Wall clock time and date at job start Thu Apr 9 2020 12:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47219 * 2 1 4 4 N 1.40042 * 125.97019 * 270.15684 * 3 2 1 5 5 C 1.30791 * 108.42663 * 180.28983 * 4 3 2 6 6 C 1.50700 * 125.89613 * 179.76558 * 5 4 3 7 7 C 1.40410 * 108.20718 * 359.74422 * 5 4 3 8 8 N 1.40163 * 126.14534 * 179.97438 * 7 5 4 9 9 C 1.34775 * 120.00068 * 285.82850 * 8 7 5 10 10 O 1.21787 * 119.99985 * 4.97649 * 9 8 7 11 11 C 1.41800 * 119.99846 * 184.96925 * 9 8 7 12 12 H 1.07996 * 120.00144 * 0.02562 * 11 9 8 13 13 C 1.40136 * 119.99756 * 180.02562 * 11 9 8 14 14 N 1.30630 * 119.99976 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99796 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46990 * 89.99826 * 15 13 11 17 17 H 1.48498 * 109.46864 * 209.99910 * 15 13 11 18 18 H 1.48498 * 109.47130 * 329.99967 * 15 13 11 19 19 C 1.35175 * 125.97742 * 89.99908 * 3 2 1 20 20 C 1.50702 * 126.19676 * 359.97438 * 19 3 2 21 21 H 1.08995 * 109.47465 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47270 * 300.00345 * 1 2 3 23 23 H 1.09002 * 109.47012 * 59.99687 * 1 2 3 24 24 H 1.08994 * 109.46652 * 239.99793 * 2 1 3 25 25 H 1.08994 * 109.46843 * 120.00084 * 2 1 3 26 26 H 1.09000 * 109.47352 * 278.57219 * 6 5 4 27 27 H 1.09006 * 109.47222 * 38.57068 * 6 5 4 28 28 H 1.08998 * 109.47197 * 158.56896 * 6 5 4 29 29 H 0.97002 * 119.99919 * 105.82752 * 8 7 5 30 30 H 0.97001 * 119.99790 * 180.02562 * 14 13 11 31 31 H 1.08993 * 109.47044 * 269.69174 * 20 19 3 32 32 H 1.08997 * 109.46617 * 149.68772 * 20 19 3 33 33 H 1.09006 * 109.46820 * 29.68921 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2896 2.1577 -1.1334 5 6 2.7123 3.3310 -0.7392 6 6 3.1203 4.4706 -1.6369 7 6 2.7197 3.3457 0.6648 8 7 3.1076 4.4191 1.4784 9 6 4.4129 4.7286 1.6087 10 8 5.2481 4.1351 0.9503 11 6 4.8137 5.7453 2.5122 12 1 4.0730 6.2714 3.0962 13 6 6.1708 6.0675 2.6472 14 7 7.0665 5.4316 1.9404 15 14 6.6988 7.4065 3.8380 16 1 6.9640 6.8073 5.1707 17 1 7.9341 8.0584 3.3337 18 1 5.6182 8.4181 3.9563 19 6 2.2831 2.1299 1.0939 20 6 2.1288 1.6951 2.5286 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8899 26 1 4.1439 4.3158 -1.9782 27 1 2.4527 4.5122 -2.4976 28 1 3.0595 5.4082 -1.0843 29 1 2.4367 4.9392 1.9476 30 1 8.0059 5.6543 2.0342 31 1 1.1246 1.9382 2.8758 32 1 2.8623 2.2134 3.1461 33 1 2.2879 0.6192 2.6013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320505963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:31 Heat of formation + Delta-G solvation = 28.690751 kcal Electronic energy + Delta-G solvation = -16925.803306 eV Core-core repulsion = 14181.023218 eV Total energy + Delta-G solvation = -2744.780088 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.70074 -37.14777 -34.56037 -33.08014 -32.22791 -31.39702 -29.62825 -27.18087 -26.69547 -25.47300 -22.76960 -20.67500 -18.89538 -18.84903 -17.26467 -16.28309 -15.35414 -15.06855 -14.69574 -13.99385 -13.84644 -13.37616 -12.92351 -12.78972 -12.71362 -12.38316 -12.17528 -11.92410 -11.80169 -11.50274 -11.33761 -11.16864 -11.14170 -10.98702 -10.44578 -10.22029 -10.06433 -8.86184 -8.42915 -7.93162 -7.53958 -7.16774 -6.18199 -4.70179 2.40405 2.92588 3.13488 3.20837 3.24175 3.44902 4.11965 4.58234 4.71127 5.03485 5.12123 5.13013 5.22634 5.44580 5.50220 5.59627 5.76671 5.82275 5.89031 5.98689 6.02133 6.24982 6.31473 6.56171 6.68845 6.77230 7.21981 7.40741 7.58183 8.09121 8.24407 8.38271 8.57354 8.99798 9.65488 10.60251 10.91288 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041132 B = 0.006445 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.573028 B = 4343.225708 C = 4673.484615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.137 3.863 3 N -0.378 5.378 4 N -0.309 5.309 5 C 0.084 3.916 6 C -0.060 4.060 7 C 0.039 3.961 8 N -0.695 5.695 9 C 0.558 3.442 10 O -0.574 6.574 11 C -0.545 4.545 12 H 0.066 0.934 13 C 0.090 3.910 14 N -0.755 5.755 15 Si 0.907 3.093 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 C 0.053 3.947 20 C -0.079 4.079 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.382 0.618 30 H 0.269 0.731 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 -6.263 0.127 12.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.163 5.163 4 N -0.132 5.132 5 C -0.084 4.084 6 C -0.119 4.119 7 C -0.065 4.065 8 N -0.348 5.348 9 C 0.365 3.635 10 O -0.456 6.456 11 C -0.581 4.581 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.383 5.383 15 Si 0.731 3.269 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.074 4.074 20 C -0.138 4.138 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.216 0.784 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.472 -7.590 -1.373 13.006 hybrid contribution 0.152 1.273 1.549 2.011 sum -10.319 -6.317 0.176 12.101 Atomic orbital electron populations 1.22184 0.94957 1.02374 1.03083 1.21447 0.94600 0.78724 1.03752 1.47956 1.53595 1.11330 1.03369 1.77096 1.24624 1.03834 1.07655 1.22585 0.97288 0.93938 0.94591 1.20014 1.01206 0.94040 0.96640 1.17112 1.09567 0.90414 0.89431 1.43267 1.08909 1.31739 1.50852 1.16969 0.79063 0.84092 0.83408 1.90652 1.49868 1.55859 1.49230 1.20014 0.92867 1.20634 1.24627 0.91569 1.25716 0.96466 0.95919 0.95023 1.70039 1.01567 1.34387 1.32333 0.86393 0.78604 0.81206 0.80671 1.19746 1.20454 1.18814 1.21090 1.03921 0.92096 0.90306 1.20282 1.02783 1.00976 0.89745 0.91056 0.92160 0.91785 0.89260 0.89555 0.90619 0.92199 0.90625 0.78425 0.92057 0.91177 0.89495 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 37.16 0.38 -1.32 16 2 C 0.14 1.71 6.96 -4.04 -0.03 1.69 16 3 N -0.38 -6.80 3.62 -56.89 -0.21 -7.01 16 4 N -0.31 -6.41 12.56 33.77 0.42 -5.98 16 5 C 0.08 1.84 7.21 -82.22 -0.59 1.25 16 6 C -0.06 -1.19 10.43 36.01 0.38 -0.82 16 7 C 0.04 0.88 5.72 -83.99 -0.48 0.40 16 8 N -0.70 -16.19 5.33 -12.61 -0.07 -16.26 16 9 C 0.56 15.87 7.54 -14.90 -0.11 15.75 16 10 O -0.57 -18.76 14.84 5.11 0.08 -18.69 16 11 C -0.55 -15.17 9.31 -37.51 -0.35 -15.52 16 12 H 0.07 1.68 7.85 -52.49 -0.41 1.26 16 13 C 0.09 2.49 5.50 -17.35 -0.10 2.39 16 14 N -0.76 -22.48 11.73 55.55 0.65 -21.83 16 15 Si 0.91 19.81 29.56 -169.99 -5.02 14.79 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 19 C 0.05 1.02 6.97 -81.88 -0.57 0.45 16 20 C -0.08 -1.20 10.08 36.01 0.36 -0.84 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.09 0.91 7.05 -51.93 -0.37 0.55 16 26 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.52 8.13 -51.93 -0.42 1.10 16 29 H 0.38 7.77 8.79 -40.82 -0.36 7.41 16 30 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.06 0.78 7.08 -51.93 -0.37 0.41 16 LS Contribution 291.22 15.07 4.39 4.39 Total: -1.00 -35.88 291.22 -5.31 -41.19 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.44 Total: 5.96 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.11 Total: 3.44 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.80 Total: -51.07 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.08 Total: -18.69 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.88 -5.31 -41.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320505963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.881 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds