Wall clock time and date at job start Thu Apr 9 2020 12:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.47206 * 109.47168 * 119.99757 * 2 1 3 5 5 N 2.60798 * 109.47035 * 119.99767 * 2 1 3 6 6 C 1.50701 * 109.47212 * 239.99807 * 2 1 3 7 7 O 1.21273 * 119.99897 * 239.99691 * 6 2 1 8 8 N 1.34776 * 119.99804 * 60.00144 * 6 2 1 9 9 C 1.46500 * 119.99873 * 179.97438 * 8 6 2 10 10 C 1.52996 * 109.47249 * 179.97438 * 9 8 6 11 11 H 1.09004 * 112.96122 * 55.33137 * 10 9 8 12 12 C 1.53936 * 113.77187 * 187.01492 * 10 9 8 13 13 C 1.53950 * 86.29314 * 137.90802 * 12 10 9 14 14 N 1.47586 * 113.77124 * 283.66171 * 10 9 8 15 15 C 1.36939 * 134.49259 * 41.05988 * 14 10 9 16 16 H 1.07995 * 120.00100 * 0.02562 * 15 14 10 17 17 C 1.38813 * 119.99781 * 180.02562 * 15 14 10 18 18 N 1.31619 * 120.00108 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47152 * 89.99827 * 19 17 15 21 21 H 1.48500 * 109.47111 * 209.99824 * 19 17 15 22 22 H 1.48496 * 109.47228 * 330.00063 * 19 17 15 23 23 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 24 24 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 0.96996 * 119.99848 * 0.02562 * 8 6 2 27 27 H 1.09000 * 109.47381 * 299.99983 * 9 8 6 28 28 H 1.09001 * 109.46596 * 60.00232 * 9 8 6 29 29 H 1.09009 * 113.74327 * 252.25595 * 12 10 9 30 30 H 1.09001 * 113.74443 * 23.45412 * 12 10 9 31 31 H 1.09003 * 113.76671 * 90.69279 * 13 12 10 32 32 H 1.08995 * 113.77219 * 222.08760 * 13 12 10 33 33 H 0.96999 * 119.99960 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2020 5 7 2.3993 -1.2293 2.1295 6 6 2.0323 -0.7105 -1.2304 7 8 2.7296 -1.6964 -1.1191 8 7 1.7068 -0.2500 -2.4545 9 6 2.1956 -0.9403 -3.6507 10 6 1.6850 -0.2195 -4.8999 11 1 1.9473 0.8383 -4.9176 12 6 1.9973 -0.9584 -6.2138 13 6 0.5661 -0.5897 -6.6447 14 7 0.2649 -0.4853 -5.2014 15 6 -0.8726 -0.5926 -4.4466 16 1 -0.8230 -0.4704 -3.3748 17 6 -2.0896 -0.8584 -5.0593 18 7 -2.1501 -1.0067 -6.3657 19 14 -3.6414 -1.0040 -4.0299 20 1 -4.2789 0.3312 -3.9037 21 1 -4.5854 -1.9430 -4.6875 22 1 -3.2938 -1.5161 -2.6800 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.1494 0.5389 -2.5435 27 1 3.2856 -0.9399 -3.6505 28 1 1.8325 -1.9681 -3.6508 29 1 2.7728 -0.4804 -6.8125 30 1 2.1574 -2.0292 -6.0878 31 1 0.4980 0.3599 -7.1757 32 1 0.0366 -1.3987 -7.1479 33 1 -3.0004 -1.1928 -6.7938 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276808668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:53 Heat of formation + Delta-G solvation = 39.485188 kcal Electronic energy + Delta-G solvation = -16718.124656 eV Core-core repulsion = 13973.812650 eV Total energy + Delta-G solvation = -2744.312006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88609 -38.04877 -36.52021 -34.32237 -33.17845 -32.20334 -28.09619 -27.67671 -25.22739 -23.42395 -22.42148 -20.69073 -19.25922 -18.05780 -17.22936 -16.55080 -15.58879 -15.30520 -15.00890 -14.41865 -13.95046 -13.79020 -13.37832 -13.12895 -12.98451 -12.69377 -12.30300 -11.99173 -11.84787 -11.54648 -11.45709 -11.16619 -11.06918 -10.77822 -10.61679 -10.10326 -9.81494 -9.74989 -9.42908 -8.85452 -8.73068 -6.95440 -5.82039 -3.14826 2.53226 2.60783 2.83043 3.32932 3.37414 3.41301 3.46385 3.81253 4.36861 4.73433 4.77232 4.90770 5.07829 5.33453 5.48780 5.55718 5.59543 5.64721 5.85154 5.98765 6.02384 6.25132 6.35059 6.56164 6.62282 6.75689 7.18588 7.35235 7.47544 7.53459 7.70677 7.91963 8.32706 8.97377 9.65406 10.53725 11.34775 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.008052 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.895278 B = 3476.389777 C = 4575.864513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.013 4.013 3 H 0.138 0.862 4 C 0.229 3.771 5 N -0.423 5.423 6 C 0.519 3.481 7 O -0.540 6.540 8 N -0.704 5.704 9 C 0.123 3.877 10 C 0.126 3.874 11 H 0.051 0.949 12 C -0.156 4.156 13 C 0.158 3.842 14 N -0.603 5.603 15 C -0.221 4.221 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 0.906 3.094 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.406 0.594 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.781 5.795 5.240 9.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 H 0.156 0.844 4 C -0.090 4.090 5 N -0.098 5.098 6 C 0.302 3.698 7 O -0.418 6.418 8 N -0.355 5.355 9 C -0.002 4.002 10 C 0.018 3.982 11 H 0.068 0.932 12 C -0.195 4.195 13 C 0.033 3.967 14 N -0.329 5.329 15 C -0.349 4.349 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.736 3.264 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.206 1.206 23 H 0.107 0.893 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.241 0.759 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.498 4.207 6.742 10.266 hybrid contribution -1.412 0.639 0.041 1.551 sum 5.086 4.846 6.783 9.765 Atomic orbital electron populations 1.21838 0.89369 1.04721 1.04550 1.18891 0.98995 1.00031 0.85854 0.84409 1.28165 0.93398 0.93644 0.93834 1.81143 1.08208 1.08065 1.12405 1.19893 0.80847 0.84775 0.84312 1.90751 1.38293 1.26080 1.86657 1.45857 1.52523 1.31978 1.05104 1.21834 0.97659 0.97567 0.83121 1.22507 0.87236 0.96336 0.92103 0.93172 1.23765 0.99137 1.00216 0.96383 1.22239 0.88690 0.98622 0.87124 1.46106 1.01319 1.82449 1.03065 1.18923 0.84122 1.41964 0.89869 0.90232 1.24765 0.97465 1.02320 0.95757 1.69811 1.24682 1.54389 1.07636 0.86226 0.83466 0.77475 0.79240 1.21634 1.21701 1.20554 0.89270 0.90868 0.90523 0.75893 0.91943 0.90788 0.92760 0.90495 0.95483 0.90863 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.04 37.16 0.34 -1.07 16 2 C -0.01 -0.14 3.10 -94.56 -0.29 -0.43 16 3 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.23 3.17 13.88 -20.76 -0.29 2.88 16 5 N -0.42 -6.93 18.54 42.15 0.78 -6.15 16 6 C 0.52 7.56 7.14 -10.99 -0.08 7.49 16 7 O -0.54 -10.26 16.03 5.56 0.09 -10.17 16 8 N -0.70 -10.03 5.24 -60.30 -0.32 -10.34 16 9 C 0.12 1.99 5.54 -4.04 -0.02 1.97 16 10 C 0.13 2.19 4.32 -66.87 -0.29 1.90 16 11 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.16 -2.65 7.86 -25.80 -0.20 -2.86 16 13 C 0.16 3.43 7.52 -2.85 -0.02 3.41 16 14 N -0.60 -13.62 3.59 -169.73 -0.61 -14.23 16 15 C -0.22 -5.50 10.51 -15.06 -0.16 -5.65 16 16 H 0.08 1.82 7.49 -52.49 -0.39 1.43 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -25.89 11.40 55.49 0.63 -25.26 16 19 Si 0.91 20.80 29.55 -169.99 -5.02 15.77 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H 0.09 0.81 7.56 -51.93 -0.39 0.42 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.41 5.12 7.77 -40.82 -0.32 4.80 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 30 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 291.63 15.07 4.39 4.39 Total: -1.00 -32.46 291.63 -5.58 -38.04 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.41 Total: 0.58 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -1.11 Total: 7.37 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.49 Total: -55.98 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.46 -5.58 -38.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276808668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.520 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds