Wall clock time and date at job start Thu Apr 9 2020 12:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46793 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99612 * 2 1 3 5 5 N 1.46499 * 109.46840 * 174.99842 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21690 * 119.99916 * 0.02562 * 6 5 4 8 8 C 1.46680 * 119.99908 * 180.02562 * 6 5 4 9 9 C 1.37871 * 126.23347 * 180.02562 * 8 6 5 10 10 C 1.39835 * 107.08496 * 179.97438 * 9 8 6 11 11 C 1.35453 * 107.86523 * 0.02562 * 10 9 8 12 12 N 1.35529 * 108.87001 * 359.72815 * 11 10 9 13 13 H 0.97000 * 125.67670 * 180.30502 * 12 11 10 14 14 N 1.46496 * 109.47348 * 239.99940 * 2 1 3 15 15 C 1.36941 * 120.00198 * 84.99697 * 14 2 1 16 16 H 1.07996 * 119.99379 * 0.02562 * 15 14 2 17 17 C 1.38810 * 119.99828 * 180.02562 * 15 14 2 18 18 N 1.31617 * 120.00148 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99611 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47407 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47025 * 120.00299 * 19 17 15 22 22 H 1.48504 * 109.47341 * 239.99944 * 19 17 15 23 23 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47312 * 300.00425 * 1 2 3 25 25 H 1.09004 * 109.46964 * 60.00223 * 1 2 3 26 26 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 27 27 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 28 28 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 29 29 H 1.08000 * 126.45654 * 0.03333 * 9 8 6 30 30 H 1.08000 * 126.06190 * 179.97438 * 10 9 8 31 31 H 1.07995 * 125.55853 * 180.02562 * 11 10 9 32 32 H 0.97002 * 119.99429 * 265.00252 * 14 2 1 33 33 H 0.97004 * 120.00027 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4291 2.1908 7 8 3.5676 -1.8864 3.1424 8 6 5.6348 -1.5339 2.1324 9 6 6.4482 -2.1210 3.0782 10 6 7.7642 -1.9978 2.6217 11 6 7.7325 -1.3515 1.4318 12 7 6.4440 -1.0691 1.1205 13 1 6.1424 -0.6137 0.3189 14 7 2.0184 -0.6906 -1.1961 15 6 2.1492 -0.0075 -2.3758 16 1 1.8926 1.0404 -2.4241 17 6 2.6114 -0.6621 -3.5092 18 7 2.9236 -1.9393 -3.4503 19 14 2.7905 0.2699 -5.1181 20 1 2.3776 1.6826 -4.9205 21 1 4.2073 0.2260 -5.5605 22 1 1.9293 -0.3579 -6.1524 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.7515 -0.1582 2.1370 27 1 1.6053 -1.7197 1.2953 28 1 3.9824 -0.4622 0.4320 29 1 6.1290 -2.5888 3.9978 30 1 8.6489 -2.3540 3.1286 31 1 8.5931 -1.1059 0.8274 32 1 2.2491 -1.6318 -1.1525 33 1 3.2462 -2.3968 -4.2424 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265753074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:40 Heat of formation + Delta-G solvation = 12.339413 kcal Electronic energy + Delta-G solvation = -16479.806122 eV Core-core repulsion = 13734.316987 eV Total energy + Delta-G solvation = -2745.489135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08516 -38.80834 -36.32551 -33.64291 -32.00248 -30.86123 -29.36677 -28.65866 -25.85432 -23.78049 -22.21043 -20.44574 -20.21293 -19.85003 -18.57000 -17.34457 -15.71681 -15.52688 -15.25402 -14.70282 -14.06126 -13.82454 -13.56588 -13.43435 -13.07427 -12.58258 -12.29240 -12.21699 -12.11959 -11.97624 -11.43428 -10.96993 -10.83129 -10.40931 -10.07997 -9.81116 -9.80449 -9.08163 -8.92535 -8.76353 -8.10248 -7.13386 -5.90354 -3.21226 1.66263 2.85250 3.24031 3.32308 3.39367 3.41339 3.52696 3.67295 4.46279 5.12152 5.14651 5.37891 5.40927 5.42727 5.50902 5.56968 5.87831 6.03531 6.12542 6.15410 6.21447 6.29314 6.50380 6.67871 6.74075 6.81210 6.97269 7.03144 7.46725 7.57932 7.88084 8.26805 8.48565 9.38798 9.93673 10.29508 11.31279 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.006938 C = 0.005514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.429878 B = 4034.486297 C = 5077.147087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.053 0.947 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.584 3.416 7 O -0.544 6.544 8 C -0.048 4.048 9 C -0.116 4.116 10 C -0.217 4.217 11 C 0.019 3.981 12 N -0.534 5.534 13 H 0.421 0.579 14 N -0.725 5.725 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.011 4.011 18 N -0.929 5.929 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.291 1.291 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.404 0.596 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.169 0.831 32 H 0.385 0.615 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.570 3.102 8.885 11.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.071 0.929 4 C -0.009 4.009 5 N -0.364 5.364 6 C 0.371 3.629 7 O -0.422 6.422 8 C -0.162 4.162 9 C -0.143 4.143 10 C -0.241 4.241 11 C -0.118 4.118 12 N -0.130 5.130 13 H 0.259 0.741 14 N -0.367 5.367 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.218 1.218 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.239 0.761 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.186 0.814 32 H 0.219 0.781 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.014 2.989 9.280 11.455 hybrid contribution 0.265 0.459 -1.855 1.930 sum 6.279 3.448 7.425 10.317 Atomic orbital electron populations 1.22352 0.98130 1.01368 1.00430 1.20529 0.92835 0.95684 0.86121 0.92885 1.21724 0.78985 1.01374 0.98783 1.45873 1.08578 1.58917 1.22992 1.17099 0.84836 0.78229 0.82766 1.90794 1.68551 1.49077 1.33795 1.20557 0.90884 1.11273 0.93469 1.21264 0.92018 1.01700 0.99277 1.20847 0.97429 1.08082 0.97749 1.22017 0.86489 1.04145 0.99130 1.42145 1.06627 1.45401 1.18823 0.74108 1.42505 1.78106 1.10852 1.05271 1.19277 1.36952 0.93928 0.87355 0.91026 1.24758 1.02033 0.95908 0.98025 1.69679 1.50525 1.08581 1.28892 0.86147 0.77282 0.78814 0.84074 1.20553 1.21917 1.21800 0.93127 0.94098 0.92306 0.91569 0.91572 0.76051 0.83748 0.84184 0.81409 0.78087 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.49 37.16 0.35 -2.41 16 2 C 0.16 2.92 3.05 -67.93 -0.21 2.71 16 3 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 4 C 0.12 1.98 5.23 -4.04 -0.02 1.95 16 5 N -0.71 -12.08 5.38 -61.62 -0.33 -12.41 16 6 C 0.58 10.40 7.79 -12.85 -0.10 10.30 16 7 O -0.54 -11.16 16.88 5.20 0.09 -11.08 16 8 C -0.05 -0.75 7.06 -81.98 -0.58 -1.33 16 9 C -0.12 -1.69 10.65 -39.12 -0.42 -2.10 16 10 C -0.22 -2.61 10.81 -39.98 -0.43 -3.05 16 11 C 0.02 0.21 11.89 -16.91 -0.20 0.01 16 12 N -0.53 -6.93 5.99 -9.39 -0.06 -6.98 16 13 H 0.42 4.93 8.19 -40.82 -0.33 4.59 16 14 N -0.72 -16.60 4.56 -53.42 -0.24 -16.85 16 15 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 19 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.40 6.70 7.27 -40.82 -0.30 6.40 16 29 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 30 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.39 9.66 7.80 -40.82 -0.32 9.35 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 290.51 15.07 4.38 4.38 Total: -1.00 -30.58 290.51 -6.61 -37.19 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -4.30 Total: 16.09 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.85 Total: -0.70 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: 0.09 Total: -62.08 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.58 -6.61 -37.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265753074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.528 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds