Wall clock time and date at job start Thu Apr 9 2020 12:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47093 * 2 1 4 4 C 1.53000 * 109.46631 * 119.99525 * 2 1 3 5 5 N 1.46500 * 109.46752 * 175.00006 * 4 2 1 6 6 C 1.36945 * 120.00211 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.38802 * 120.00389 * 180.02562 * 6 5 4 9 9 N 1.31627 * 120.00015 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00359 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47203 * 89.99545 * 10 8 6 12 12 H 1.48499 * 109.47523 * 210.00102 * 10 8 6 13 13 H 1.48505 * 109.46611 * 329.99741 * 10 8 6 14 14 N 1.46493 * 109.47195 * 239.99798 * 2 1 3 15 15 C 1.34776 * 120.00435 * 85.00113 * 14 2 1 16 16 O 1.21700 * 119.99354 * 0.02562 * 15 14 2 17 17 C 1.46679 * 120.00261 * 179.97438 * 15 14 2 18 18 C 1.37867 * 126.22973 * 180.02562 * 17 15 14 19 19 C 1.39843 * 107.08397 * 180.02562 * 18 17 15 20 20 C 1.35457 * 107.86071 * 359.97438 * 19 18 17 21 21 N 1.35533 * 108.87474 * 0.23019 * 20 19 18 22 22 H 0.96993 * 125.68142 * 179.75463 * 21 20 19 23 23 H 1.09003 * 109.46751 * 59.99965 * 1 2 3 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47044 * 300.00414 * 1 2 3 26 26 H 1.08999 * 109.47762 * 295.00115 * 4 2 1 27 27 H 1.09003 * 109.47390 * 55.00405 * 4 2 1 28 28 H 0.96997 * 120.00617 * 359.97438 * 5 4 2 29 29 H 0.97000 * 120.00011 * 180.02562 * 9 8 6 30 30 H 0.97005 * 119.99626 * 264.99890 * 14 2 1 31 31 H 1.08004 * 126.46139 * 0.02562 * 18 17 15 32 32 H 1.07994 * 126.06745 * 179.97438 * 19 18 17 33 33 H 1.08002 * 125.55847 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1838 -1.4387 2.2069 7 1 3.6467 -1.8438 3.0518 8 6 5.5671 -1.5379 2.1517 9 7 6.2218 -1.0438 1.1222 10 14 6.4999 -2.3726 3.5382 11 1 6.6325 -3.8220 3.2434 12 1 7.8502 -1.7670 3.6615 13 1 5.7585 -2.1925 4.8122 14 7 2.0184 -0.6906 -1.1961 15 6 2.1471 -0.0184 -2.3571 16 8 1.8582 1.1625 -2.4116 17 6 2.6366 -0.7098 -3.5545 18 6 2.8174 -0.1505 -4.8017 19 6 3.2953 -1.1624 -5.6403 20 6 3.3963 -2.2967 -4.9068 21 7 2.9946 -2.0363 -3.6389 22 1 2.9657 -2.6773 -2.9116 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7516 -0.1582 2.1371 27 1 1.6053 -1.7198 1.2953 28 1 3.9824 -0.4628 0.4317 29 1 7.1885 -1.1134 1.0834 30 1 2.2491 -1.6318 -1.1524 31 1 2.6261 0.8757 -5.0788 32 1 3.5403 -1.0580 -6.6869 33 1 3.7371 -3.2537 -5.2737 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321790210.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:38 Heat of formation + Delta-G solvation = 14.649327 kcal Electronic energy + Delta-G solvation = -16548.204855 eV Core-core repulsion = 13802.815885 eV Total energy + Delta-G solvation = -2745.388970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.09695 -38.96607 -36.13122 -33.69705 -31.69468 -30.78178 -30.10291 -28.70595 -25.72743 -23.26671 -22.42664 -20.86979 -20.10895 -19.90751 -18.76405 -17.12299 -15.98112 -15.48451 -14.96318 -14.66221 -13.94348 -13.73173 -13.66073 -13.38447 -13.21817 -12.67148 -12.35996 -12.25392 -12.19623 -12.08350 -11.62545 -10.94839 -10.88435 -10.49905 -10.10357 -9.79960 -9.77911 -8.97754 -8.91883 -8.79750 -8.10526 -7.02063 -5.83081 -3.13751 1.66641 2.85984 3.21868 3.37738 3.43394 3.45465 3.46350 3.68926 4.52284 5.05823 5.11544 5.26947 5.43301 5.45918 5.48943 5.56629 5.62973 5.97765 6.05444 6.13606 6.16571 6.25081 6.36952 6.42158 6.64837 6.77852 6.89755 7.02628 7.45300 7.62709 7.83461 8.34287 8.48428 9.46069 10.01752 10.37109 11.38887 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.006757 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.465611 B = 4142.954841 C = 5037.094755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.134 3.866 3 H 0.089 0.911 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.245 4.245 7 H 0.071 0.929 8 C -0.012 4.012 9 N -0.930 5.930 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 N -0.711 5.711 15 C 0.589 3.411 16 O -0.538 6.538 17 C -0.046 4.046 18 C -0.115 4.115 19 C -0.215 4.215 20 C 0.018 3.982 21 N -0.535 5.535 22 H 0.418 0.582 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.256 0.744 30 H 0.397 0.603 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.968 -3.407 -9.874 13.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 H 0.107 0.893 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.376 4.376 7 H 0.089 0.911 8 C -0.208 4.208 9 N -0.578 5.578 10 Si 0.739 3.261 11 H -0.218 1.218 12 H -0.217 1.217 13 H -0.207 1.207 14 N -0.361 5.361 15 C 0.376 3.624 16 O -0.416 6.416 17 C -0.160 4.160 18 C -0.141 4.141 19 C -0.240 4.240 20 C -0.118 4.118 21 N -0.131 5.131 22 H 0.256 0.744 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.220 0.780 29 H 0.066 0.934 30 H 0.231 0.769 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.163 -2.699 -9.559 13.514 hybrid contribution 1.004 -1.196 0.866 1.785 sum -8.159 -3.895 -8.693 12.542 Atomic orbital electron populations 1.22106 0.95377 1.01835 1.02302 1.21272 0.93416 0.98118 0.84252 0.89265 1.20997 0.86871 0.96928 0.93649 1.42377 0.99727 1.70320 1.25312 1.19219 0.89443 1.29624 0.99319 0.91109 1.24770 0.96449 1.01491 0.98110 1.69677 1.07304 1.50551 1.30269 0.86179 0.79447 0.78890 0.81574 1.21755 1.21721 1.20709 1.45878 1.66848 1.13937 1.09477 1.17064 0.77384 0.86205 0.81749 1.90803 1.51306 1.14765 1.84682 1.20547 1.14083 0.84554 0.96813 1.21276 1.02242 0.99697 0.90905 1.20850 1.10072 0.92886 1.00180 1.21995 1.05057 1.00669 0.84104 1.42075 1.50242 1.09600 1.11151 0.74439 0.92300 0.92666 0.91518 0.94694 0.95865 0.77998 0.93436 0.76918 0.83718 0.84176 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 2 C 0.13 2.28 2.73 -67.93 -0.19 2.09 16 3 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 4 C 0.14 2.77 5.82 -4.04 -0.02 2.74 16 5 N -0.73 -18.02 5.43 -59.91 -0.33 -18.35 16 6 C -0.25 -6.69 9.99 -15.06 -0.15 -6.84 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 9 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 10 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 N -0.71 -11.69 4.51 -55.11 -0.25 -11.94 16 15 C 0.59 10.48 7.75 -12.85 -0.10 10.38 16 16 O -0.54 -11.14 16.55 5.19 0.09 -11.06 16 17 C -0.05 -0.73 7.06 -81.98 -0.58 -1.30 16 18 C -0.11 -1.69 10.65 -39.12 -0.42 -2.11 16 19 C -0.22 -2.62 10.81 -39.97 -0.43 -3.05 16 20 C 0.02 0.20 11.89 -16.91 -0.20 0.00 16 21 N -0.54 -6.69 5.99 -9.39 -0.06 -6.75 16 22 H 0.42 4.42 8.19 -40.82 -0.33 4.08 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.39 10.24 7.33 -40.82 -0.30 9.94 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.40 6.00 7.73 -40.82 -0.32 5.68 16 31 H 0.15 2.06 8.06 -52.48 -0.42 1.64 16 32 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 289.96 15.07 4.37 4.37 Total: -1.00 -32.86 289.96 -6.58 -39.44 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -4.27 Total: 14.75 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.83 Total: -0.35 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: 0.09 Total: -64.18 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.86 -6.58 -39.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321790210.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.089 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds