Wall clock time and date at job start Thu Apr 9 2020 12:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47093 * 2 1 4 4 C 1.53000 * 109.46631 * 119.99525 * 2 1 3 5 5 N 1.46500 * 109.46752 * 175.00006 * 4 2 1 6 6 C 1.36945 * 120.00211 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.38802 * 120.00389 * 180.02562 * 6 5 4 9 9 N 1.31627 * 120.00015 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00359 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47203 * 89.99545 * 10 8 6 12 12 H 1.48499 * 109.47523 * 210.00102 * 10 8 6 13 13 H 1.48505 * 109.46611 * 329.99741 * 10 8 6 14 14 N 1.46493 * 109.47195 * 239.99798 * 2 1 3 15 15 C 1.34776 * 120.00435 * 85.00113 * 14 2 1 16 16 O 1.21700 * 119.99354 * 0.02562 * 15 14 2 17 17 C 1.46679 * 120.00261 * 179.97438 * 15 14 2 18 18 C 1.37867 * 126.22973 * 180.02562 * 17 15 14 19 19 C 1.39843 * 107.08397 * 180.02562 * 18 17 15 20 20 C 1.35457 * 107.86071 * 359.97438 * 19 18 17 21 21 N 1.35533 * 108.87474 * 0.23019 * 20 19 18 22 22 H 0.96993 * 125.68142 * 179.75463 * 21 20 19 23 23 H 1.09003 * 109.46751 * 59.99965 * 1 2 3 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47044 * 300.00414 * 1 2 3 26 26 H 1.08999 * 109.47762 * 295.00115 * 4 2 1 27 27 H 1.09003 * 109.47390 * 55.00405 * 4 2 1 28 28 H 0.96997 * 120.00617 * 359.97438 * 5 4 2 29 29 H 0.97000 * 120.00011 * 180.02562 * 9 8 6 30 30 H 0.97005 * 119.99626 * 264.99890 * 14 2 1 31 31 H 1.08004 * 126.46139 * 0.02562 * 18 17 15 32 32 H 1.07994 * 126.06745 * 179.97438 * 19 18 17 33 33 H 1.08002 * 125.55847 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1838 -1.4387 2.2069 7 1 3.6467 -1.8438 3.0518 8 6 5.5671 -1.5379 2.1517 9 7 6.2218 -1.0438 1.1222 10 14 6.4999 -2.3726 3.5382 11 1 6.6325 -3.8220 3.2434 12 1 7.8502 -1.7670 3.6615 13 1 5.7585 -2.1925 4.8122 14 7 2.0184 -0.6906 -1.1961 15 6 2.1471 -0.0184 -2.3571 16 8 1.8582 1.1625 -2.4116 17 6 2.6366 -0.7098 -3.5545 18 6 2.8174 -0.1505 -4.8017 19 6 3.2953 -1.1624 -5.6403 20 6 3.3963 -2.2967 -4.9068 21 7 2.9946 -2.0363 -3.6389 22 1 2.9657 -2.6773 -2.9116 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7516 -0.1582 2.1371 27 1 1.6053 -1.7198 1.2953 28 1 3.9824 -0.4628 0.4317 29 1 7.1885 -1.1134 1.0834 30 1 2.2491 -1.6318 -1.1524 31 1 2.6261 0.8757 -5.0788 32 1 3.5403 -1.0580 -6.6869 33 1 3.7371 -3.2537 -5.2737 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321790210.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:36 Heat of formation + Delta-G solvation = -9.444808 kcal Electronic energy + Delta-G solvation = -16549.249655 eV Core-core repulsion = 13802.815885 eV Total energy + Delta-G solvation = -2746.433770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.16725 -40.30451 -37.69422 -35.51123 -33.26099 -32.05672 -31.59302 -29.79952 -27.45231 -24.79164 -24.01583 -22.10250 -21.29653 -21.02088 -20.02689 -19.09124 -17.36038 -16.90595 -16.50920 -16.13409 -15.40128 -15.30927 -15.10774 -14.63934 -14.51969 -14.08124 -13.69968 -13.53861 -13.50047 -13.19654 -13.05185 -12.79295 -12.68038 -12.17202 -11.93020 -11.73985 -11.21736 -10.97548 -10.19687 -9.93203 -9.15223 -9.04645 -7.96553 -5.27100 0.50231 1.46966 1.48730 1.57217 1.87405 2.10428 2.28994 2.41708 2.54338 3.37626 3.72267 3.94031 4.04381 4.26600 4.33871 4.44950 4.47461 4.55018 4.76183 4.82691 4.90756 5.07757 5.13433 5.27283 5.29212 5.47622 5.50539 5.78066 5.96847 6.23342 6.46533 6.61432 7.14216 7.30709 8.03593 8.27440 9.26182 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.006757 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.465611 B = 4142.954841 C = 5037.094755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.139 3.861 3 H 0.060 0.940 4 C 0.145 3.855 5 N -0.744 5.744 6 C -0.245 4.245 7 H 0.081 0.919 8 C -0.074 4.074 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.284 1.284 12 H -0.300 1.300 13 H -0.269 1.269 14 N -0.705 5.705 15 C 0.584 3.416 16 O -0.580 6.580 17 C -0.084 4.084 18 C -0.127 4.127 19 C -0.226 4.226 20 C 0.040 3.960 21 N -0.530 5.530 22 H 0.426 0.574 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.373 0.627 29 H 0.250 0.750 30 H 0.404 0.596 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -5.398 -9.904 14.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.034 3.966 3 H 0.078 0.922 4 C 0.019 3.981 5 N -0.388 5.388 6 C -0.377 4.377 7 H 0.099 0.901 8 C -0.266 4.266 9 N -0.619 5.619 10 Si 0.804 3.196 11 H -0.211 1.211 12 H -0.227 1.227 13 H -0.194 1.194 14 N -0.355 5.355 15 C 0.374 3.626 16 O -0.460 6.460 17 C -0.197 4.197 18 C -0.155 4.155 19 C -0.249 4.249 20 C -0.097 4.097 21 N -0.126 5.126 22 H 0.265 0.735 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.205 0.795 29 H 0.059 0.941 30 H 0.239 0.761 31 H 0.156 0.844 32 H 0.184 0.816 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -9.747 -4.725 -9.551 14.442 hybrid contribution 1.125 -0.594 0.819 1.513 sum -8.623 -5.319 -8.733 13.375 Atomic orbital electron populations 1.22008 0.92441 1.03217 1.02772 1.21159 0.95531 0.96220 0.83646 0.92195 1.21150 0.84042 0.98126 0.94824 1.42557 1.01840 1.70013 1.24347 1.19647 0.89880 1.28389 0.99748 0.90147 1.25579 0.97543 1.02983 1.00536 1.69847 1.07007 1.52673 1.32392 0.85124 0.77503 0.77812 0.79179 1.21104 1.22713 1.19432 1.45802 1.66534 1.14124 1.09037 1.17408 0.76795 0.85876 0.82551 1.90762 1.53374 1.16476 1.85429 1.20301 1.16968 0.86208 0.96262 1.21516 1.02278 1.00249 0.91438 1.21210 1.09991 0.92369 1.01369 1.22772 1.02049 1.01982 0.82904 1.42105 1.49768 1.08561 1.12168 0.73469 0.93059 0.90756 0.89830 0.94148 0.93879 0.79541 0.94142 0.76103 0.84429 0.81605 0.77073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.48 71.98 0.68 -3.14 16 2 C 0.14 4.71 2.73 44.99 0.12 4.84 16 3 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 4 C 0.15 5.44 5.82 86.38 0.50 5.94 16 5 N -0.74 -36.51 5.43 -343.45 -1.87 -38.37 16 6 C -0.25 -13.19 9.99 84.03 0.84 -12.35 16 7 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 8 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 9 N -0.97 -58.76 13.06 21.65 0.28 -58.47 16 10 Si 0.97 45.11 29.55 68.60 2.03 47.13 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 N -0.71 -23.32 4.51 -446.50 -2.01 -25.34 16 15 C 0.58 21.42 7.75 86.45 0.67 22.09 16 16 O -0.58 -25.15 16.55 -4.35 -0.07 -25.23 16 17 C -0.08 -2.65 7.06 40.35 0.28 -2.36 16 18 C -0.13 -3.77 10.65 22.57 0.24 -3.53 16 19 C -0.23 -5.03 10.81 22.02 0.24 -4.79 16 20 C 0.04 0.76 11.89 83.48 0.99 1.76 16 21 N -0.53 -12.47 5.99 -183.62 -1.10 -13.57 16 22 H 0.43 8.33 8.19 -92.71 -0.76 7.58 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 28 H 0.37 20.12 7.33 -92.71 -0.68 19.44 16 29 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.40 12.04 7.73 -92.70 -0.72 11.32 16 31 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 32 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 33 H 0.21 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -71.46 289.96 1.28 -70.18 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -1.01 Total: 38.91 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 5.04 Total: 4.76 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -4.70 Total: -135.75 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.07 Total: -25.23 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.46 1.28 -70.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321790210.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.732 kcal (2) G-P(sol) polarization free energy of solvation -71.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds