Wall clock time and date at job start Thu Apr 9 2020 12:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.46519 * 60.00292 * 15 13 12 17 17 C 1.52998 * 109.47239 * 300.00289 * 15 13 12 18 18 N 1.46502 * 109.47167 * 179.97438 * 15 13 12 19 19 C 1.36881 * 126.39599 * 239.99721 * 18 15 13 20 20 C 1.34673 * 106.81630 * 180.02562 * 19 18 15 21 21 N 1.34126 * 108.01907 * 0.02562 * 20 19 18 22 22 C 1.30501 * 109.25480 * 359.72681 * 21 20 19 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 28 28 H 1.08998 * 109.46853 * 299.99540 * 17 15 13 29 29 H 1.08997 * 109.47149 * 59.99263 * 17 15 13 30 30 H 1.09000 * 109.46684 * 179.97438 * 17 15 13 31 31 H 1.08002 * 126.59277 * 0.04934 * 19 18 15 32 32 H 1.07998 * 125.99197 * 180.02562 * 20 19 18 33 33 H 1.08004 * 125.64940 * 180.28530 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 1 3.6481 -1.1213 3.3984 17 6 1.7046 -1.8825 3.9313 18 7 2.6989 0.2126 4.7090 19 6 3.8109 0.5637 5.4258 20 6 3.4099 1.4487 6.3584 21 7 2.0890 1.6325 6.2151 22 6 1.6573 0.8994 5.2255 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 0.7093 1.1619 -3.4844 27 1 2.2491 -1.6318 1.1525 28 1 0.7055 -1.4901 4.1205 29 1 1.6678 -2.5829 3.0969 30 1 2.0679 -2.3967 4.8211 31 1 4.8166 0.2010 5.2728 32 1 4.0412 1.9266 7.0928 33 1 0.6358 0.8487 4.8786 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318436909.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:08 Heat of formation + Delta-G solvation = 2.146093 kcal Electronic energy + Delta-G solvation = -16788.094928 eV Core-core repulsion = 14042.163778 eV Total energy + Delta-G solvation = -2745.931150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.05786 -40.63558 -36.86280 -35.82108 -34.35819 -31.77671 -30.56497 -29.86285 -27.35620 -25.85016 -23.52255 -22.27278 -21.92240 -21.02900 -19.34383 -18.09343 -17.64457 -16.99619 -16.33113 -16.07882 -15.60400 -15.24937 -14.81608 -14.64125 -14.40449 -14.30874 -13.85864 -13.42597 -13.25767 -13.02622 -12.91042 -12.77784 -12.68267 -12.30108 -12.15110 -11.17313 -11.12545 -10.93569 -10.63837 -10.39121 -9.84882 -9.38150 -8.18930 -6.36958 1.09944 1.45591 1.46488 1.56637 1.60107 1.76139 2.26195 2.33643 2.53712 3.12260 3.61548 3.80209 3.82905 3.87054 4.02864 4.55895 4.64928 4.67946 4.73887 4.79019 4.89367 5.06530 5.08812 5.37312 5.39454 5.55523 5.64669 5.84696 5.88747 6.07252 6.21339 6.70588 6.83474 7.16468 7.28864 7.44553 8.87268 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048819 B = 0.005413 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.409862 B = 5171.503102 C = 5275.736976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H -0.005 1.005 4 C -0.545 4.545 5 H 0.078 0.922 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.290 1.290 11 H -0.262 1.262 12 N -0.691 5.691 13 C 0.487 3.513 14 O -0.588 6.588 15 C 0.122 3.878 16 H 0.158 0.842 17 C -0.151 4.151 18 N -0.442 5.442 19 C -0.052 4.052 20 C -0.056 4.056 21 N -0.538 5.538 22 C 0.193 3.807 23 H 0.011 0.989 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.265 0.735 27 H 0.410 0.590 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.210 0.790 32 H 0.189 0.811 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 -9.670 11.265 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.097 0.903 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.216 1.216 11 H -0.186 1.186 12 N -0.341 5.341 13 C 0.272 3.728 14 O -0.469 6.469 15 C 0.015 3.985 16 H 0.176 0.824 17 C -0.208 4.208 18 N -0.125 5.125 19 C -0.184 4.184 20 C -0.203 4.203 21 N -0.257 5.257 22 C -0.090 4.090 23 H 0.030 0.970 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.246 0.754 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.227 0.773 32 H 0.206 0.794 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.582 -8.317 11.510 14.921 hybrid contribution 0.495 -0.540 -1.586 1.747 sum 5.077 -8.857 9.924 14.237 Atomic orbital electron populations 1.21892 0.98138 0.99708 0.99497 1.18352 0.91190 0.91800 0.81819 0.98713 1.21542 1.32635 1.13638 0.90541 0.90346 1.25809 0.94865 0.95513 1.02449 1.70057 1.37073 1.23973 1.24631 0.85335 0.79078 0.77962 0.77899 1.19609 1.21649 1.18564 1.46154 1.64503 1.14352 1.09082 1.21219 0.78466 0.87279 0.85842 1.90737 1.52485 1.18154 1.85505 1.21567 1.05754 0.89052 0.82149 0.82429 1.22141 0.98122 0.95337 1.05230 1.45365 1.08632 1.33564 1.24895 1.23302 0.93381 1.04247 0.97496 1.22737 0.91751 1.02439 1.03334 1.70254 1.12972 1.23539 1.18933 1.24791 0.95471 0.94703 0.94004 0.96978 0.93590 0.91770 0.92604 0.75382 0.92246 0.87700 0.88492 0.77306 0.79416 0.78873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 9.26 71.98 0.67 -5.79 16 2 C 0.27 13.31 2.56 44.25 0.11 13.42 16 3 H -0.01 -0.30 7.58 -2.39 -0.02 -0.32 16 4 C -0.55 -27.22 8.73 25.60 0.22 -27.00 16 5 H 0.08 3.57 7.74 -2.91 -0.02 3.54 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -51.64 11.32 21.45 0.24 -51.40 16 8 Si 0.97 40.34 29.54 68.60 2.03 42.37 16 9 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 12 N -0.69 -25.20 4.96 -446.10 -2.21 -27.42 16 13 C 0.49 17.30 7.09 87.66 0.62 17.92 16 14 O -0.59 -27.66 15.13 -3.02 -0.05 -27.71 16 15 C 0.12 2.80 3.39 44.25 0.15 2.95 16 16 H 0.16 2.51 8.08 -2.39 -0.02 2.49 16 17 C -0.15 -2.48 9.14 71.98 0.66 -1.82 16 18 N -0.44 -12.10 2.40 -510.45 -1.23 -13.32 16 19 C -0.05 -1.24 11.54 83.09 0.96 -0.29 16 20 C -0.06 -1.55 11.87 83.52 0.99 -0.56 16 21 N -0.54 -18.47 11.25 -200.31 -2.25 -20.73 16 22 C 0.19 6.27 10.75 180.26 1.94 8.21 16 23 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.06 3.47 6.07 -2.38 -0.01 3.45 16 26 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.41 11.60 7.96 -92.71 -0.74 10.86 16 28 H 0.06 1.15 7.95 -2.39 -0.02 1.13 16 29 H 0.10 1.35 7.56 -2.39 -0.02 1.33 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.21 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.19 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.19 6.06 8.06 -2.91 -0.02 6.04 16 Total: -1.00 -72.17 285.41 3.67 -68.50 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.37 Total: 21.49 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.77 Total: 8.21 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -5.45 Total: -112.86 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -72.17 3.67 -68.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318436909.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.644 kcal (2) G-P(sol) polarization free energy of solvation -72.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds