Wall clock time and date at job start Thu Apr 9 2020 12:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.46496 * 120.00339 * 180.02562 * 14 12 2 16 16 C 1.50697 * 109.47353 * 179.97438 * 15 14 12 17 17 N 1.30504 * 125.64495 * 90.02966 * 16 15 14 18 18 C 1.34128 * 109.25389 * 180.02562 * 17 16 15 19 19 C 1.34674 * 108.01800 * 359.97438 * 18 17 16 20 20 N 1.35041 * 125.65311 * 269.71918 * 16 15 14 21 21 C 1.46501 * 126.39636 * 0.02562 * 20 16 15 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 26 26 H 0.97005 * 119.99795 * 359.97438 * 14 12 2 27 27 H 1.08996 * 109.46956 * 300.00500 * 15 14 12 28 28 H 1.09001 * 109.47062 * 59.99678 * 15 14 12 29 29 H 1.08000 * 125.99141 * 180.02562 * 18 17 16 30 30 H 1.08006 * 126.58851 * 180.02562 * 19 18 17 31 31 H 1.08995 * 109.46941 * 89.99863 * 21 20 16 32 32 H 1.08998 * 109.46810 * 210.00475 * 21 20 16 33 33 H 1.09002 * 109.46838 * 329.99969 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1946 -0.9406 -3.6508 16 6 1.6918 -0.2305 -4.8812 17 7 2.3043 0.7399 -5.5029 18 6 1.5656 1.1282 -6.5529 19 6 0.4534 0.3693 -6.5833 20 7 0.5358 -0.4966 -5.5265 21 6 -0.4485 -1.5183 -5.1610 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7096 1.1617 3.4844 26 1 1.1487 0.5386 -2.5436 27 1 3.2846 -0.9411 -3.6510 28 1 1.8310 -1.9682 -3.6507 29 1 1.8187 1.9116 -7.2520 30 1 -0.3473 0.4293 -7.3056 31 1 -1.1808 -1.0890 -4.4773 32 1 -0.9541 -1.8734 -6.0589 33 1 0.0573 -2.3525 -4.6748 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347394126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:43 Heat of formation + Delta-G solvation = 21.002522 kcal Electronic energy + Delta-G solvation = -16526.769932 eV Core-core repulsion = 13781.656457 eV Total energy + Delta-G solvation = -2745.113474 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.17676 -38.74130 -34.38943 -34.05858 -33.71975 -30.86800 -29.68365 -27.26305 -25.92412 -25.12096 -22.35033 -21.47006 -20.03488 -19.36719 -17.30513 -16.33051 -15.91435 -15.88572 -14.98204 -14.87548 -14.38968 -14.02030 -13.72115 -13.08541 -13.04377 -12.90481 -12.69523 -12.43164 -12.16007 -11.47198 -11.00318 -10.71969 -10.70259 -10.24496 -10.03398 -9.95376 -9.71415 -8.97170 -8.84018 -8.52046 -8.44402 -8.26860 -6.01705 -4.04867 1.85818 2.64743 3.00341 3.35386 3.40966 3.47834 3.70907 4.03637 4.38025 4.50079 4.54727 4.68997 4.92433 5.17551 5.26585 5.31733 5.41179 5.64684 5.82909 6.16279 6.25088 6.60473 6.65503 6.81393 6.90221 6.96401 7.03529 7.48158 7.75463 7.99269 8.03085 8.13878 8.42902 9.04194 9.20370 9.60620 11.05994 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048946 B = 0.005096 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.922269 B = 5492.895443 C = 5567.190571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.030 3.970 3 H 0.054 0.946 4 C -0.500 4.500 5 H 0.075 0.925 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.545 6.545 14 N -0.742 5.742 15 C 0.207 3.793 16 C 0.194 3.806 17 N -0.476 5.476 18 C -0.030 4.030 19 C -0.057 4.057 20 N -0.452 5.452 21 C 0.068 3.932 22 H 0.093 0.907 23 H 0.031 0.969 24 H 0.010 0.990 25 H 0.260 0.740 26 H 0.398 0.602 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.170 0.830 30 H 0.175 0.825 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.517 -1.303 -16.508 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 H 0.072 0.928 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.313 3.687 13 O -0.420 6.420 14 N -0.398 5.398 15 C 0.081 3.919 16 C -0.068 4.068 17 N -0.195 5.195 18 C -0.179 4.179 19 C -0.191 4.191 20 N -0.135 5.135 21 C -0.074 4.074 22 H 0.112 0.888 23 H 0.050 0.950 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.232 0.768 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.188 0.812 30 H 0.192 0.808 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.428 -1.730 -16.000 16.691 hybrid contribution -0.919 -0.265 0.298 1.002 sum -5.347 -1.995 -15.702 16.707 Atomic orbital electron populations 1.21738 0.96604 0.99687 1.00893 1.18879 0.94101 0.96980 0.89153 0.92838 1.21142 1.30949 1.12834 0.88939 0.90725 1.24955 0.95109 0.95084 0.99128 1.69872 1.37135 1.23112 1.23528 0.86443 0.78463 0.80230 0.82022 1.20639 1.21342 1.19754 1.22024 0.78368 0.84240 0.84115 1.90539 1.37879 1.26967 1.86636 1.46336 1.55746 1.32831 1.04857 1.19342 1.00167 0.93813 0.78541 1.23316 0.85803 0.98765 0.98888 1.70299 1.30266 1.11268 1.07656 1.22347 0.93122 1.03161 0.99240 1.22732 1.03496 0.97142 0.95721 1.45357 1.17874 1.27836 1.22426 1.22124 0.91936 0.90868 1.02510 0.88800 0.95026 0.97105 0.92973 0.76815 0.88958 0.90761 0.81230 0.80821 0.90004 0.89571 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.50 -14.20 8.37 -34.44 -0.29 -14.49 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.52 11.90 7.15 -10.98 -0.08 11.83 16 13 O -0.54 -14.06 15.46 5.56 0.09 -13.98 16 14 N -0.74 -13.30 5.44 -61.48 -0.33 -13.63 16 15 C 0.21 3.24 5.98 -5.20 -0.03 3.21 16 16 C 0.19 2.80 7.27 -155.42 -1.13 1.67 16 17 N -0.48 -7.45 11.25 -10.82 -0.12 -7.57 16 18 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 19 C -0.06 -0.59 11.58 -16.56 -0.19 -0.78 16 20 N -0.45 -5.15 3.15 -121.28 -0.38 -5.53 16 21 C 0.07 0.54 10.97 59.85 0.66 1.20 16 22 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.01 0.19 7.56 -51.93 -0.39 -0.20 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.40 6.64 7.88 -40.82 -0.32 6.32 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.07 1.08 7.06 -51.93 -0.37 0.71 16 29 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.72 7.04 -51.93 -0.37 0.36 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -33.16 284.98 -6.35 -39.51 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.21 Total: 3.30 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.28 Total: 1.42 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.21 Total: -51.35 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.16 -6.35 -39.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347394126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.512 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds