Wall clock time and date at job start Thu Apr 9 2020 12:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46870 * 2 1 4 4 C 1.50693 * 109.47182 * 240.00658 * 2 1 3 5 5 O 1.21281 * 120.00095 * 239.99756 * 4 2 1 6 6 N 1.34780 * 120.00182 * 59.99417 * 4 2 1 7 7 C 1.46500 * 119.99910 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.47129 * 324.99754 * 7 6 4 9 9 C 1.52997 * 109.47473 * 85.00011 * 7 6 4 10 10 C 1.50699 * 109.46939 * 205.00060 * 7 6 4 11 11 H 1.08003 * 120.00271 * 359.97438 * 10 7 6 12 12 C 1.37879 * 120.00161 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00079 * 179.97438 * 12 10 7 14 14 Si 1.86795 * 119.99984 * 0.02562 * 12 10 7 15 15 H 1.48498 * 109.47308 * 89.99475 * 14 12 10 16 16 H 1.48501 * 109.47369 * 209.99550 * 14 12 10 17 17 H 1.48502 * 109.47235 * 329.99718 * 14 12 10 18 18 N 1.46499 * 109.47347 * 120.00285 * 2 1 3 19 19 C 1.36888 * 126.39509 * 239.71363 * 18 2 1 20 20 C 1.34666 * 106.81364 * 179.84139 * 19 18 2 21 21 N 1.34128 * 108.02160 * 0.42523 * 20 19 18 22 22 C 1.30500 * 109.25459 * 359.72887 * 21 20 19 23 23 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99650 * 1 2 3 25 25 H 1.08997 * 109.47722 * 59.99451 * 1 2 3 26 26 H 0.96994 * 120.00115 * 0.02562 * 6 4 2 27 27 H 1.09002 * 109.47153 * 59.99757 * 9 7 6 28 28 H 1.09001 * 109.46832 * 299.99948 * 9 7 6 29 29 H 1.09004 * 109.47261 * 179.97438 * 9 7 6 30 30 H 0.96999 * 119.99874 * 180.02562 * 13 12 10 31 31 H 1.07999 * 126.59474 * 359.97438 * 19 18 2 32 32 H 1.07998 * 125.98852 * 180.11722 * 20 19 18 33 33 H 1.08001 * 125.64359 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 8 2.7296 -1.6963 -1.1193 6 7 1.7066 -0.2497 -2.4546 7 6 2.1945 -0.9406 -3.6508 8 1 3.1937 -1.3330 -3.4616 9 6 1.2501 -2.0942 -3.9945 10 6 2.2453 0.0277 -4.8044 11 1 1.9439 1.0549 -4.6611 12 6 2.6767 -0.3976 -6.0430 13 7 2.7205 0.4473 -7.0499 14 14 3.1973 -2.1743 -6.2913 15 1 2.0203 -2.9827 -6.6989 16 1 4.2356 -2.2424 -7.3508 17 1 3.7501 -2.7102 -5.0214 18 7 2.0183 -0.6907 1.1961 19 6 2.8130 -0.1569 2.1746 20 6 3.0185 -1.1295 3.0831 21 7 2.3748 -2.2298 2.6659 22 6 1.7735 -1.9743 1.5363 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.1492 0.5391 -2.5435 27 1 0.2510 -1.7017 -4.1837 28 1 1.2134 -2.7945 -3.1600 29 1 1.6130 -2.6079 -4.8848 30 1 3.0236 0.1479 -7.9214 31 1 3.1991 0.8510 2.2120 32 1 3.6035 -1.0407 3.9866 33 1 1.1789 -2.6739 0.9675 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318436910.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:12 Heat of formation + Delta-G solvation = 31.902393 kcal Electronic energy + Delta-G solvation = -16859.537634 eV Core-core repulsion = 14114.896814 eV Total energy + Delta-G solvation = -2744.640820 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.00780 -39.32059 -35.36340 -34.68931 -32.54667 -30.79155 -29.63315 -28.90598 -25.33752 -24.85129 -22.11765 -21.22761 -20.54900 -19.71752 -17.96364 -16.95756 -16.20527 -15.52904 -15.19467 -14.81613 -14.18951 -14.01083 -13.72400 -13.45073 -13.24346 -13.07005 -12.56080 -12.48544 -12.30232 -11.97816 -11.87054 -11.37228 -10.91683 -10.29377 -9.99922 -9.84792 -9.72900 -9.36211 -9.14664 -8.87131 -8.38369 -8.35227 -6.30657 -4.34451 2.15428 2.72662 2.86264 3.16458 3.29516 3.32980 3.34905 3.65019 4.23016 4.57367 4.64522 4.81737 4.89818 5.01241 5.04219 5.35322 5.35603 5.54601 5.75311 5.79343 6.18298 6.23998 6.38014 6.42750 6.71606 6.84698 7.00042 7.09917 7.27278 7.36813 7.95003 8.22680 8.33277 8.57181 8.69688 9.29213 10.81262 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.044376 B = 0.005979 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.822511 B = 4681.717383 C = 4885.647345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 H 0.123 0.877 4 C 0.492 3.508 5 O -0.536 6.536 6 N -0.692 5.692 7 C 0.237 3.763 8 H 0.049 0.951 9 C -0.161 4.161 10 C -0.539 4.539 11 H 0.081 0.919 12 C 0.080 3.920 13 N -0.890 5.890 14 Si 0.885 3.115 15 H -0.275 1.275 16 H -0.293 1.293 17 H -0.262 1.262 18 N -0.440 5.440 19 C -0.061 4.061 20 C -0.032 4.032 21 N -0.505 5.505 22 C 0.215 3.785 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.397 0.603 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.269 0.731 31 H 0.171 0.829 32 H 0.166 0.834 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 1.334 13.420 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.003 3.997 3 H 0.141 0.859 4 C 0.274 3.726 5 O -0.413 6.413 6 N -0.340 5.340 7 C 0.134 3.866 8 H 0.067 0.933 9 C -0.219 4.219 10 C -0.577 4.577 11 H 0.099 0.901 12 C -0.124 4.124 13 N -0.526 5.526 14 Si 0.714 3.286 15 H -0.202 1.202 16 H -0.220 1.220 17 H -0.187 1.187 18 N -0.122 5.122 19 C -0.193 4.193 20 C -0.180 4.180 21 N -0.223 5.223 22 C -0.068 4.068 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.231 0.769 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.188 0.812 32 H 0.184 0.816 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.520 -0.022 13.554 14.288 hybrid contribution 0.104 0.362 -0.932 1.005 sum -4.416 0.340 12.622 13.376 Atomic orbital electron populations 1.22117 0.91020 1.04230 1.04143 1.21418 0.96890 0.97828 0.83553 0.85916 1.20363 0.81713 0.85576 0.84935 1.90750 1.37903 1.26264 1.86352 1.46156 1.51587 1.31032 1.05273 1.19160 0.93975 0.91057 0.82375 0.93298 1.22450 1.01077 0.98893 0.99522 1.20990 1.46744 0.97295 0.92625 0.90129 1.24820 0.94309 0.97725 0.95552 1.69857 1.46105 1.35079 1.01582 0.86884 0.78287 0.85048 0.78350 1.20194 1.22011 1.18705 1.45192 1.38090 1.11680 1.17272 1.22661 1.02763 1.01500 0.92420 1.22207 1.04713 0.89690 1.01345 1.70307 1.13085 1.27675 1.11219 1.24754 1.02593 0.84815 0.94637 0.91034 0.90754 0.89458 0.76942 0.92674 0.94538 0.93279 0.92147 0.81161 0.81641 0.78635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.14 37.16 0.34 -1.10 16 2 C 0.11 1.34 3.39 -69.09 -0.23 1.11 16 3 H 0.12 1.19 8.08 -51.93 -0.42 0.78 16 4 C 0.49 8.36 7.09 -10.99 -0.08 8.28 16 5 O -0.54 -11.48 15.14 5.56 0.08 -11.40 16 6 N -0.69 -12.28 4.96 -54.93 -0.27 -12.56 16 7 C 0.24 5.35 2.15 -69.08 -0.15 5.20 16 8 H 0.05 1.24 6.63 -51.93 -0.34 0.90 16 9 C -0.16 -3.41 8.96 37.16 0.33 -3.07 16 10 C -0.54 -13.90 9.31 -34.44 -0.32 -14.22 16 11 H 0.08 2.17 7.98 -52.48 -0.42 1.75 16 12 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 13 N -0.89 -25.62 13.96 55.43 0.77 -24.84 16 14 Si 0.88 21.23 24.37 -169.99 -4.14 17.09 16 15 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 18 N -0.44 -6.08 2.40 -112.70 -0.27 -6.35 16 19 C -0.06 -0.78 11.54 -16.56 -0.19 -0.97 16 20 C -0.03 -0.45 11.87 -17.81 -0.21 -0.66 16 21 N -0.50 -8.32 11.25 -14.67 -0.17 -8.49 16 22 C 0.21 3.30 10.75 -90.38 -0.97 2.33 16 23 H 0.07 0.69 7.95 -51.93 -0.41 0.28 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.69 7.56 -51.93 -0.39 0.29 16 26 H 0.40 5.91 7.96 -40.82 -0.32 5.59 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 30 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.20 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 278.59 15.07 4.20 4.20 Total: -1.00 -32.90 278.59 -5.58 -38.48 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.20 Total: 4.88 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.58 Total: -1.01 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.07 Total: -52.24 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.14 Total: 17.09 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.90 -5.58 -38.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318436910.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.384 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds