Wall clock time and date at job start Thu Apr 9 2020 12:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46843 * 2 1 4 4 C 1.50694 * 109.47362 * 240.00026 * 2 1 3 5 5 H 1.07999 * 119.99724 * 275.00317 * 4 2 1 6 6 C 1.37874 * 120.00313 * 95.00097 * 4 2 1 7 7 N 1.31510 * 119.99977 * 184.91921 * 6 4 2 8 8 Si 1.86803 * 119.99823 * 4.91310 * 6 4 2 9 9 H 1.48494 * 109.46840 * 84.83981 * 8 6 4 10 10 H 1.48501 * 109.46806 * 204.83435 * 8 6 4 11 11 H 1.48499 * 109.47066 * 324.83412 * 8 6 4 12 12 N 1.46495 * 109.47026 * 119.99338 * 2 1 3 13 13 C 1.34777 * 120.00362 * 274.99853 * 12 2 1 14 14 O 1.21280 * 120.00044 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00149 * 179.97438 * 13 12 2 16 16 C 1.50695 * 109.47271 * 180.02562 * 15 13 12 17 17 C 1.34673 * 126.59260 * 85.16893 * 16 15 13 18 18 N 1.34125 * 108.02251 * 180.28514 * 17 16 15 19 19 C 1.30501 * 109.25701 * 359.72740 * 18 17 16 20 20 N 1.35043 * 108.69760 * 0.02562 * 19 18 17 21 21 C 1.46503 * 126.39644 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.46935 * 295.03881 * 1 2 3 23 23 H 1.08999 * 109.47408 * 55.04025 * 1 2 3 24 24 H 1.09001 * 109.47141 * 175.03829 * 1 2 3 25 25 H 0.97000 * 119.99893 * 179.97438 * 7 6 4 26 26 H 0.96999 * 119.99805 * 95.00251 * 12 2 1 27 27 H 1.09004 * 109.46647 * 60.00750 * 15 13 12 28 28 H 1.09004 * 109.47375 * 300.00898 * 15 13 12 29 29 H 1.08000 * 125.98819 * 0.05017 * 17 16 15 30 30 H 1.08003 * 125.65550 * 180.02562 * 19 18 17 31 31 H 1.09007 * 109.47164 * 90.02573 * 21 20 19 32 32 H 1.09002 * 109.47223 * 330.02914 * 21 20 19 33 33 H 1.08997 * 109.47297 * 210.02512 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7854 -1.2289 6 6 2.3604 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4621 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3949 -1.7822 10 1 2.1058 2.3990 -3.6928 11 1 1.1986 2.3274 -1.4450 12 7 2.0183 -0.6904 1.1962 13 6 2.1471 -0.0180 2.3571 14 8 1.8583 1.1586 2.4117 15 6 2.6489 -0.7285 3.5878 16 6 2.6991 0.2398 4.7414 17 6 1.6827 0.5617 5.5643 18 7 2.1356 1.4599 6.4514 19 6 3.3955 1.7026 6.2133 20 7 3.7873 0.9592 5.1562 21 6 5.1256 0.9322 4.5606 22 1 -0.3633 0.4349 0.9311 23 1 -0.3634 0.5888 -0.8422 24 1 -0.3633 -1.0238 -0.0889 25 1 2.9364 -0.1049 -4.2555 26 1 2.2490 -1.6316 1.1527 27 1 3.6480 -1.1210 3.3987 28 1 1.9760 -1.5504 3.8327 29 1 0.6780 0.1685 5.5157 30 1 4.0213 2.3849 6.7695 31 1 5.7247 0.1628 5.0478 32 1 5.6025 1.9031 4.6946 33 1 5.0453 0.7105 3.4964 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324175699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:42 Heat of formation + Delta-G solvation = -6.173331 kcal Electronic energy + Delta-G solvation = -16671.672932 eV Core-core repulsion = 13925.381024 eV Total energy + Delta-G solvation = -2746.291908 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.00537 -40.46156 -36.72712 -34.93064 -34.38991 -33.28511 -31.37120 -27.95709 -27.72708 -27.31981 -23.17586 -22.34755 -21.41785 -20.78288 -19.28043 -18.00458 -17.71748 -17.17378 -16.43136 -16.21997 -15.80918 -15.25275 -14.79111 -14.58360 -14.45429 -14.27226 -13.93040 -13.67128 -13.46553 -13.35308 -13.04232 -12.87193 -12.79568 -12.43680 -11.90438 -11.24004 -10.95153 -10.89072 -10.80100 -10.42737 -9.79951 -9.28051 -8.40198 -6.45633 1.05505 1.26288 1.31702 1.42224 1.79304 1.97032 2.19594 2.25046 2.60666 3.04700 3.62344 3.90946 3.96181 4.09567 4.21368 4.42958 4.44724 4.48427 4.59816 4.70257 4.73787 4.83309 4.88028 5.10467 5.37175 5.41400 5.45027 5.75634 5.80212 6.12568 6.34710 6.60036 6.93119 7.13903 7.20815 7.50470 8.74711 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036645 B = 0.006059 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.895065 B = 4619.801367 C = 4770.754900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.235 3.765 3 H 0.026 0.974 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.036 3.964 7 N -0.928 5.928 8 Si 0.923 3.077 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.262 1.262 12 N -0.702 5.702 13 C 0.500 3.500 14 O -0.594 6.594 15 C -0.055 4.055 16 C -0.010 4.010 17 C -0.041 4.041 18 N -0.537 5.537 19 C 0.179 3.821 20 N -0.458 5.458 21 C 0.064 3.936 22 H 0.035 0.965 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.270 0.730 26 H 0.409 0.591 27 H 0.126 0.874 28 H 0.144 0.856 29 H 0.167 0.833 30 H 0.240 0.760 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -0.488 15.904 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.130 3.870 3 H 0.044 0.956 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.165 4.165 7 N -0.567 5.567 8 Si 0.749 3.251 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.186 1.186 12 N -0.352 5.352 13 C 0.287 3.713 14 O -0.476 6.476 15 C -0.096 4.096 16 C -0.125 4.125 17 C -0.189 4.189 18 N -0.256 5.256 19 C -0.103 4.103 20 N -0.140 5.140 21 C -0.077 4.077 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.244 0.756 27 H 0.144 0.856 28 H 0.162 0.838 29 H 0.185 0.815 30 H 0.256 0.744 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.946 0.707 16.276 17.025 hybrid contribution 0.459 0.162 -1.251 1.343 sum 5.405 0.869 15.025 15.991 Atomic orbital electron populations 1.22116 0.97368 1.01315 0.99248 1.18836 0.91815 0.92996 0.83306 0.95609 1.21191 1.44074 0.94927 0.95977 0.92113 1.25547 0.93905 1.01965 0.95083 1.69966 1.46718 1.37603 1.02422 0.86110 0.79507 0.81942 0.77556 1.19945 1.20322 1.18612 1.46340 1.65245 1.14547 1.09052 1.21199 0.77624 0.87146 0.85329 1.90670 1.52721 1.18378 1.85791 1.20107 1.06069 0.96465 0.86915 1.20707 0.88803 1.02372 1.00665 1.22181 0.99622 1.00854 0.96235 1.70180 1.10282 1.17402 1.27708 1.25562 0.93118 0.99824 0.91819 1.45463 1.11053 1.32329 1.25169 1.22327 0.79638 1.06236 0.99519 0.94622 0.93748 0.92094 0.92026 0.75565 0.85630 0.83822 0.81532 0.74425 0.87644 0.87394 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.47 71.98 0.68 -5.36 16 2 C 0.23 10.78 2.22 44.25 0.10 10.88 16 3 H 0.03 1.32 4.73 -2.39 -0.01 1.31 16 4 C -0.52 -27.40 9.05 25.60 0.23 -27.17 16 5 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 6 C 0.04 1.96 5.47 84.65 0.46 2.42 16 7 N -0.93 -54.20 13.96 21.45 0.30 -53.90 16 8 Si 0.92 44.16 26.99 68.60 1.85 46.01 16 9 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.26 -12.46 6.82 99.48 0.68 -11.78 16 12 N -0.70 -25.73 5.07 -446.10 -2.26 -27.99 16 13 C 0.50 17.48 7.79 87.66 0.68 18.16 16 14 O -0.59 -26.71 15.70 -3.03 -0.05 -26.76 16 15 C -0.05 -1.28 5.88 29.10 0.17 -1.11 16 16 C -0.01 -0.26 5.45 40.95 0.22 -0.04 16 17 C -0.04 -1.28 11.79 83.52 0.98 -0.29 16 18 N -0.54 -16.90 11.25 -200.31 -2.25 -19.15 16 19 C 0.18 4.32 12.56 180.26 2.26 6.59 16 20 N -0.46 -10.75 3.15 -537.87 -1.70 -12.45 16 21 C 0.06 0.95 10.83 127.77 1.38 2.34 16 22 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 26 H 0.41 12.51 8.59 -92.71 -0.80 11.72 16 27 H 0.13 2.19 7.63 -2.38 -0.02 2.17 16 28 H 0.14 2.48 8.14 -2.38 -0.02 2.46 16 29 H 0.17 4.74 8.06 -2.91 -0.02 4.71 16 30 H 0.24 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.32 7.67 -2.39 -0.02 1.30 16 Total: -1.00 -75.02 287.61 3.37 -71.65 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.29 Total: 16.18 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 7.18 Total: 6.42 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -5.91 Total: -113.49 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.85 Total: 46.01 kcal Total: -75.02 3.37 -71.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324175699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.474 kcal (2) G-P(sol) polarization free energy of solvation -75.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds