Wall clock time and date at job start Thu Apr 9 2020 12:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 H 1.08999 * 109.47073 * 54.64081 * 3 2 1 5 5 C 1.50697 * 109.47268 * 174.64326 * 3 2 1 6 6 H 1.07994 * 119.99943 * 119.99972 * 5 3 2 7 7 C 1.37872 * 119.99866 * 300.00198 * 5 3 2 8 8 N 1.31516 * 119.99891 * 179.72880 * 7 5 3 9 9 Si 1.86800 * 120.00057 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47222 * 90.00055 * 9 7 5 11 11 H 1.48507 * 109.47227 * 210.00333 * 9 7 5 12 12 H 1.48500 * 109.47074 * 330.00032 * 9 7 5 13 13 N 1.46901 * 109.47167 * 294.64379 * 3 2 1 14 14 C 1.46902 * 111.00150 * 153.56506 * 13 3 2 15 15 H 1.08999 * 108.09667 * 34.78597 * 14 13 3 16 16 C 1.51771 * 108.21546 * 277.98523 * 14 13 3 17 17 N 1.30148 * 117.43084 * 238.37465 * 16 14 13 18 18 C 1.33397 * 122.60851 * 359.95588 * 17 16 14 19 19 C 1.50704 * 117.27448 * 180.02562 * 18 17 16 20 20 N 1.30445 * 125.45232 * 0.04372 * 18 17 16 21 21 C 1.34341 * 121.79978 * 359.97438 * 20 18 17 22 22 O 1.21427 * 121.55239 * 180.02562 * 21 20 18 23 23 H 1.09004 * 109.46789 * 180.52819 * 1 2 3 24 24 H 1.08996 * 109.47118 * 300.52329 * 1 2 3 25 25 H 1.08997 * 109.47400 * 60.52883 * 1 2 3 26 26 H 1.09005 * 109.46836 * 240.00503 * 2 1 3 27 27 H 1.08997 * 109.47208 * 120.00380 * 2 1 3 28 28 H 0.97004 * 119.99899 * 179.97438 * 8 7 5 29 29 H 1.00903 * 110.99890 * 29.61367 * 13 3 2 30 30 H 1.08002 * 121.28481 * 58.32576 * 16 14 13 31 31 H 1.09003 * 109.47103 * 270.01835 * 19 18 17 32 32 H 1.09001 * 109.46988 * 30.01794 * 19 18 17 33 33 H 1.08997 * 109.47257 * 150.01690 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6004 1.9833 0.8381 5 6 3.5412 1.4446 0.1326 6 1 4.1509 1.8876 -0.6408 7 6 4.1360 0.8810 1.2414 8 7 5.4463 0.8781 1.3546 9 14 3.0812 0.1154 2.5796 10 1 2.8611 -1.3213 2.2751 11 1 3.7713 0.2441 3.8882 12 1 1.7726 0.8149 2.6392 13 7 1.6588 2.0967 -1.2588 14 6 1.5458 3.5508 -1.0834 15 1 2.3019 3.8647 -0.3638 16 6 0.1805 3.8528 -0.4932 17 7 -0.6025 4.6439 -1.1676 18 6 -0.2467 5.1842 -2.3342 19 6 -1.2476 6.0839 -3.0124 20 7 0.8950 4.9985 -2.9371 21 6 1.8526 4.2148 -2.4141 22 8 2.9140 4.0455 -2.9790 23 1 -0.3633 -1.0277 0.0095 24 1 -0.3633 0.5219 0.8852 25 1 -0.3634 0.5056 -0.8946 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.8648 0.4819 2.1349 29 1 0.8013 1.7087 -1.6227 30 1 -0.1296 3.4269 0.4497 31 1 -1.8820 5.4905 -3.6708 32 1 -1.8640 6.5746 -2.2591 33 1 -0.7207 6.8374 -3.5977 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164845.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:13 Heat of formation + Delta-G solvation = 3.429740 kcal Electronic energy + Delta-G solvation = -17033.528238 eV Core-core repulsion = 14287.652751 eV Total energy + Delta-G solvation = -2745.875487 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07450 -39.08917 -38.52205 -35.11901 -34.25414 -33.48399 -31.49007 -29.38610 -27.45330 -25.02557 -24.25017 -23.49945 -21.90564 -19.28949 -18.61612 -17.97821 -17.85912 -17.45734 -16.53794 -15.81410 -15.71623 -15.13527 -14.86859 -14.66946 -14.36061 -14.18245 -13.71268 -13.61257 -13.27201 -13.04690 -12.89355 -12.73634 -12.47601 -12.22637 -11.85038 -11.51619 -11.30830 -11.16777 -11.01560 -10.71574 -10.34544 -9.20023 -8.26918 -6.33350 -1.27550 0.89588 1.33511 1.37589 1.49741 2.11173 2.33025 2.37900 2.71782 2.81159 3.04944 3.28955 3.51448 4.05125 4.12267 4.25469 4.33476 4.40286 4.62580 4.72079 4.73807 4.84889 4.93877 5.11137 5.19404 5.23056 5.35756 5.65448 5.67805 5.80454 6.20404 6.40836 6.64468 6.77673 6.97022 7.31278 8.91201 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.031749 B = 0.007720 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.710010 B = 3626.065386 C = 4064.688210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C 0.195 3.805 4 H 0.035 0.965 5 C -0.513 4.513 6 H 0.018 0.982 7 C 0.004 3.996 8 N -0.955 5.955 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.304 1.304 12 H -0.220 1.220 13 N -0.650 5.650 14 C -0.032 4.032 15 H 0.126 0.874 16 C 0.265 3.735 17 N -0.552 5.552 18 C 0.430 3.570 19 C -0.099 4.099 20 N -0.644 5.644 21 C 0.511 3.489 22 O -0.483 6.483 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.344 0.656 30 H 0.231 0.769 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.902 5.384 0.039 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.087 3.913 4 H 0.052 0.948 5 C -0.552 4.552 6 H 0.036 0.964 7 C -0.193 4.193 8 N -0.596 5.596 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.232 1.232 12 H -0.142 1.142 13 N -0.285 5.285 14 C -0.150 4.150 15 H 0.144 0.856 16 C 0.062 3.938 17 N -0.266 5.266 18 C 0.164 3.836 19 C -0.157 4.157 20 N -0.379 5.379 21 C 0.296 3.704 22 O -0.356 6.356 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.165 0.835 30 H 0.247 0.753 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.848 5.893 -1.199 20.739 hybrid contribution 0.963 -1.074 1.339 1.968 sum -18.885 4.820 0.140 19.491 Atomic orbital electron populations 1.21892 0.93420 1.03129 1.02442 1.22053 0.97012 0.97499 1.01147 1.19650 0.93636 0.91707 0.86287 0.94768 1.21269 0.91903 1.37316 1.04663 0.96404 1.26010 0.96090 0.96327 1.00865 1.70104 1.11667 1.47164 1.30642 0.85772 0.80171 0.79508 0.76487 1.19512 1.23174 1.14236 1.60434 1.37913 0.98091 1.32081 1.23029 0.99388 0.93551 0.99011 0.85631 1.29021 0.87117 0.81778 0.95893 1.68134 1.36894 1.12938 1.08632 1.24546 0.88999 0.85071 0.84977 1.21122 0.95622 0.97474 1.01499 1.69143 1.05016 1.24212 1.39562 1.21563 0.85850 0.78306 0.84672 1.90640 1.25824 1.57237 1.61853 0.91283 0.91072 0.91830 0.92801 0.93335 0.92617 0.83486 0.75252 0.86432 0.86553 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.74 71.98 0.70 -2.88 16 2 C -0.14 -4.99 5.01 30.60 0.15 -4.83 16 3 C 0.20 7.95 1.36 44.17 0.06 8.01 16 4 H 0.03 1.24 6.33 -2.39 -0.02 1.23 16 5 C -0.51 -28.89 9.11 25.60 0.23 -28.66 16 6 H 0.02 1.21 8.06 -2.91 -0.02 1.18 16 7 C 0.00 0.20 5.45 84.65 0.46 0.66 16 8 N -0.96 -60.39 13.96 21.45 0.30 -60.09 16 9 Si 0.96 41.18 24.41 68.60 1.67 42.85 16 10 H -0.27 -11.17 6.83 99.48 0.68 -10.50 16 11 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 12 H -0.22 -7.73 6.53 99.48 0.65 -7.08 16 13 N -0.65 -24.58 5.94 -477.35 -2.84 -27.41 16 14 C -0.03 -1.12 2.80 44.13 0.12 -0.99 16 15 H 0.13 4.92 7.58 -2.39 -0.02 4.90 16 16 C 0.27 5.78 10.71 88.70 0.95 6.73 16 17 N -0.55 -11.62 10.14 -177.29 -1.80 -13.42 16 18 C 0.43 10.31 7.61 138.66 1.06 11.37 16 19 C -0.10 -1.35 10.21 71.24 0.73 -0.63 16 20 N -0.64 -21.81 10.22 -302.88 -3.10 -24.90 16 21 C 0.51 21.00 7.72 88.09 0.68 21.68 16 22 O -0.48 -25.10 18.01 -3.49 -0.06 -25.16 16 23 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.30 6.47 -2.39 -0.02 1.29 16 26 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 27 H 0.05 1.86 3.22 -2.39 -0.01 1.85 16 28 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.34 10.69 6.23 -89.69 -0.56 10.13 16 30 H 0.23 3.04 7.78 -2.91 -0.02 3.02 16 31 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -80.96 275.66 -0.19 -81.15 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.49 Total: 16.53 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 5.14 Total: 10.45 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -7.43 Total: -125.83 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.06 Total: -25.16 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.67 Total: 42.85 kcal Total: -80.96 -0.19 -81.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164845.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.583 kcal (2) G-P(sol) polarization free energy of solvation -80.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds