Wall clock time and date at job start Thu Apr 9 2020 12:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.47206 * 109.47168 * 119.99757 * 2 1 3 5 5 N 2.60798 * 109.47035 * 119.99767 * 2 1 3 6 6 C 1.50701 * 109.47212 * 239.99807 * 2 1 3 7 7 O 1.21273 * 119.99897 * 239.99691 * 6 2 1 8 8 N 1.34776 * 119.99804 * 60.00144 * 6 2 1 9 9 C 1.46500 * 119.99873 * 179.97438 * 8 6 2 10 10 C 1.52996 * 109.47249 * 179.97438 * 9 8 6 11 11 H 1.09004 * 112.96122 * 55.33137 * 10 9 8 12 12 C 1.53936 * 113.77187 * 187.01492 * 10 9 8 13 13 C 1.53950 * 86.29314 * 137.90802 * 12 10 9 14 14 N 1.47586 * 113.77124 * 283.66171 * 10 9 8 15 15 C 1.36939 * 134.49259 * 41.05988 * 14 10 9 16 16 H 1.07995 * 120.00100 * 0.02562 * 15 14 10 17 17 C 1.38813 * 119.99781 * 180.02562 * 15 14 10 18 18 N 1.31619 * 120.00108 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47152 * 89.99827 * 19 17 15 21 21 H 1.48500 * 109.47111 * 209.99824 * 19 17 15 22 22 H 1.48496 * 109.47228 * 330.00063 * 19 17 15 23 23 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 24 24 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 0.96996 * 119.99848 * 0.02562 * 8 6 2 27 27 H 1.09000 * 109.47381 * 299.99983 * 9 8 6 28 28 H 1.09001 * 109.46596 * 60.00232 * 9 8 6 29 29 H 1.09009 * 113.74327 * 252.25595 * 12 10 9 30 30 H 1.09001 * 113.74443 * 23.45412 * 12 10 9 31 31 H 1.09003 * 113.76671 * 90.69279 * 13 12 10 32 32 H 1.08995 * 113.77219 * 222.08760 * 13 12 10 33 33 H 0.96999 * 119.99960 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 1.2020 5 7 2.3993 -1.2293 2.1295 6 6 2.0323 -0.7105 -1.2304 7 8 2.7296 -1.6964 -1.1191 8 7 1.7068 -0.2500 -2.4545 9 6 2.1956 -0.9403 -3.6507 10 6 1.6850 -0.2195 -4.8999 11 1 1.9473 0.8383 -4.9176 12 6 1.9973 -0.9584 -6.2138 13 6 0.5661 -0.5897 -6.6447 14 7 0.2649 -0.4853 -5.2014 15 6 -0.8726 -0.5926 -4.4466 16 1 -0.8230 -0.4704 -3.3748 17 6 -2.0896 -0.8584 -5.0593 18 7 -2.1501 -1.0067 -6.3657 19 14 -3.6414 -1.0040 -4.0299 20 1 -4.2789 0.3312 -3.9037 21 1 -4.5854 -1.9430 -4.6875 22 1 -3.2938 -1.5161 -2.6800 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.1494 0.5389 -2.5435 27 1 3.2856 -0.9399 -3.6505 28 1 1.8325 -1.9681 -3.6508 29 1 2.7728 -0.4804 -6.8125 30 1 2.1574 -2.0292 -6.0878 31 1 0.4980 0.3599 -7.1757 32 1 0.0366 -1.3987 -7.1479 33 1 -3.0004 -1.1928 -6.7938 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276808668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:52 Heat of formation + Delta-G solvation = 16.422427 kcal Electronic energy + Delta-G solvation = -16719.124733 eV Core-core repulsion = 13973.812650 eV Total energy + Delta-G solvation = -2745.312082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09173 -39.57720 -37.67520 -35.60748 -34.32908 -33.93609 -29.83303 -29.10630 -26.13017 -25.21115 -23.86509 -21.90002 -20.84264 -19.32507 -18.45029 -17.98240 -17.00510 -16.74319 -16.27437 -15.87562 -15.49690 -15.10662 -14.77168 -14.49541 -14.16347 -13.75808 -13.52657 -13.29384 -13.15567 -12.88671 -12.80278 -12.58753 -12.47566 -12.40608 -12.27471 -11.77915 -11.44717 -11.29983 -10.81519 -10.73304 -10.00575 -8.80428 -7.78370 -5.09518 1.43105 1.50962 1.52970 1.53420 1.59917 1.72281 2.36267 2.55463 2.81893 3.40292 3.47542 3.75545 3.95354 4.06954 4.18005 4.20805 4.44443 4.70700 4.78624 4.81101 4.84803 4.94686 5.13035 5.18971 5.26685 5.42388 5.47713 5.69644 5.82398 6.05034 6.40723 6.59276 7.02477 7.20482 7.74990 8.69267 9.39214 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021436 B = 0.008052 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.895278 B = 3476.389777 C = 4575.864513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.000 4.000 3 H 0.193 0.807 4 C 0.246 3.754 5 N -0.474 5.474 6 C 0.519 3.481 7 O -0.589 6.589 8 N -0.697 5.697 9 C 0.130 3.870 10 C 0.136 3.864 11 H 0.079 0.921 12 C -0.135 4.135 13 C 0.148 3.852 14 N -0.629 5.629 15 C -0.207 4.207 16 H 0.099 0.901 17 C -0.075 4.075 18 N -0.959 5.959 19 Si 0.962 3.038 20 H -0.285 1.285 21 H -0.310 1.310 22 H -0.264 1.264 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.104 0.896 26 H 0.417 0.583 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.034 0.966 33 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 7.655 6.481 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 H 0.209 0.791 4 C -0.072 4.072 5 N -0.150 5.150 6 C 0.304 3.696 7 O -0.470 6.470 8 N -0.348 5.348 9 C 0.005 3.995 10 C 0.030 3.970 11 H 0.096 0.904 12 C -0.173 4.173 13 C 0.022 3.978 14 N -0.356 5.356 15 C -0.335 4.335 16 H 0.116 0.884 17 C -0.267 4.267 18 N -0.609 5.609 19 Si 0.792 3.208 20 H -0.212 1.212 21 H -0.238 1.238 22 H -0.189 1.189 23 H 0.118 0.882 24 H 0.068 0.932 25 H 0.122 0.878 26 H 0.254 0.746 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.444 6.105 8.015 12.528 hybrid contribution -1.614 0.071 -0.373 1.658 sum 5.831 6.176 7.643 11.426 Atomic orbital electron populations 1.21898 0.88188 1.03825 1.06482 1.19101 0.99552 1.01554 0.82178 0.79058 1.28764 0.92096 0.92576 0.93809 1.81159 1.09929 1.09602 1.14307 1.20489 0.79783 0.84091 0.85244 1.90744 1.40553 1.28323 1.87350 1.45759 1.52400 1.32025 1.04599 1.21588 0.98654 0.95744 0.83469 1.22669 0.83848 0.97749 0.92739 0.90363 1.23574 0.97040 1.00491 0.96219 1.22197 0.91552 0.97226 0.86788 1.46462 1.02884 1.82583 1.03633 1.19436 0.84657 1.38431 0.90992 0.88368 1.25517 1.00463 1.04112 0.96638 1.70011 1.24291 1.57344 1.09253 0.85297 0.80101 0.76989 0.78376 1.21205 1.23771 1.18854 0.88213 0.93189 0.87750 0.74596 0.89974 0.94047 0.88921 0.90719 0.95906 0.94744 0.94927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.04 71.98 0.65 -1.59 16 2 C 0.00 0.00 3.10 -13.34 -0.04 -0.04 16 3 H 0.19 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.25 6.28 13.88 89.44 1.24 7.52 16 5 N -0.47 -15.06 18.54 20.01 0.37 -14.69 16 6 C 0.52 13.72 7.14 87.66 0.63 14.35 16 7 O -0.59 -21.59 16.03 -3.01 -0.05 -21.64 16 8 N -0.70 -17.58 5.24 -463.07 -2.43 -20.01 16 9 C 0.13 3.89 5.54 86.38 0.48 4.37 16 10 C 0.14 4.32 4.32 45.09 0.20 4.51 16 11 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 12 C -0.13 -4.26 7.86 31.25 0.25 -4.01 16 13 C 0.15 6.38 7.52 86.44 0.65 7.03 16 14 N -0.63 -27.65 3.59 -690.90 -2.48 -30.13 16 15 C -0.21 -10.02 10.51 84.03 0.88 -9.14 16 16 H 0.10 4.25 7.49 -2.91 -0.02 4.23 16 17 C -0.08 -3.99 5.50 84.86 0.47 -3.52 16 18 N -0.96 -55.63 11.40 21.65 0.25 -55.38 16 19 Si 0.96 42.83 29.55 68.60 2.03 44.86 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 H 0.10 1.37 7.56 -2.39 -0.02 1.36 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.42 8.76 7.77 -92.71 -0.72 8.04 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 31 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.03 1.74 7.17 -2.39 -0.02 1.72 16 33 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -73.35 291.63 3.49 -69.86 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.40 Total: 7.65 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 5.40 Total: 19.47 kcal Atomic # 7 Polarization: -115.92 SS G_CDS: -4.29 Total: -120.21 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -73.35 3.49 -69.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276808668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.282 kcal (2) G-P(sol) polarization free energy of solvation -73.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds