Wall clock time and date at job start Thu Apr 9 2020 12:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47219 * 2 1 4 4 N 1.40042 * 125.97019 * 270.15684 * 3 2 1 5 5 C 1.30791 * 108.42663 * 180.28983 * 4 3 2 6 6 C 1.50700 * 125.89613 * 179.76558 * 5 4 3 7 7 C 1.40410 * 108.20718 * 359.74422 * 5 4 3 8 8 N 1.40163 * 126.14534 * 179.97438 * 7 5 4 9 9 C 1.34775 * 120.00068 * 285.82850 * 8 7 5 10 10 O 1.21787 * 119.99985 * 4.97649 * 9 8 7 11 11 C 1.41800 * 119.99846 * 184.96925 * 9 8 7 12 12 H 1.07996 * 120.00144 * 0.02562 * 11 9 8 13 13 C 1.40136 * 119.99756 * 180.02562 * 11 9 8 14 14 N 1.30630 * 119.99976 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99796 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46990 * 89.99826 * 15 13 11 17 17 H 1.48498 * 109.46864 * 209.99910 * 15 13 11 18 18 H 1.48498 * 109.47130 * 329.99967 * 15 13 11 19 19 C 1.35175 * 125.97742 * 89.99908 * 3 2 1 20 20 C 1.50702 * 126.19676 * 359.97438 * 19 3 2 21 21 H 1.08995 * 109.47465 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47270 * 300.00345 * 1 2 3 23 23 H 1.09002 * 109.47012 * 59.99687 * 1 2 3 24 24 H 1.08994 * 109.46652 * 239.99793 * 2 1 3 25 25 H 1.08994 * 109.46843 * 120.00084 * 2 1 3 26 26 H 1.09000 * 109.47352 * 278.57219 * 6 5 4 27 27 H 1.09006 * 109.47222 * 38.57068 * 6 5 4 28 28 H 1.08998 * 109.47197 * 158.56896 * 6 5 4 29 29 H 0.97002 * 119.99919 * 105.82752 * 8 7 5 30 30 H 0.97001 * 119.99790 * 180.02562 * 14 13 11 31 31 H 1.08993 * 109.47044 * 269.69174 * 20 19 3 32 32 H 1.08997 * 109.46617 * 149.68772 * 20 19 3 33 33 H 1.09006 * 109.46820 * 29.68921 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2896 2.1577 -1.1334 5 6 2.7123 3.3310 -0.7392 6 6 3.1203 4.4706 -1.6369 7 6 2.7197 3.3457 0.6648 8 7 3.1076 4.4191 1.4784 9 6 4.4129 4.7286 1.6087 10 8 5.2481 4.1351 0.9503 11 6 4.8137 5.7453 2.5122 12 1 4.0730 6.2714 3.0962 13 6 6.1708 6.0675 2.6472 14 7 7.0665 5.4316 1.9404 15 14 6.6988 7.4065 3.8380 16 1 6.9640 6.8073 5.1707 17 1 7.9341 8.0584 3.3337 18 1 5.6182 8.4181 3.9563 19 6 2.2831 2.1299 1.0939 20 6 2.1288 1.6951 2.5286 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8899 26 1 4.1439 4.3158 -1.9782 27 1 2.4527 4.5122 -2.4976 28 1 3.0595 5.4082 -1.0843 29 1 2.4367 4.9392 1.9476 30 1 8.0059 5.6543 2.0342 31 1 1.1246 1.9382 2.8758 32 1 2.8623 2.2134 3.1461 33 1 2.2879 0.6192 2.6013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320505963.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:31 Heat of formation + Delta-G solvation = 2.384475 kcal Electronic energy + Delta-G solvation = -16926.944032 eV Core-core repulsion = 14181.023218 eV Total energy + Delta-G solvation = -2745.920813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.23020 -39.19529 -35.95568 -34.91399 -34.26353 -32.77716 -31.13860 -29.01932 -28.14747 -27.12447 -23.97673 -22.52815 -20.60526 -20.31255 -19.26218 -17.77952 -17.42588 -16.53918 -16.12647 -15.67688 -15.21522 -14.88564 -14.44831 -14.31802 -14.20656 -13.87199 -13.78544 -13.33845 -13.13518 -13.01832 -12.79956 -12.73363 -12.61755 -12.54456 -12.15299 -11.98127 -11.67028 -10.90087 -9.92829 -9.83314 -9.67648 -8.91498 -8.25333 -6.88481 0.89613 1.42874 1.44016 1.58869 1.62133 1.78490 2.28523 2.51917 3.29077 3.69884 3.76762 3.85421 4.08543 4.13854 4.16782 4.37234 4.51932 4.69498 4.70677 4.75995 4.78942 4.92815 5.05031 5.13385 5.22914 5.26035 5.32555 5.58874 6.01767 6.20987 6.30192 6.69548 6.81869 6.87160 7.68477 8.56791 8.80132 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.041132 B = 0.006445 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.573028 B = 4343.225708 C = 4673.484615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 N -0.368 5.368 4 N -0.325 5.325 5 C 0.057 3.943 6 C -0.053 4.053 7 C -0.014 4.014 8 N -0.679 5.679 9 C 0.547 3.453 10 O -0.627 6.627 11 C -0.570 4.570 12 H 0.087 0.913 13 C 0.034 3.966 14 N -0.810 5.810 15 Si 0.997 3.003 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.248 1.248 19 C 0.065 3.935 20 C -0.076 4.076 21 H 0.106 0.894 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.395 0.605 30 H 0.274 0.726 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.531 -6.808 1.826 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 N -0.152 5.152 4 N -0.149 5.149 5 C -0.109 4.109 6 C -0.112 4.112 7 C -0.118 4.118 8 N -0.331 5.331 9 C 0.355 3.645 10 O -0.514 6.514 11 C -0.606 4.606 12 H 0.105 0.895 13 C -0.183 4.183 14 N -0.439 5.439 15 Si 0.816 3.184 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.171 1.171 19 C -0.065 4.065 20 C -0.134 4.134 21 H 0.125 0.875 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.114 0.886 25 H 0.132 0.868 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.230 0.770 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.071 -8.160 0.314 14.574 hybrid contribution 0.525 1.280 0.988 1.700 sum -11.546 -6.880 1.302 13.503 Atomic orbital electron populations 1.22121 0.92686 1.04437 1.02328 1.22031 0.96457 0.75956 1.05478 1.48506 1.51862 1.12574 1.02281 1.77011 1.25085 1.03714 1.09074 1.22817 0.98283 0.94851 0.94976 1.19935 1.00590 0.93245 0.97434 1.17474 1.12927 0.91696 0.89747 1.42710 1.07627 1.32148 1.50572 1.17308 0.80188 0.83979 0.83062 1.90602 1.51885 1.57706 1.51224 1.20534 0.94141 1.20941 1.24971 0.89486 1.26967 0.96110 0.98487 0.96768 1.70212 1.02295 1.36758 1.34628 0.85032 0.78387 0.77373 0.77563 1.18557 1.19966 1.17101 1.21606 1.01417 0.91110 0.92329 1.20406 1.03978 1.02565 0.86456 0.87541 0.91967 0.93457 0.88635 0.86810 0.92779 0.89177 0.91764 0.76970 0.91571 0.87873 0.91763 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.12 2.66 6.96 86.38 0.60 3.27 16 3 N -0.37 -12.74 3.62 -333.90 -1.21 -13.94 16 4 N -0.32 -13.48 12.56 -47.07 -0.59 -14.07 16 5 C 0.06 2.57 7.21 43.24 0.31 2.88 16 6 C -0.05 -2.21 10.43 71.24 0.74 -1.47 16 7 C -0.01 -0.64 5.72 37.84 0.22 -0.43 16 8 N -0.68 -32.33 5.33 -311.99 -1.66 -34.00 16 9 C 0.55 32.11 7.54 85.12 0.64 32.76 16 10 O -0.63 -42.90 14.84 -4.63 -0.07 -42.97 16 11 C -0.57 -32.08 9.31 23.61 0.22 -31.86 16 12 H 0.09 4.36 7.85 -2.91 -0.02 4.33 16 13 C 0.03 1.86 5.50 85.33 0.47 2.33 16 14 N -0.81 -49.61 11.73 21.85 0.26 -49.36 16 15 Si 1.00 40.43 29.56 68.60 2.03 42.46 16 16 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 19 C 0.07 2.44 6.97 41.55 0.29 2.72 16 20 C -0.08 -2.10 10.08 71.24 0.72 -1.38 16 21 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.11 1.93 7.05 -2.39 -0.02 1.91 16 26 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 28 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 29 H 0.40 16.24 8.79 -92.71 -0.81 15.42 16 30 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 1.98 7.08 -2.38 -0.02 1.96 16 Total: -1.00 -81.51 291.22 4.01 -77.50 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.31 Total: 27.49 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 4.95 Total: 6.88 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -3.21 Total: -111.37 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.07 Total: -42.97 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -81.51 4.01 -77.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320505963.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.889 kcal (2) G-P(sol) polarization free energy of solvation -81.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds