Wall clock time and date at job start Thu Apr 9 2020 12:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47095 * 2 1 4 4 H 1.09002 * 109.46883 * 185.13412 * 3 2 1 5 5 C 1.50703 * 109.46906 * 305.12821 * 3 2 1 6 6 H 1.07997 * 119.99253 * 120.00231 * 5 3 2 7 7 C 1.37872 * 120.00311 * 300.00376 * 5 3 2 8 8 N 1.31516 * 119.99990 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00205 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47241 * 119.99573 * 9 7 5 12 12 H 1.48502 * 109.46903 * 239.99974 * 9 7 5 13 13 N 1.46899 * 109.47333 * 65.13415 * 3 2 1 14 14 C 1.46895 * 111.00164 * 86.01649 * 13 3 2 15 15 H 1.09006 * 107.92933 * 323.90155 * 14 13 3 16 16 C 1.51775 * 108.03255 * 80.90829 * 14 13 3 17 17 N 1.30150 * 117.42765 * 121.99814 * 16 14 13 18 18 C 1.33402 * 122.60670 * 359.74515 * 17 16 14 19 19 C 1.50704 * 117.27013 * 179.97438 * 18 17 16 20 20 N 1.30442 * 125.45433 * 359.97438 * 18 17 16 21 21 C 1.34334 * 121.80256 * 0.02562 * 20 18 17 22 22 O 1.21422 * 121.55752 * 179.97438 * 21 20 18 23 23 H 1.08991 * 109.47390 * 294.66260 * 1 2 3 24 24 H 1.09004 * 109.46598 * 54.66207 * 1 2 3 25 25 H 1.09003 * 109.47240 * 174.65503 * 1 2 3 26 26 H 1.09000 * 109.47348 * 239.99628 * 2 1 3 27 27 H 1.09002 * 109.47111 * 119.99760 * 2 1 3 28 28 H 0.97003 * 119.99839 * 179.97438 * 8 7 5 29 29 H 1.00905 * 110.99689 * 322.05956 * 13 3 2 30 30 H 1.07998 * 121.28178 * 301.72479 * 16 14 13 31 31 H 1.08998 * 109.47480 * 269.98403 * 19 18 17 32 32 H 1.09000 * 109.47382 * 29.99011 * 19 18 17 33 33 H 1.09007 * 109.46815 * 149.98307 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0920 5 6 1.4366 2.1886 -1.1621 6 1 0.8274 3.0626 -0.9848 7 6 1.6622 1.7555 -2.4514 8 7 2.4045 0.6915 -2.6672 9 14 0.9149 2.6807 -3.8918 10 1 0.1283 3.8338 -3.3849 11 1 1.9985 3.1724 -4.7802 12 1 0.0232 1.7712 -4.6553 13 7 1.6541 2.0983 1.2566 14 6 2.6436 1.8394 2.3110 15 1 3.0136 0.8223 2.1815 16 6 3.8025 2.7994 2.1138 17 7 4.0975 3.5940 3.1014 18 6 3.4228 3.5915 4.2522 19 6 3.8679 4.5622 5.3157 20 7 2.4101 2.8191 4.5339 21 6 1.9385 1.9208 3.6535 22 8 0.9958 1.2037 3.9206 23 1 -0.3634 0.4288 0.9338 24 1 -0.3633 0.5944 -0.8384 25 1 -0.3634 -1.0232 -0.0957 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.5629 0.3866 -3.5744 29 1 0.7320 1.8093 1.5470 30 1 4.3635 2.8192 1.1911 31 1 4.6189 4.0890 5.9483 32 1 4.2952 5.4471 4.8441 33 1 3.0112 4.8526 5.9239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164847.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:14 Heat of formation + Delta-G solvation = 19.300760 kcal Electronic energy + Delta-G solvation = -16967.692295 eV Core-core repulsion = 14222.505027 eV Total energy + Delta-G solvation = -2745.187268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75170 -37.81608 -36.67839 -33.67971 -32.58051 -31.25062 -30.09996 -27.25263 -25.56843 -23.83204 -23.12307 -22.34996 -19.58980 -17.96294 -16.76414 -16.41624 -15.91006 -15.31706 -14.82248 -14.58484 -14.11702 -13.65393 -13.49958 -13.21509 -12.72149 -12.60862 -12.47886 -12.15179 -11.83668 -11.62115 -11.05920 -10.90841 -10.63979 -10.29935 -10.16457 -9.95458 -9.71293 -9.65524 -9.15524 -8.77502 -8.50851 -7.72833 -6.14111 -4.16830 -0.01371 2.19389 3.23474 3.32501 3.36028 3.42012 3.75646 3.83461 4.15661 4.32454 4.66957 5.04575 5.17981 5.20540 5.28422 5.42164 5.54710 5.77793 6.08719 6.24108 6.27587 6.39986 6.79578 6.83902 7.00723 7.08165 7.38833 7.46492 7.63724 7.67665 7.96027 8.10775 8.19570 8.30276 8.88331 9.47691 10.92892 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032465 B = 0.006962 C = 0.006238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.252588 B = 4020.995965 C = 4487.642461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C 0.210 3.790 4 H 0.039 0.961 5 C -0.494 4.494 6 H 0.065 0.935 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.652 5.652 14 C -0.050 4.050 15 H 0.107 0.893 16 C 0.320 3.680 17 N -0.579 5.579 18 C 0.436 3.564 19 C -0.102 4.102 20 N -0.619 5.619 21 C 0.511 3.489 22 O -0.449 6.449 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.098 0.902 27 H 0.012 0.988 28 H 0.261 0.739 29 H 0.347 0.653 30 H 0.194 0.806 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 3.950 8.692 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.186 4.186 3 C 0.103 3.897 4 H 0.056 0.944 5 C -0.533 4.533 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.289 5.289 14 C -0.167 4.167 15 H 0.123 0.877 16 C 0.119 3.881 17 N -0.294 5.294 18 C 0.168 3.832 19 C -0.161 4.161 20 N -0.353 5.353 21 C 0.295 3.705 22 O -0.320 6.320 23 H 0.048 0.952 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.116 0.884 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.169 0.831 30 H 0.210 0.790 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.700 4.482 9.453 11.469 hybrid contribution -0.811 -1.294 -1.497 2.139 sum 3.889 3.187 7.956 9.412 Atomic orbital electron populations 1.21604 0.97319 0.99147 1.00937 1.22114 0.95541 1.00465 1.00495 1.19500 0.96324 0.89278 0.84641 0.94367 1.20972 1.31253 1.11815 0.89215 0.91716 1.24888 0.95296 0.95077 0.98772 1.69872 1.38556 1.23742 1.21010 0.86457 0.79011 0.79864 0.82231 1.19690 1.21019 1.21100 1.61304 1.03093 1.62823 1.01688 1.22977 0.97009 1.00561 0.96168 0.87658 1.27913 0.86121 0.79680 0.94396 1.68034 1.33050 1.25920 1.02424 1.23597 0.82525 0.87156 0.89938 1.20906 1.02883 0.96949 0.95319 1.69017 1.16692 1.12182 1.37409 1.21314 0.83329 0.80762 0.85066 1.90666 1.24085 1.38686 1.78570 0.95174 0.91107 0.95409 0.88408 0.96977 0.92887 0.83103 0.78953 0.88738 0.88973 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.40 37.16 0.35 -2.48 16 2 C -0.15 -3.26 5.49 -26.73 -0.15 -3.41 16 3 C 0.21 4.67 2.07 -68.86 -0.14 4.53 16 4 H 0.04 0.87 7.17 -51.93 -0.37 0.50 16 5 C -0.49 -12.35 7.25 -34.44 -0.25 -12.60 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.56 5.28 -17.82 -0.09 1.46 16 8 N -0.89 -23.40 11.38 55.43 0.63 -22.77 16 9 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.65 -13.13 5.99 -102.22 -0.61 -13.74 16 14 C -0.05 -0.87 2.86 -68.92 -0.20 -1.07 16 15 H 0.11 1.80 7.03 -51.93 -0.36 1.44 16 16 C 0.32 4.66 10.92 -12.46 -0.14 4.52 16 17 N -0.58 -8.15 10.14 -7.39 -0.07 -8.22 16 18 C 0.44 6.20 7.61 -156.94 -1.19 5.00 16 19 C -0.10 -0.97 10.21 36.01 0.37 -0.60 16 20 N -0.62 -10.74 10.22 -9.61 -0.10 -10.83 16 21 C 0.51 9.78 7.55 -10.61 -0.08 9.70 16 22 O -0.45 -9.79 17.52 5.43 0.10 -9.69 16 23 H 0.03 0.61 6.64 -51.93 -0.34 0.27 16 24 H 0.07 1.62 6.85 -51.93 -0.36 1.27 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.10 2.41 6.23 -51.93 -0.32 2.09 16 27 H 0.01 0.25 7.38 -51.93 -0.38 -0.14 16 28 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.35 7.40 5.83 -39.29 -0.23 7.17 16 30 H 0.19 2.40 7.70 -52.49 -0.40 1.99 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 278.26 15.07 4.19 4.19 Total: -1.00 -28.96 278.26 -6.42 -35.38 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.01 Total: 5.40 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.52 Total: 5.05 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.15 Total: -55.56 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.10 Total: -9.69 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.96 -6.42 -35.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164847.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.682 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds