Wall clock time and date at job start Thu Apr 9 2020 12:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46886 * 2 1 4 4 C 1.50690 * 109.47199 * 239.99464 * 2 1 3 5 5 H 1.08004 * 120.00087 * 240.00303 * 4 2 1 6 6 C 1.37877 * 120.00227 * 60.00351 * 4 2 1 7 7 N 1.31517 * 119.99970 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00097 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47170 * 89.99521 * 8 6 4 10 10 H 1.48510 * 109.46695 * 209.99806 * 8 6 4 11 11 H 1.48504 * 109.46914 * 329.99535 * 8 6 4 12 12 C 1.50702 * 109.46900 * 119.99121 * 2 1 3 13 13 O 1.21289 * 119.99758 * 120.00034 * 12 2 1 14 14 N 1.34773 * 120.00264 * 300.00329 * 12 2 1 15 15 C 1.46498 * 120.00017 * 180.02562 * 14 12 2 16 16 C 1.50697 * 109.47357 * 180.02562 * 15 14 12 17 17 C 1.34669 * 126.59585 * 95.16155 * 16 15 14 18 18 N 1.34133 * 108.02235 * 180.28483 * 17 16 15 19 19 C 1.30502 * 109.25197 * 359.73051 * 18 17 16 20 20 N 1.35041 * 108.70384 * 0.02562 * 19 18 17 21 21 C 1.46499 * 126.39764 * 180.02562 * 20 19 18 22 22 H 1.09000 * 109.46754 * 60.00629 * 1 2 3 23 23 H 1.08997 * 109.47171 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47519 * 300.00771 * 1 2 3 25 25 H 0.96998 * 119.99822 * 180.02562 * 7 6 4 26 26 H 0.96997 * 119.99915 * 359.97438 * 14 12 2 27 27 H 1.09000 * 109.47447 * 59.99528 * 15 14 12 28 28 H 1.09006 * 109.46888 * 299.99791 * 15 14 12 29 29 H 1.07993 * 125.98713 * 0.05405 * 17 16 15 30 30 H 1.08005 * 125.64657 * 180.02562 * 19 18 17 31 31 H 1.09002 * 109.47391 * 90.01916 * 21 20 19 32 32 H 1.09001 * 109.46813 * 330.01972 * 21 20 19 33 33 H 1.09004 * 109.47041 * 210.02099 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.3429 -2.1621 -4.4116 10 1 2.4867 -0.1417 -5.1122 11 1 3.6294 -1.7587 -3.7119 12 6 2.0323 -0.7102 1.2306 13 8 2.7296 -1.6964 1.1194 14 7 1.7066 -0.2497 2.4546 15 6 2.1954 -0.9398 3.6509 16 6 1.6924 -0.2298 4.8812 17 6 0.5916 -0.5387 5.5929 18 7 0.4929 0.3357 6.6051 19 6 1.4939 1.1713 6.5511 20 7 2.2681 0.8516 5.4919 21 6 3.4928 1.5371 5.0719 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.7083 1.1606 -3.4845 26 1 1.1493 0.5392 2.5435 27 1 3.2854 -0.9394 3.6507 28 1 1.8324 -1.9677 3.6511 29 1 -0.0937 -1.3465 5.3829 30 1 1.6734 1.9839 7.2396 31 1 4.3519 1.0796 5.5627 32 1 3.4336 2.5895 5.3497 33 1 3.6042 1.4524 3.9909 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336017181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:07:19 Heat of formation + Delta-G solvation = 18.491801 kcal Electronic energy + Delta-G solvation = -16512.018632 eV Core-core repulsion = 13766.796285 eV Total energy + Delta-G solvation = -2745.222347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.17698 -38.76718 -34.58008 -33.92776 -33.73867 -30.93482 -29.70975 -27.12038 -25.72482 -25.12444 -22.33874 -21.51508 -20.16915 -19.38536 -17.27803 -16.33355 -15.94670 -15.86377 -14.97354 -14.90914 -14.39768 -14.05352 -13.66230 -13.08737 -13.02842 -12.89635 -12.74700 -12.48236 -12.16835 -11.48107 -11.02820 -10.73911 -10.67307 -10.28003 -10.06496 -9.96920 -9.70410 -8.99079 -8.86049 -8.53865 -8.44583 -8.25928 -6.04143 -4.07543 1.84288 2.65984 3.06476 3.33242 3.39018 3.45663 3.67978 4.03696 4.47401 4.55160 4.56892 4.62583 4.93216 5.13881 5.22997 5.29182 5.42172 5.70451 5.74444 6.22997 6.29288 6.62246 6.63541 6.82632 6.90820 6.98337 7.06438 7.46000 7.74939 7.95865 7.97898 8.12621 8.40909 9.01499 9.18287 9.58158 11.03397 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047782 B = 0.005079 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.848162 B = 5511.620985 C = 5584.439402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.051 0.949 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.545 6.545 14 N -0.745 5.745 15 C 0.197 3.803 16 C -0.038 4.038 17 C -0.007 4.007 18 N -0.497 5.497 19 C 0.181 3.819 20 N -0.454 5.454 21 C 0.068 3.932 22 H 0.093 0.907 23 H 0.032 0.968 24 H 0.012 0.988 25 H 0.261 0.739 26 H 0.397 0.603 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.171 0.829 30 H 0.205 0.795 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 3.528 14.886 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.310 3.690 13 O -0.421 6.421 14 N -0.400 5.400 15 C 0.072 3.928 16 C -0.153 4.153 17 C -0.157 4.157 18 N -0.215 5.215 19 C -0.101 4.101 20 N -0.138 5.138 21 C -0.075 4.075 22 H 0.111 0.889 23 H 0.051 0.949 24 H 0.031 0.969 25 H 0.070 0.930 26 H 0.231 0.769 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.188 0.812 30 H 0.221 0.779 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.335 2.987 15.188 15.654 hybrid contribution 0.682 0.095 -1.265 1.440 sum 3.017 3.081 13.923 14.575 Atomic orbital electron populations 1.21743 0.96452 0.99907 1.00941 1.18870 0.94215 0.96730 0.89246 0.93134 1.21142 1.31022 1.12805 0.88977 0.90769 1.24956 0.95120 0.95050 0.99134 1.69874 1.37097 1.23111 1.23543 0.86448 0.79455 0.79253 0.82033 1.20634 1.21317 1.19754 1.22039 0.78370 0.84293 0.84292 1.90541 1.38014 1.26830 1.86708 1.46445 1.55672 1.32851 1.05081 1.19416 0.98513 0.95305 0.79591 1.21372 0.98967 0.94453 1.00473 1.22171 0.97807 1.01514 0.94176 1.70309 1.22110 1.05950 1.23091 1.24954 0.89998 1.02367 0.92771 1.45338 1.21378 1.24172 1.22866 1.22109 0.84595 0.97794 1.02955 0.88850 0.94908 0.96925 0.92960 0.76921 0.91584 0.89672 0.81158 0.77886 0.90400 0.89265 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.87 37.16 0.33 -2.71 16 2 C 0.03 0.75 2.64 -92.93 -0.25 0.50 16 3 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.50 -14.09 8.37 -34.44 -0.29 -14.38 16 5 H 0.07 2.20 6.75 -52.48 -0.35 1.85 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.52 11.56 7.15 -10.99 -0.08 11.48 16 13 O -0.55 -13.89 15.46 5.55 0.09 -13.80 16 14 N -0.75 -12.64 5.44 -61.47 -0.33 -12.97 16 15 C 0.20 2.86 5.73 -5.20 -0.03 2.83 16 16 C -0.04 -0.49 6.32 -81.60 -0.52 -1.01 16 17 C -0.01 -0.10 11.79 -17.81 -0.21 -0.31 16 18 N -0.50 -6.87 11.25 -14.66 -0.16 -7.04 16 19 C 0.18 1.96 12.56 -90.37 -1.14 0.83 16 20 N -0.45 -4.92 3.15 -121.36 -0.38 -5.30 16 21 C 0.07 0.52 10.96 59.85 0.66 1.17 16 22 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.40 6.20 7.88 -40.82 -0.32 5.87 16 27 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.20 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.81 7.88 -51.93 -0.41 0.40 16 LS Contribution 286.53 15.07 4.32 4.32 Total: -1.00 -32.84 286.53 -6.79 -39.63 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.31 Total: 3.02 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.61 Total: -0.10 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.25 Total: -49.73 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.84 -6.79 -39.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336017181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.122 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds