Wall clock time and date at job start Thu Apr 9 2020 12:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.47203 * 109.46684 * 119.99785 * 2 1 3 5 5 N 2.60800 * 109.46794 * 119.99728 * 2 1 3 6 6 C 1.50697 * 109.47102 * 239.99555 * 2 1 3 7 7 O 1.21280 * 119.99838 * 240.00312 * 6 2 1 8 8 N 1.34780 * 119.99998 * 60.00694 * 6 2 1 9 9 C 1.46500 * 119.99871 * 179.97438 * 8 6 2 10 10 C 1.53002 * 109.46786 * 179.97438 * 9 8 6 11 11 H 1.08997 * 112.78530 * 303.72872 * 10 9 8 12 12 C 1.53499 * 113.46472 * 172.93553 * 10 9 8 13 13 C 1.53749 * 83.25991 * 218.98716 * 12 10 9 14 14 N 1.47072 * 113.46180 * 74.50654 * 10 9 8 15 15 C 1.36931 * 136.06174 * 321.86155 * 14 10 9 16 16 H 1.08002 * 120.00103 * 0.02562 * 15 14 10 17 17 C 1.38812 * 120.00429 * 180.02562 * 15 14 10 18 18 N 1.31624 * 119.99535 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00484 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00576 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00326 * 19 17 15 22 22 H 1.48498 * 109.47210 * 150.00037 * 19 17 15 23 23 H 1.09001 * 109.47586 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47535 * 300.00630 * 1 2 3 25 25 H 1.09003 * 109.47057 * 60.00110 * 1 2 3 26 26 H 0.97001 * 119.99969 * 359.97438 * 8 6 2 27 27 H 1.09001 * 109.46704 * 59.99925 * 9 8 6 28 28 H 1.08998 * 109.46915 * 299.99782 * 9 8 6 29 29 H 1.09000 * 114.20984 * 332.74702 * 12 10 9 30 30 H 1.09004 * 114.19718 * 105.37227 * 12 10 9 31 31 H 1.09004 * 113.47201 * 271.50865 * 13 12 10 32 32 H 1.09001 * 113.55046 * 140.98942 * 13 12 10 33 33 H 0.97005 * 119.99717 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 1.2020 5 7 2.3992 -1.2293 2.1295 6 6 2.0323 -0.7105 -1.2304 7 8 2.7295 -1.6966 -1.1190 8 7 1.7068 -0.2500 -2.4546 9 6 2.1956 -0.9404 -3.6507 10 6 1.6851 -0.2196 -4.8999 11 1 0.5989 -0.1318 -4.9224 12 6 2.2818 -0.7627 -6.2057 13 6 2.3020 0.7226 -6.6022 14 7 2.3807 1.0478 -5.1700 15 6 2.8776 2.0794 -4.4191 16 1 2.7886 2.0557 -3.3430 17 6 3.4957 3.1556 -5.0407 18 7 3.6037 3.1847 -6.3522 19 14 4.1729 4.5632 -4.0163 20 1 3.1193 5.5935 -3.8328 21 1 4.5992 4.0495 -2.6898 22 1 5.3385 5.1656 -4.7118 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.1489 0.5385 -2.5436 27 1 1.8326 -1.9682 -3.6507 28 1 3.2856 -0.9400 -3.6504 29 1 3.2685 -1.2121 -6.0934 30 1 1.5943 -1.3733 -6.7911 31 1 1.3783 1.0588 -7.0735 32 1 3.1911 1.0118 -7.1625 33 1 4.0353 3.9370 -6.7867 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276808669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:54 Heat of formation + Delta-G solvation = 43.177939 kcal Electronic energy + Delta-G solvation = -16635.748406 eV Core-core repulsion = 13891.596530 eV Total energy + Delta-G solvation = -2744.151876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90099 -38.24435 -36.52949 -34.32989 -33.20725 -32.25040 -28.15140 -27.64804 -25.29753 -23.53425 -22.27606 -20.68531 -19.37188 -18.06734 -17.24081 -16.52661 -15.68180 -15.33847 -14.97836 -14.29434 -14.10383 -13.77876 -13.36240 -13.23778 -12.93459 -12.72228 -12.37941 -12.02789 -11.91945 -11.61525 -11.51312 -11.17905 -11.04845 -10.81848 -10.64232 -10.08080 -9.89205 -9.76178 -9.29467 -8.87782 -8.71791 -6.97062 -5.83585 -3.16744 2.53428 2.60867 2.82947 3.32620 3.37531 3.40824 3.46092 3.79601 4.36422 4.70199 4.71387 4.93211 5.14143 5.31665 5.36109 5.47141 5.51199 5.64718 5.79891 5.84733 6.02449 6.25766 6.33667 6.53794 6.62414 6.75058 7.15837 7.32671 7.47242 7.51539 7.71099 7.90503 8.33042 8.95194 9.63342 10.55855 11.33449 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.021450 B = 0.007521 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.038068 B = 3721.933527 C = 4634.765109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.017 4.017 3 H 0.142 0.858 4 C 0.229 3.771 5 N -0.423 5.423 6 C 0.519 3.481 7 O -0.541 6.541 8 N -0.704 5.704 9 C 0.121 3.879 10 C 0.127 3.873 11 H 0.050 0.950 12 C -0.161 4.161 13 C 0.151 3.849 14 N -0.601 5.601 15 C -0.217 4.217 16 H 0.081 0.919 17 C -0.006 4.006 18 N -0.917 5.917 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.280 1.280 22 H -0.290 1.290 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.406 0.594 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.072 0.928 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -4.240 5.239 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 H 0.159 0.841 4 C -0.090 4.090 5 N -0.098 5.098 6 C 0.302 3.698 7 O -0.418 6.418 8 N -0.354 5.354 9 C -0.003 4.003 10 C 0.019 3.981 11 H 0.067 0.933 12 C -0.200 4.200 13 C 0.025 3.975 14 N -0.327 5.327 15 C -0.344 4.344 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.563 5.563 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.206 1.206 22 H -0.216 1.216 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.241 0.759 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.928 -5.422 6.755 11.091 hybrid contribution -0.052 1.587 0.027 1.589 sum -6.980 -3.835 6.781 10.460 Atomic orbital electron populations 1.21786 0.89723 1.04061 1.04440 1.18910 0.98732 1.00546 0.85921 0.84076 1.28141 0.93464 0.93592 0.93812 1.81145 1.07982 1.08269 1.12394 1.19871 0.80867 0.84745 0.84299 1.90752 1.37923 1.26478 1.86656 1.45868 1.52650 1.31827 1.05097 1.21885 1.00215 0.95033 0.83208 1.22425 0.95693 0.88025 0.91927 0.93310 1.23708 1.00462 0.98923 0.96935 1.22088 0.99761 0.87692 0.87949 1.45701 1.64780 1.19436 1.02827 1.18831 1.30284 0.95881 0.89439 0.90127 1.24786 1.01272 0.98495 0.95758 1.69826 1.47869 1.31542 1.07106 0.86189 0.78451 0.82396 0.79137 1.21590 1.20588 1.21641 0.91168 0.90463 0.89669 0.75865 0.92014 0.90844 0.90186 0.92333 0.95692 0.90933 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.04 37.16 0.34 -0.70 16 2 C -0.02 -0.18 3.10 -94.56 -0.29 -0.47 16 3 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.23 3.18 13.88 -20.76 -0.29 2.89 16 5 N -0.42 -6.93 18.54 42.15 0.78 -6.15 16 6 C 0.52 7.61 7.14 -10.99 -0.08 7.53 16 7 O -0.54 -10.29 16.03 5.56 0.09 -10.20 16 8 N -0.70 -10.09 5.23 -60.29 -0.32 -10.41 16 9 C 0.12 1.97 5.52 -4.04 -0.02 1.95 16 10 C 0.13 2.22 4.10 -72.39 -0.30 1.92 16 11 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.16 -2.74 8.04 -26.08 -0.21 -2.95 16 13 C 0.15 3.26 7.41 -8.37 -0.06 3.20 16 14 N -0.60 -13.66 3.65 -176.82 -0.65 -14.30 16 15 C -0.22 -5.44 10.55 -15.06 -0.16 -5.60 16 16 H 0.08 1.88 7.50 -52.49 -0.39 1.48 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 18 N -0.92 -25.94 11.50 55.49 0.64 -25.30 16 19 Si 0.91 20.93 29.55 -169.99 -5.02 15.90 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.51 7.56 -51.93 -0.39 0.12 16 26 H 0.41 5.19 7.79 -40.82 -0.32 4.87 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.78 7.11 -51.93 -0.37 1.41 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 291.64 15.07 4.39 4.39 Total: -1.00 -32.65 291.64 -5.66 -38.31 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.41 Total: 0.24 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.17 Total: 7.51 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.46 Total: -56.16 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.65 -5.66 -38.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276808669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.486 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds