Wall clock time and date at job start Thu Apr 9 2020 12:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46733 * 2 1 4 4 C 1.52999 * 109.47278 * 240.00391 * 2 1 3 5 5 C 1.50701 * 109.46998 * 174.99995 * 4 2 1 6 6 C 1.38245 * 119.97248 * 269.72457 * 5 4 2 7 7 C 1.38198 * 120.02267 * 179.72560 * 6 5 4 8 8 C 1.38461 * 119.97537 * 0.56810 * 7 6 5 9 9 F 1.35105 * 120.02701 * 179.68164 * 8 7 6 10 10 C 1.38458 * 119.94934 * 359.70341 * 8 7 6 11 11 C 1.38200 * 119.96965 * 0.02562 * 10 8 7 12 12 N 1.46492 * 109.46930 * 119.99822 * 2 1 3 13 13 C 1.46506 * 119.99756 * 60.00367 * 12 2 1 14 14 C 1.36939 * 120.00271 * 240.00226 * 12 2 1 15 15 H 1.07999 * 119.99866 * 334.67515 * 14 12 2 16 16 C 1.38818 * 120.00018 * 154.67431 * 14 12 2 17 17 N 1.31618 * 119.99903 * 4.08928 * 16 14 12 18 18 Si 1.86800 * 119.99547 * 184.08662 * 16 14 12 19 19 H 1.48493 * 109.47192 * 60.00281 * 18 16 14 20 20 H 1.48503 * 109.46739 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47316 * 299.99485 * 18 16 14 22 22 H 1.09000 * 109.46892 * 59.99972 * 1 2 3 23 23 H 1.09004 * 109.46678 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47323 * 299.99825 * 1 2 3 25 25 H 1.09002 * 109.47072 * 294.99420 * 4 2 1 26 26 H 1.08999 * 109.47333 * 55.00158 * 4 2 1 27 27 H 1.07993 * 119.98993 * 359.97438 * 6 5 4 28 28 H 1.08001 * 120.01340 * 180.29693 * 7 6 5 29 29 H 1.07993 * 120.01635 * 179.97438 * 10 8 7 30 30 H 1.08009 * 119.98509 * 179.97438 * 11 10 8 31 31 H 1.08990 * 109.47352 * 264.48063 * 13 12 2 32 32 H 1.09002 * 109.46672 * 144.48441 * 13 12 2 33 33 H 1.08999 * 109.47168 * 24.48944 * 13 12 2 34 34 H 0.96996 * 119.99876 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6148 -1.3127 6 6 4.1319 0.4468 -1.9732 7 6 5.5091 0.5484 -2.0271 8 6 6.2981 -0.4197 -1.4294 9 9 7.6446 -0.3248 -1.4870 10 6 5.7062 -1.4855 -0.7730 11 6 4.3288 -1.5820 -0.7156 12 7 2.0183 -0.6905 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.8055 -0.0251 2.0976 15 1 3.3979 0.8193 1.7773 16 6 2.8422 -0.4357 3.4231 17 7 2.1840 -1.5125 3.7969 18 14 3.8257 0.5399 4.6762 19 1 3.3017 1.9276 4.7449 20 1 3.7039 -0.1023 6.0096 21 1 5.2538 0.5694 4.2703 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.7518 -1.7715 -1.2056 26 1 1.6055 -0.2616 -2.1370 27 1 3.5163 1.1990 -2.4438 28 1 5.9698 1.3803 -2.5391 29 1 6.3206 -2.2414 -0.3068 30 1 3.8667 -2.4134 -0.2039 31 1 0.7933 -2.1450 2.0809 32 1 2.5027 -2.6063 1.8992 33 1 1.4341 -2.5719 0.4761 34 1 2.2093 -1.7992 4.7232 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255876611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:33 Heat of formation + Delta-G solvation = -4.919632 kcal Electronic energy + Delta-G solvation = -17068.693784 eV Core-core repulsion = 14302.536279 eV Total energy + Delta-G solvation = -2766.157505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -48.52069 -38.87094 -36.29876 -32.88501 -30.73125 -30.60458 -29.03044 -25.97208 -25.66623 -22.99142 -22.58453 -21.17514 -18.92117 -17.26306 -16.85247 -15.91627 -15.23996 -15.20381 -14.94044 -13.92596 -13.72642 -13.44349 -13.16438 -12.92291 -12.64400 -12.25801 -12.02060 -11.54980 -11.44225 -11.24955 -10.76738 -10.75081 -10.53443 -10.34543 -10.25347 -10.20217 -9.76427 -9.75202 -8.64561 -8.45682 -8.02323 -6.66417 -5.67763 -3.12504 1.61682 1.70670 3.41987 3.46747 3.48222 4.05909 4.53111 4.67236 5.10380 5.23657 5.33497 5.42044 5.52200 5.71364 5.79123 5.86566 6.09541 6.10648 6.26504 6.37561 6.40697 6.47284 6.52399 6.56020 6.72732 6.81937 6.93042 7.04038 7.14163 7.37318 7.52176 7.82925 7.90094 8.48293 9.32581 9.93862 10.43622 11.36841 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.009864 C = 0.007486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.431947 B = 2837.949263 C = 3739.622708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.176 3.824 3 H 0.062 0.938 4 C -0.100 4.100 5 C -0.060 4.060 6 C -0.099 4.099 7 C -0.159 4.159 8 C 0.077 3.923 9 F -0.151 7.151 10 C -0.151 4.151 11 C -0.056 4.056 12 N -0.593 5.593 13 C 0.167 3.833 14 C -0.243 4.243 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.911 5.911 18 Si 0.898 3.102 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.285 1.285 22 H 0.038 0.962 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.131 0.869 31 H 0.023 0.977 32 H 0.050 0.950 33 H -0.009 1.009 34 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 0.906 -11.193 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.067 3.933 3 H 0.080 0.920 4 C -0.139 4.139 5 C -0.060 4.060 6 C -0.117 4.117 7 C -0.178 4.178 8 C 0.058 3.942 9 F -0.130 7.130 10 C -0.170 4.170 11 C -0.074 4.074 12 N -0.316 5.316 13 C 0.023 3.977 14 C -0.373 4.373 15 H 0.082 0.918 16 C -0.193 4.193 17 N -0.557 5.557 18 Si 0.728 3.272 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.211 1.211 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.009 0.991 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.868 0.812 -10.997 11.185 hybrid contribution 0.808 0.559 0.969 1.380 sum 2.676 1.371 -10.029 10.470 Atomic orbital electron populations 1.22271 0.98392 1.00970 1.00136 1.20322 0.91446 0.95286 0.86201 0.91986 1.21260 0.90515 1.02404 0.99717 1.19864 0.96407 0.93976 0.95752 1.20812 0.93411 0.97920 0.99579 1.20936 0.94296 0.99291 1.03249 1.17661 0.76472 0.97660 1.02440 1.91439 1.30131 1.96299 1.95101 1.21089 0.96116 0.98373 1.01413 1.20905 0.91824 0.99100 0.95578 1.43876 1.57767 1.08098 1.21862 1.20826 0.99967 0.83715 0.93234 1.19107 1.18158 1.11940 0.88055 0.91792 1.25088 0.99269 0.97944 0.96972 1.70062 1.45453 1.23942 1.16269 0.86430 0.79760 0.79895 0.81106 1.21093 1.21716 1.21122 0.94279 0.93410 0.92715 0.91171 0.91917 0.85772 0.85694 0.85494 0.85100 0.95896 0.93104 0.99068 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.19 37.16 0.34 -2.44 16 2 C 0.18 3.41 2.69 -67.93 -0.18 3.23 16 3 H 0.06 1.24 7.88 -51.92 -0.41 0.84 16 4 C -0.10 -1.62 4.78 -27.88 -0.13 -1.75 16 5 C -0.06 -1.01 4.95 -104.62 -0.52 -1.53 16 6 C -0.10 -1.51 9.70 -39.59 -0.38 -1.89 16 7 C -0.16 -2.43 10.03 -39.51 -0.40 -2.82 16 8 C 0.08 1.29 7.30 -39.42 -0.29 1.00 16 9 F -0.15 -2.52 17.27 2.25 0.04 -2.48 16 10 C -0.15 -2.58 10.03 -39.51 -0.40 -2.98 16 11 C -0.06 -1.00 9.31 -39.59 -0.37 -1.36 16 12 N -0.59 -14.03 2.20 -173.48 -0.38 -14.41 16 13 C 0.17 3.94 7.36 59.85 0.44 4.38 16 14 C -0.24 -6.50 9.59 -15.06 -0.14 -6.64 16 15 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.00 0.13 5.38 -17.43 -0.09 0.04 16 17 N -0.91 -26.13 10.12 55.49 0.56 -25.57 16 18 Si 0.90 22.09 29.56 -169.99 -5.02 17.06 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.83 7.67 -51.93 -0.40 0.44 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.15 6.44 -51.93 -0.33 0.82 16 26 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 27 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.13 2.41 7.43 -52.48 -0.39 2.02 16 31 H 0.02 0.59 7.44 -51.93 -0.39 0.21 16 32 H 0.05 1.31 7.03 -51.93 -0.37 0.95 16 33 H -0.01 -0.19 6.36 -51.93 -0.33 -0.52 16 34 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 285.68 15.07 4.31 4.31 Total: -1.00 -28.63 285.68 -7.32 -35.95 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.69 Total: -2.07 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -2.12 Total: -12.78 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.18 Total: -39.98 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.63 -7.32 -35.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255876611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.028 kcal (2) G-P(sol) polarization free energy of solvation -28.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds