Wall clock time and date at job start Thu Apr 9 2020 12:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46843 * 2 1 4 4 C 1.50694 * 109.47362 * 240.00026 * 2 1 3 5 5 H 1.07999 * 119.99724 * 275.00317 * 4 2 1 6 6 C 1.37874 * 120.00313 * 95.00097 * 4 2 1 7 7 N 1.31510 * 119.99977 * 184.91921 * 6 4 2 8 8 Si 1.86803 * 119.99823 * 4.91310 * 6 4 2 9 9 H 1.48494 * 109.46840 * 84.83981 * 8 6 4 10 10 H 1.48501 * 109.46806 * 204.83435 * 8 6 4 11 11 H 1.48499 * 109.47066 * 324.83412 * 8 6 4 12 12 N 1.46495 * 109.47026 * 119.99338 * 2 1 3 13 13 C 1.34777 * 120.00362 * 274.99853 * 12 2 1 14 14 O 1.21280 * 120.00044 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00149 * 179.97438 * 13 12 2 16 16 C 1.50695 * 109.47271 * 180.02562 * 15 13 12 17 17 C 1.34673 * 126.59260 * 85.16893 * 16 15 13 18 18 N 1.34125 * 108.02251 * 180.28514 * 17 16 15 19 19 C 1.30501 * 109.25701 * 359.72740 * 18 17 16 20 20 N 1.35043 * 108.69760 * 0.02562 * 19 18 17 21 21 C 1.46503 * 126.39644 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.46935 * 295.03881 * 1 2 3 23 23 H 1.08999 * 109.47408 * 55.04025 * 1 2 3 24 24 H 1.09001 * 109.47141 * 175.03829 * 1 2 3 25 25 H 0.97000 * 119.99893 * 179.97438 * 7 6 4 26 26 H 0.96999 * 119.99805 * 95.00251 * 12 2 1 27 27 H 1.09004 * 109.46647 * 60.00750 * 15 13 12 28 28 H 1.09004 * 109.47375 * 300.00898 * 15 13 12 29 29 H 1.08000 * 125.98819 * 0.05017 * 17 16 15 30 30 H 1.08003 * 125.65550 * 180.02562 * 19 18 17 31 31 H 1.09007 * 109.47164 * 90.02573 * 21 20 19 32 32 H 1.09002 * 109.47223 * 330.02914 * 21 20 19 33 33 H 1.08997 * 109.47297 * 210.02512 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7854 -1.2289 6 6 2.3604 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4621 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3949 -1.7822 10 1 2.1058 2.3990 -3.6928 11 1 1.1986 2.3274 -1.4450 12 7 2.0183 -0.6904 1.1962 13 6 2.1471 -0.0180 2.3571 14 8 1.8583 1.1586 2.4117 15 6 2.6489 -0.7285 3.5878 16 6 2.6991 0.2398 4.7414 17 6 1.6827 0.5617 5.5643 18 7 2.1356 1.4599 6.4514 19 6 3.3955 1.7026 6.2133 20 7 3.7873 0.9592 5.1562 21 6 5.1256 0.9322 4.5606 22 1 -0.3633 0.4349 0.9311 23 1 -0.3634 0.5888 -0.8422 24 1 -0.3633 -1.0238 -0.0889 25 1 2.9364 -0.1049 -4.2555 26 1 2.2490 -1.6316 1.1527 27 1 3.6480 -1.1210 3.3987 28 1 1.9760 -1.5504 3.8327 29 1 0.6780 0.1685 5.5157 30 1 4.0213 2.3849 6.7695 31 1 5.7247 0.1628 5.0478 32 1 5.6025 1.9031 4.6946 33 1 5.0453 0.7105 3.4964 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324175699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:42 Heat of formation + Delta-G solvation = 17.934573 kcal Electronic energy + Delta-G solvation = -16670.627535 eV Core-core repulsion = 13925.381024 eV Total energy + Delta-G solvation = -2745.246511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.98264 -38.91503 -34.94411 -33.97054 -32.49390 -31.98449 -29.72556 -27.01862 -26.68490 -25.32926 -21.57421 -21.30807 -19.89291 -19.48502 -17.52123 -16.94570 -16.16466 -15.49807 -15.32934 -14.94915 -14.17234 -13.93417 -13.55570 -13.11123 -12.96103 -12.81032 -12.58241 -12.53328 -12.41275 -12.04478 -11.38174 -11.13398 -10.84453 -10.60559 -9.92065 -9.86374 -9.52287 -9.24679 -9.20518 -8.75213 -8.19274 -8.12524 -6.28042 -4.31736 2.10144 2.84701 3.20043 3.24738 3.29795 3.30315 3.38236 4.05730 4.28295 4.65143 4.69637 4.78057 5.01529 5.09520 5.13760 5.28454 5.43266 5.47805 5.62377 5.89592 6.31807 6.43308 6.51154 6.66308 6.84921 6.92282 7.16435 7.27137 7.34370 7.52275 8.09320 8.18070 8.52900 8.72605 8.94863 9.34265 10.83655 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036645 B = 0.006059 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.895065 B = 4619.801367 C = 4770.754900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.048 0.952 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.705 5.705 13 C 0.499 3.501 14 O -0.548 6.548 15 C -0.070 4.070 16 C 0.005 3.995 17 C -0.015 4.015 18 N -0.496 5.496 19 C 0.175 3.825 20 N -0.455 5.455 21 C 0.071 3.929 22 H 0.029 0.971 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.268 0.732 26 H 0.393 0.607 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.166 0.834 30 H 0.202 0.798 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -0.453 14.556 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.354 5.354 13 C 0.283 3.717 14 O -0.426 6.426 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.163 4.163 18 N -0.214 5.214 19 C -0.107 4.107 20 N -0.139 5.139 21 C -0.072 4.072 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.227 0.773 27 H 0.113 0.887 28 H 0.131 0.869 29 H 0.183 0.817 30 H 0.218 0.782 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.954 0.777 14.919 15.454 hybrid contribution 0.738 0.175 -0.907 1.182 sum 4.692 0.952 14.012 14.807 Atomic orbital electron populations 1.22214 0.98551 1.00583 0.99300 1.19116 0.90975 0.94244 0.82760 0.93374 1.21013 1.45237 0.95627 0.94970 0.90298 1.24934 0.93630 0.98576 0.95166 1.69879 1.44733 1.36193 1.01684 0.86902 0.79732 0.85897 0.77413 1.20004 1.21118 1.18478 1.46635 1.65102 1.13864 1.09754 1.20406 0.79056 0.87712 0.84569 1.90687 1.50832 1.16075 1.85019 1.20132 1.03899 0.96746 0.90356 1.20525 0.88345 1.01722 1.00445 1.21931 0.98874 1.00131 0.95375 1.70220 1.08448 1.16245 1.26459 1.24793 0.93537 1.00349 0.92027 1.45186 1.10119 1.33167 1.25388 1.22038 0.81102 1.03884 1.00193 0.95155 0.92977 0.93371 0.92213 0.77341 0.88722 0.86940 0.81689 0.78151 0.90535 0.89428 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.47 37.16 0.35 -2.87 16 2 C 0.23 5.41 2.22 -69.09 -0.15 5.26 16 3 H 0.05 1.24 4.73 -51.93 -0.25 1.00 16 4 C -0.53 -13.96 9.05 -34.44 -0.31 -14.27 16 5 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 8 Si 0.87 21.44 26.99 -169.99 -4.59 16.85 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.26 -6.36 6.82 56.52 0.39 -5.98 16 12 N -0.70 -13.50 5.07 -54.93 -0.28 -13.77 16 13 C 0.50 9.15 7.79 -10.98 -0.09 9.07 16 14 O -0.55 -12.53 15.70 5.56 0.09 -12.45 16 15 C -0.07 -0.92 5.88 -29.04 -0.17 -1.09 16 16 C 0.00 0.07 5.45 -81.60 -0.44 -0.38 16 17 C -0.02 -0.24 11.79 -17.81 -0.21 -0.45 16 18 N -0.50 -8.04 11.25 -14.66 -0.16 -8.21 16 19 C 0.17 2.30 12.56 -90.37 -1.14 1.17 16 20 N -0.46 -5.93 3.15 -121.36 -0.38 -6.31 16 21 C 0.07 0.64 10.83 59.85 0.65 1.29 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.39 6.44 8.59 -40.82 -0.35 6.09 16 27 H 0.09 1.01 7.63 -51.93 -0.40 0.62 16 28 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.17 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.20 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.88 7.67 -51.93 -0.40 0.48 16 LS Contribution 287.61 15.07 4.33 4.33 Total: -1.00 -34.54 287.61 -6.17 -40.71 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.35 Total: 3.98 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.61 Total: -0.12 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.05 Total: -53.31 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.59 Total: 16.85 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.54 -6.17 -40.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324175699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.647 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds