Wall clock time and date at job start Thu Apr 9 2020 12:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47271 * 60.00212 * 8 6 4 10 10 H 1.48499 * 109.47272 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47293 * 300.00056 * 8 6 4 12 12 C 1.36255 * 120.00189 * 180.02562 * 2 1 3 13 13 C 1.35049 * 119.41843 * 180.02562 * 12 2 1 14 14 C 1.39832 * 121.69497 * 180.26383 * 13 12 2 15 15 O 1.21536 * 119.70736 * 180.02562 * 14 13 12 16 16 C 1.50692 * 120.58967 * 0.04620 * 14 13 12 17 17 C 1.53202 * 109.08380 * 28.92376 * 16 14 13 18 18 C 1.52993 * 109.57127 * 63.03557 * 17 16 14 19 19 C 1.53000 * 109.56978 * 183.41342 * 17 16 14 20 20 C 1.50542 * 119.41269 * 359.72032 * 12 2 1 21 21 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 22 22 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 23 23 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 24 24 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 25 25 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 26 26 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 27 27 H 1.07999 * 119.15196 * 0.23699 * 13 12 2 28 28 H 1.09000 * 109.53698 * 148.81094 * 16 14 13 29 29 H 1.09002 * 109.53459 * 269.04396 * 16 14 13 30 30 H 1.08999 * 109.47582 * 59.99691 * 18 17 16 31 31 H 1.09004 * 109.47085 * 179.97438 * 18 17 16 32 32 H 1.09004 * 109.47435 * 300.00086 * 18 17 16 33 33 H 1.09002 * 109.46889 * 60.00583 * 19 17 16 34 34 H 1.09007 * 109.46501 * 179.97438 * 19 17 16 35 35 H 1.08990 * 109.47458 * 300.00116 * 19 17 16 36 36 H 1.09004 * 109.47081 * 270.36946 * 20 12 2 37 37 H 1.08996 * 109.47068 * 30.37597 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 4.2414 2.3810 4.1335 10 1 4.1814 4.7024 3.4339 11 1 2.1416 3.5942 4.1343 12 6 2.1463 -1.1800 -0.0005 13 6 3.4967 -1.1662 0.0000 14 6 4.2435 -2.3484 -0.0060 15 8 5.4576 -2.2939 -0.0048 16 6 3.5563 -3.6895 -0.0143 17 6 2.2008 -3.5534 -0.7152 18 6 2.4168 -3.1492 -2.1748 19 6 1.4564 -4.8887 -0.6551 20 6 1.3803 -2.4760 0.0053 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5139 23 1 -0.3633 -0.8900 0.5139 24 1 3.1499 1.1384 -0.5139 25 1 1.6084 2.0284 -0.5139 26 1 4.0311 4.4434 0.8503 27 1 4.0132 -0.2177 0.0047 28 1 4.1727 -4.4116 -0.5498 29 1 3.4043 -4.0276 1.0107 30 1 3.0106 -3.9117 -2.6790 31 1 1.4515 -3.0532 -2.6720 32 1 2.9424 -2.1950 -2.2137 33 1 1.2993 -5.1706 0.3861 34 1 0.4921 -4.7898 -1.1538 35 1 2.0470 -5.6568 -1.1544 36 1 1.1941 -2.7833 1.0344 37 1 0.4301 -2.3386 -0.5106 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004828180.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:38 Heat of formation + Delta-G solvation = -33.181245 kcal Electronic energy + Delta-G solvation = -17498.392108 eV Core-core repulsion = 14854.469392 eV Total energy + Delta-G solvation = -2643.922715 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.00823 -37.34920 -36.24050 -32.83917 -31.14279 -29.03913 -28.02497 -27.22058 -26.35708 -25.18942 -22.85598 -20.09076 -19.44978 -16.66705 -16.51795 -16.35645 -15.53910 -14.67006 -14.53968 -14.20151 -14.11194 -13.75675 -13.31760 -13.16134 -12.62596 -12.30098 -12.26403 -12.07676 -11.74187 -11.57887 -11.53111 -11.11481 -11.05235 -10.71721 -10.66039 -10.55014 -10.34494 -10.16905 -9.94855 -9.14926 -8.63546 -8.51560 -6.70440 -6.11590 -4.21786 2.04200 3.27255 3.32656 3.35604 3.85884 3.98513 4.37636 4.71106 4.73893 4.91606 5.14257 5.20120 5.39498 5.49636 5.50920 5.58218 5.64691 5.70441 5.78058 5.82626 5.86108 5.91773 6.06492 6.13450 6.21190 6.23520 6.46657 6.67326 6.78548 7.15473 7.24609 7.49028 7.73625 7.98175 8.07439 8.26981 8.74689 8.83344 9.44677 10.92562 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029374 B = 0.007289 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.002763 B = 3840.504295 C = 4265.517686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.576 5.576 3 C 0.239 3.761 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.268 3.732 13 C -0.411 4.411 14 C 0.404 3.596 15 O -0.526 6.526 16 C -0.159 4.159 17 C -0.051 4.051 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.093 4.093 21 H 0.046 0.954 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.266 0.734 27 H 0.137 0.863 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 -12.805 -3.099 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.275 5.275 3 C 0.120 3.880 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.151 3.849 13 C -0.440 4.440 14 C 0.292 3.708 15 O -0.410 6.410 16 C -0.197 4.197 17 C -0.052 4.052 18 C -0.205 4.205 19 C -0.196 4.196 20 C -0.131 4.131 21 H 0.065 0.935 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.154 0.846 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.129 -12.394 -3.152 15.154 hybrid contribution 0.048 0.520 1.059 1.181 sum -8.081 -11.874 -2.093 14.515 Atomic orbital electron populations 1.21742 0.81101 1.02811 1.00636 1.46863 1.05320 1.06130 1.69226 1.19553 0.92654 0.77946 0.97833 1.21362 1.37336 1.06641 0.92022 0.92225 1.24938 0.95091 0.96240 0.97615 1.69907 1.37817 1.14360 1.30947 0.86531 0.78404 0.77986 0.84414 1.19959 1.21078 1.20248 1.20173 0.92510 0.86324 0.85942 1.20990 0.92830 1.00455 1.29737 1.19934 0.88773 0.89706 0.72432 1.90518 1.16627 1.90206 1.43667 1.22230 0.96446 0.99188 1.01831 1.20522 0.94306 0.94495 0.95844 1.21964 1.01668 1.02586 0.94297 1.21848 0.99947 0.95967 1.01865 1.21061 0.98352 0.91738 1.01935 0.93518 0.90546 0.92164 0.93431 0.94767 0.92423 0.84571 0.89988 0.89464 0.92602 0.92737 0.91301 0.92488 0.92488 0.92319 0.89286 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 9.85 59.85 0.59 1.78 16 2 N -0.58 -11.18 2.90 -179.02 -0.52 -11.70 16 3 C 0.24 5.83 4.80 -5.20 -0.02 5.81 16 4 C -0.54 -14.44 9.39 -34.45 -0.32 -14.77 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.27 4.90 5.76 -81.84 -0.47 4.43 16 13 C -0.41 -8.84 7.97 -40.12 -0.32 -9.16 16 14 C 0.40 8.24 6.06 -33.72 -0.20 8.04 16 15 O -0.53 -12.84 17.82 5.33 0.10 -12.75 16 16 C -0.16 -2.36 4.87 -27.78 -0.14 -2.49 16 17 C -0.05 -0.63 0.78 -154.20 -0.12 -0.75 16 18 C -0.15 -1.88 8.10 37.15 0.30 -1.57 16 19 C -0.14 -1.28 8.50 37.16 0.32 -0.96 16 20 C -0.09 -1.23 3.76 -27.75 -0.10 -1.33 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 23 H 0.06 0.72 6.52 -51.93 -0.34 0.39 16 24 H 0.05 1.28 6.06 -51.93 -0.31 0.96 16 25 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 27 H 0.14 3.53 5.81 -52.49 -0.30 3.23 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.07 6.14 -51.93 -0.32 0.75 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.91 6.61 -51.93 -0.34 0.56 16 LS Contribution 296.85 15.07 4.47 4.47 Total: -1.00 -31.63 296.85 -6.64 -38.27 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.81 Total: -0.41 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.60 Total: -9.30 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.22 Total: -36.75 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.10 Total: -12.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.63 -6.64 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004828180.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.084 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds