Wall clock time and date at job start Thu Apr 9 2020 12:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.46519 * 60.00292 * 15 13 12 17 17 C 1.52998 * 109.47239 * 300.00289 * 15 13 12 18 18 N 1.46502 * 109.47167 * 179.97438 * 15 13 12 19 19 C 1.36881 * 126.39599 * 239.99721 * 18 15 13 20 20 C 1.34673 * 106.81630 * 180.02562 * 19 18 15 21 21 N 1.34126 * 108.01907 * 0.02562 * 20 19 18 22 22 C 1.30501 * 109.25480 * 359.72681 * 21 20 19 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 28 28 H 1.08998 * 109.46853 * 299.99540 * 17 15 13 29 29 H 1.08997 * 109.47149 * 59.99263 * 17 15 13 30 30 H 1.09000 * 109.46684 * 179.97438 * 17 15 13 31 31 H 1.08002 * 126.59277 * 0.04934 * 19 18 15 32 32 H 1.07998 * 125.99197 * 180.02562 * 20 19 18 33 33 H 1.08004 * 125.64940 * 180.28530 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 1 3.6481 -1.1213 3.3984 17 6 1.7046 -1.8825 3.9313 18 7 2.6989 0.2126 4.7090 19 6 3.8109 0.5637 5.4258 20 6 3.4099 1.4487 6.3584 21 7 2.0890 1.6325 6.2151 22 6 1.6573 0.8994 5.2255 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7093 1.1619 -3.4844 27 1 2.2491 -1.6318 1.1525 28 1 0.7055 -1.4901 4.1205 29 1 1.6678 -2.5829 3.0969 30 1 2.0679 -2.3967 4.8211 31 1 4.8166 0.2010 5.2728 32 1 4.0412 1.9266 7.0928 33 1 0.6358 0.8487 4.8786 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318436909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:09 Heat of formation + Delta-G solvation = 23.467016 kcal Electronic energy + Delta-G solvation = -16787.170384 eV Core-core repulsion = 14042.163778 eV Total energy + Delta-G solvation = -2745.006606 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.92770 -39.12525 -35.13999 -34.56322 -32.54172 -30.48320 -29.16548 -28.56685 -25.36951 -24.73354 -21.97821 -21.15436 -20.47973 -19.52313 -17.89264 -16.75752 -15.97018 -15.27107 -15.10731 -14.56879 -14.12984 -14.03411 -13.65450 -13.33115 -13.14445 -12.56954 -12.51818 -12.38512 -11.87500 -11.73680 -11.20494 -11.02980 -10.85435 -10.43321 -10.33449 -9.84449 -9.76533 -9.17430 -9.02913 -8.66508 -8.28959 -8.12185 -6.21694 -4.32213 2.23278 2.81992 3.03165 3.18033 3.25372 3.26990 3.41839 3.80675 4.27069 4.66812 4.72865 4.90010 4.98609 5.10736 5.14265 5.41672 5.43768 5.61359 5.81831 5.85806 6.45769 6.69647 6.82309 6.91637 7.01567 7.25161 7.30850 7.42465 7.56933 7.77975 8.03179 8.29819 8.43114 8.62654 8.87094 9.35472 10.84210 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048819 B = 0.005413 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.409862 B = 5171.503102 C = 5275.736976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.699 5.699 13 C 0.490 3.510 14 O -0.534 6.534 15 C 0.109 3.891 16 H 0.120 0.880 17 C -0.156 4.156 18 N -0.439 5.439 19 C -0.063 4.063 20 C -0.032 4.032 21 N -0.505 5.505 22 C 0.217 3.783 23 H 0.015 0.985 24 H 0.027 0.973 25 H 0.091 0.909 26 H 0.266 0.734 27 H 0.390 0.610 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -7.024 10.937 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.348 5.348 13 C 0.272 3.728 14 O -0.412 6.412 15 C 0.001 3.999 16 H 0.138 0.862 17 C -0.214 4.214 18 N -0.121 5.121 19 C -0.195 4.195 20 C -0.180 4.180 21 N -0.224 5.224 22 C -0.066 4.066 23 H 0.034 0.966 24 H 0.047 0.953 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.223 0.777 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.187 0.813 32 H 0.183 0.817 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.860 -5.615 11.154 12.811 hybrid contribution 1.006 -1.421 -1.534 2.321 sum 3.866 -7.036 9.619 12.529 Atomic orbital electron populations 1.22079 0.98193 0.99213 1.01055 1.18814 0.91177 0.94000 0.79641 0.93296 1.21173 1.32821 1.13373 0.90214 0.92018 1.24890 0.94724 0.94898 0.99126 1.69892 1.35639 1.22270 1.24084 0.86424 0.79152 0.79279 0.82107 1.20467 1.20998 1.19844 1.46510 1.64554 1.13562 1.10131 1.20298 0.79937 0.87841 0.84766 1.90752 1.50418 1.15449 1.84533 1.21458 1.03328 0.89593 0.85475 0.86212 1.22102 0.99509 0.96402 1.03394 1.45193 1.08668 1.33509 1.24761 1.22639 0.92379 1.05613 0.98884 1.22198 0.92349 1.01514 1.01949 1.70306 1.11202 1.22766 1.18085 1.24764 0.94831 0.93655 0.93390 0.96631 0.95335 0.89012 0.92426 0.77734 0.91031 0.89605 0.90925 0.81261 0.81693 0.78605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.26 37.16 0.34 -3.14 16 2 C 0.26 6.41 2.56 -69.08 -0.18 6.23 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.60 8.73 -34.44 -0.30 -13.91 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.24 11.32 55.43 0.63 -23.61 16 8 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 N -0.70 -13.16 4.96 -54.93 -0.27 -13.44 16 13 C 0.49 8.91 7.09 -10.99 -0.08 8.83 16 14 O -0.53 -12.28 15.13 5.56 0.08 -12.19 16 15 C 0.11 1.42 3.39 -69.08 -0.23 1.18 16 16 H 0.12 1.25 8.08 -51.93 -0.42 0.83 16 17 C -0.16 -1.55 9.14 37.16 0.34 -1.21 16 18 N -0.44 -6.43 2.40 -112.69 -0.27 -6.70 16 19 C -0.06 -0.84 11.54 -16.56 -0.19 -1.03 16 20 C -0.03 -0.47 11.87 -17.81 -0.21 -0.68 16 21 N -0.51 -8.69 11.25 -14.67 -0.17 -8.86 16 22 C 0.22 3.52 10.75 -90.38 -0.97 2.55 16 23 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.39 6.07 7.96 -40.82 -0.32 5.74 16 28 H 0.07 0.76 7.95 -51.93 -0.41 0.35 16 29 H 0.09 0.74 7.56 -51.93 -0.39 0.34 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.17 1.91 8.06 -52.49 -0.42 1.48 16 33 H 0.20 2.94 8.06 -52.48 -0.42 2.52 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -32.00 285.41 -6.63 -38.63 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.34 Total: 6.43 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.57 Total: 0.49 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.08 Total: -52.61 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.00 -6.63 -38.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318436909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.095 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds