Wall clock time and date at job start Thu Apr 9 2020 12:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 H 1.08999 * 109.47073 * 54.64081 * 3 2 1 5 5 C 1.50697 * 109.47268 * 174.64326 * 3 2 1 6 6 H 1.07994 * 119.99943 * 119.99972 * 5 3 2 7 7 C 1.37872 * 119.99866 * 300.00198 * 5 3 2 8 8 N 1.31516 * 119.99891 * 179.72880 * 7 5 3 9 9 Si 1.86800 * 120.00057 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47222 * 90.00055 * 9 7 5 11 11 H 1.48507 * 109.47227 * 210.00333 * 9 7 5 12 12 H 1.48500 * 109.47074 * 330.00032 * 9 7 5 13 13 N 1.46901 * 109.47167 * 294.64379 * 3 2 1 14 14 C 1.46902 * 111.00150 * 153.56506 * 13 3 2 15 15 H 1.08999 * 108.09667 * 34.78597 * 14 13 3 16 16 C 1.51771 * 108.21546 * 277.98523 * 14 13 3 17 17 N 1.30148 * 117.43084 * 238.37465 * 16 14 13 18 18 C 1.33397 * 122.60851 * 359.95588 * 17 16 14 19 19 C 1.50704 * 117.27448 * 180.02562 * 18 17 16 20 20 N 1.30445 * 125.45232 * 0.04372 * 18 17 16 21 21 C 1.34341 * 121.79978 * 359.97438 * 20 18 17 22 22 O 1.21427 * 121.55239 * 180.02562 * 21 20 18 23 23 H 1.09004 * 109.46789 * 180.52819 * 1 2 3 24 24 H 1.08996 * 109.47118 * 300.52329 * 1 2 3 25 25 H 1.08997 * 109.47400 * 60.52883 * 1 2 3 26 26 H 1.09005 * 109.46836 * 240.00503 * 2 1 3 27 27 H 1.08997 * 109.47208 * 120.00380 * 2 1 3 28 28 H 0.97004 * 119.99899 * 179.97438 * 8 7 5 29 29 H 1.00903 * 110.99890 * 29.61367 * 13 3 2 30 30 H 1.08002 * 121.28481 * 58.32576 * 16 14 13 31 31 H 1.09003 * 109.47103 * 270.01835 * 19 18 17 32 32 H 1.09001 * 109.46988 * 30.01794 * 19 18 17 33 33 H 1.08997 * 109.47257 * 150.01690 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6004 1.9833 0.8381 5 6 3.5412 1.4446 0.1326 6 1 4.1509 1.8876 -0.6408 7 6 4.1360 0.8810 1.2414 8 7 5.4463 0.8781 1.3546 9 14 3.0812 0.1154 2.5796 10 1 2.8611 -1.3213 2.2751 11 1 3.7713 0.2441 3.8882 12 1 1.7726 0.8149 2.6392 13 7 1.6588 2.0967 -1.2588 14 6 1.5458 3.5508 -1.0834 15 1 2.3019 3.8647 -0.3638 16 6 0.1805 3.8528 -0.4932 17 7 -0.6025 4.6439 -1.1676 18 6 -0.2467 5.1842 -2.3342 19 6 -1.2476 6.0839 -3.0124 20 7 0.8950 4.9985 -2.9371 21 6 1.8526 4.2148 -2.4141 22 8 2.9140 4.0455 -2.9790 23 1 -0.3633 -1.0277 0.0095 24 1 -0.3633 0.5219 0.8852 25 1 -0.3634 0.5056 -0.8946 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.8648 0.4819 2.1349 29 1 0.8013 1.7087 -1.6227 30 1 -0.1296 3.4269 0.4497 31 1 -1.8820 5.4905 -3.6708 32 1 -1.8640 6.5746 -2.2591 33 1 -0.7207 6.8374 -3.5977 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:13 Heat of formation + Delta-G solvation = 31.910561 kcal Electronic energy + Delta-G solvation = -17032.293217 eV Core-core repulsion = 14287.652751 eV Total energy + Delta-G solvation = -2744.640466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77410 -37.63339 -36.97387 -33.76024 -32.50510 -31.94359 -30.41833 -27.79584 -25.99873 -23.78465 -22.70722 -22.21838 -20.25294 -17.87387 -16.86256 -16.62558 -16.44780 -15.92778 -14.86174 -14.43740 -14.22676 -13.79003 -13.60692 -13.25258 -12.99938 -12.66085 -12.54553 -12.36665 -12.10909 -11.93460 -11.52535 -11.22797 -10.80094 -10.53132 -10.39877 -10.01842 -9.71956 -9.67082 -9.37121 -8.92049 -8.65247 -7.74110 -6.14671 -4.14880 -0.09396 2.15250 3.14990 3.20783 3.28378 3.42137 3.69170 3.75952 4.00396 4.27319 4.64948 4.77056 5.07463 5.13246 5.36503 5.47318 5.48879 5.55023 5.63791 5.65701 5.75169 5.99451 6.22208 6.31055 6.38289 6.50765 6.79649 6.94967 7.44648 7.46362 7.75884 7.87565 8.17007 8.53279 9.01987 9.44649 10.98283 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031749 B = 0.007720 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.710010 B = 3626.065386 C = 4064.688210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.139 4.139 3 C 0.186 3.814 4 H 0.009 0.991 5 C -0.507 4.507 6 H 0.087 0.913 7 C 0.070 3.930 8 N -0.892 5.892 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.295 1.295 12 H -0.267 1.267 13 N -0.628 5.628 14 C -0.032 4.032 15 H 0.150 0.850 16 C 0.239 3.761 17 N -0.565 5.565 18 C 0.418 3.582 19 C -0.100 4.100 20 N -0.607 5.607 21 C 0.514 3.486 22 O -0.412 6.412 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.265 0.735 29 H 0.326 0.674 30 H 0.186 0.814 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.730 5.382 -1.597 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.177 4.177 3 C 0.079 3.921 4 H 0.027 0.973 5 C -0.545 4.545 6 H 0.105 0.895 7 C -0.132 4.132 8 N -0.530 5.530 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.192 1.192 13 N -0.261 5.261 14 C -0.150 4.150 15 H 0.167 0.833 16 C 0.034 3.966 17 N -0.280 5.280 18 C 0.148 3.852 19 C -0.159 4.159 20 N -0.339 5.339 21 C 0.296 3.704 22 O -0.279 6.279 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.203 0.797 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.571 5.864 -2.830 15.959 hybrid contribution -0.635 -1.189 1.954 2.374 sum -15.206 4.675 -0.876 15.932 Atomic orbital electron populations 1.21952 0.97996 1.01199 1.00553 1.22168 0.93021 0.99918 1.02546 1.19863 0.97772 0.89679 0.84818 0.97340 1.21001 0.88539 1.38462 1.06524 0.89540 1.24968 0.94795 0.95747 0.97693 1.69885 1.08787 1.44967 1.29376 0.86968 0.80531 0.79968 0.81409 1.20416 1.22258 1.19247 1.60834 1.36070 0.97041 1.32200 1.23165 0.96763 0.94667 1.00368 0.83336 1.28712 0.90474 0.82345 0.95026 1.67904 1.37978 1.13121 1.09003 1.23542 0.89712 0.86646 0.85348 1.20878 0.96401 0.97946 1.00655 1.69086 1.03935 1.22406 1.38487 1.21081 0.86243 0.78803 0.84323 1.90683 1.23115 1.54414 1.59690 0.93072 0.93278 0.93456 0.90933 0.92143 0.92475 0.85468 0.79726 0.88814 0.89225 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.74 37.16 0.36 -1.97 16 2 C -0.14 -2.68 5.01 -26.73 -0.13 -2.81 16 3 C 0.19 3.92 1.36 -68.87 -0.09 3.82 16 4 H 0.01 0.18 6.33 -51.93 -0.33 -0.15 16 5 C -0.51 -13.66 9.11 -34.44 -0.31 -13.98 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 8 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 9 Si 0.88 20.33 24.41 -169.99 -4.15 16.18 16 10 H -0.28 -6.29 6.83 56.52 0.39 -5.90 16 11 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -5.63 6.53 56.52 0.37 -5.26 16 13 N -0.63 -12.02 5.94 -102.23 -0.61 -12.63 16 14 C -0.03 -0.56 2.80 -68.92 -0.19 -0.76 16 15 H 0.15 2.81 7.58 -51.93 -0.39 2.42 16 16 C 0.24 3.10 10.71 -12.46 -0.13 2.97 16 17 N -0.57 -7.19 10.14 -7.39 -0.07 -7.27 16 18 C 0.42 5.61 7.61 -156.94 -1.19 4.41 16 19 C -0.10 -0.89 10.21 36.01 0.37 -0.52 16 20 N -0.61 -10.38 10.22 -9.61 -0.10 -10.48 16 21 C 0.51 10.17 7.72 -10.61 -0.08 10.08 16 22 O -0.41 -9.87 18.01 5.43 0.10 -9.78 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.62 6.47 -51.93 -0.34 0.28 16 26 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 27 H 0.06 1.26 3.22 -51.93 -0.17 1.10 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.33 5.44 6.23 -39.29 -0.24 5.20 16 30 H 0.19 1.86 7.78 -52.49 -0.41 1.45 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -32.90 275.66 -5.44 -38.34 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.02 Total: 4.33 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.51 Total: 3.09 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.01 Total: -56.32 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.10 Total: -9.78 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.15 Total: 16.18 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.90 -5.44 -38.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.247 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds