30 H 0.25 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -79.18 277.49 0.17 -79.01 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.58 Total: 9.50 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 5.13 Total: 14.29 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -7.52 Total: -123.05 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.06 Total: -27.08 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -79.18 0.17 -79.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164843.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.489 kcal (2) G-P(sol) polarization free energy of solvation -79.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds