Wall clock time and date at job start Thu Apr 9 2020 12:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.47352 * 180.02562 * 16 15 14 18 18 C 1.39867 * 125.90170 * 124.99842 * 17 16 15 19 19 C 1.35317 * 107.92277 * 180.02562 * 18 17 16 20 20 N 1.34951 * 107.74395 * 359.97438 * 19 18 17 21 21 H 0.96999 * 126.03576 * 180.02562 * 20 19 18 22 22 N 1.30844 * 125.89730 * 304.69158 * 17 16 15 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 28 28 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 29 29 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 30 30 H 1.09002 * 109.46807 * 299.99867 * 16 15 14 31 31 H 1.08998 * 109.47285 * 60.00265 * 16 15 14 32 32 H 1.07999 * 126.03969 * 0.02562 * 18 17 16 33 33 H 1.08003 * 126.12841 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 1.6859 -0.2183 -4.9000 17 6 2.1881 -0.9287 -6.1305 18 6 1.3974 -1.4175 -7.1755 19 6 2.2186 -1.9870 -8.0879 20 7 3.4842 -1.8624 -7.6364 21 1 4.2838 -2.1793 -8.0849 22 7 3.4398 -1.1897 -6.4085 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 1.1493 0.5391 -2.5436 28 1 3.2855 -0.9395 -3.6507 29 1 1.8325 -1.9678 -3.6511 30 1 0.5959 -0.2184 -4.9003 31 1 2.0492 0.8093 -4.8996 32 1 0.3215 -1.3519 -7.2425 33 1 1.9154 -2.4570 -9.0118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350300590.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:47 Heat of formation + Delta-G solvation = 23.217899 kcal Electronic energy + Delta-G solvation = -16030.861925 eV Core-core repulsion = 13285.844516 eV Total energy + Delta-G solvation = -2745.017408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.29190 -38.68147 -35.12527 -33.64506 -32.49792 -30.49526 -30.10908 -28.74819 -25.06860 -24.01655 -22.04244 -21.32818 -20.00786 -19.00521 -18.27700 -16.26860 -15.89372 -15.33932 -14.96617 -14.60747 -14.25794 -13.99105 -13.69660 -13.34233 -12.96549 -12.41528 -12.35600 -11.86761 -11.54672 -11.26596 -10.96147 -10.68116 -10.64476 -10.59807 -10.18054 -9.89888 -9.53185 -8.90951 -8.89981 -8.52951 -8.32536 -8.24737 -5.97068 -3.99549 1.73095 2.60966 2.72241 3.38369 3.43673 3.51323 3.85371 3.98687 4.51937 4.60000 4.65193 5.08083 5.22372 5.36200 5.38964 5.58101 5.64215 5.80023 6.10272 6.19344 6.42561 6.48315 6.69303 6.90528 7.00453 7.09378 7.19163 7.52850 7.55548 7.82892 8.06413 8.23399 8.55038 9.09819 9.35490 9.65853 11.10652 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.061617 B = 0.004177 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.309162 B = 6701.915493 C = 6991.300801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.028 3.972 3 H 0.053 0.947 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.287 1.287 12 C 0.519 3.481 13 O -0.547 6.547 14 N -0.748 5.748 15 C 0.127 3.873 16 C -0.051 4.051 17 C 0.085 3.915 18 C -0.268 4.268 19 C 0.054 3.946 20 N -0.480 5.480 21 H 0.438 0.562 22 N -0.286 5.286 23 H 0.012 0.988 24 H 0.030 0.970 25 H 0.092 0.908 26 H 0.260 0.740 27 H 0.396 0.604 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -1.251 -20.430 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.213 1.213 12 C 0.308 3.692 13 O -0.423 6.423 14 N -0.403 5.403 15 C 0.002 3.998 16 C -0.090 4.090 17 C -0.083 4.083 18 C -0.297 4.297 19 C -0.094 4.094 20 N -0.188 5.188 21 H 0.282 0.718 22 N -0.110 5.110 23 H 0.031 0.969 24 H 0.050 0.950 25 H 0.111 0.889 26 H 0.070 0.930 27 H 0.229 0.771 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.166 0.834 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.369 -1.775 -19.811 19.893 hybrid contribution -0.469 -0.357 0.029 0.591 sum -0.101 -2.133 -19.782 19.897 Atomic orbital electron populations 1.21736 0.96556 0.99776 1.00897 1.18876 0.94147 0.96859 0.89410 0.92971 1.21170 1.30795 1.12725 0.89059 0.90814 1.24951 0.95196 0.95077 0.99080 1.69875 1.37316 1.23129 1.23433 0.86459 0.79466 0.79233 0.82096 1.20711 1.19758 1.21338 1.21950 0.78475 0.84295 0.84469 1.90531 1.37958 1.26978 1.86805 1.46270 1.55631 1.32694 1.05661 1.21077 0.99522 0.96030 0.83142 1.20238 1.01216 0.98849 0.88740 1.22174 0.90662 0.98610 0.96832 1.21486 1.00944 1.10722 0.96563 1.22583 0.85081 1.01305 1.00394 1.46381 1.07740 1.47067 1.17612 0.71843 1.77381 1.20202 1.15795 0.97608 0.96856 0.95046 0.88914 0.93037 0.77077 0.91596 0.92216 0.89233 0.89471 0.83382 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.47 16 3 H 0.05 1.37 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.53 8.37 -34.44 -0.29 -14.82 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.58 11.32 55.43 0.63 -24.96 16 8 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.52 12.30 7.15 -10.99 -0.08 12.22 16 13 O -0.55 -15.01 15.46 5.56 0.09 -14.92 16 14 N -0.75 -13.42 5.45 -60.30 -0.33 -13.75 16 15 C 0.13 2.04 5.64 -4.04 -0.02 2.02 16 16 C -0.05 -0.60 5.91 -27.88 -0.16 -0.76 16 17 C 0.08 1.05 6.49 -82.40 -0.53 0.52 16 18 C -0.27 -2.66 10.72 -40.01 -0.43 -3.09 16 19 C 0.05 0.43 11.99 -17.22 -0.21 0.22 16 20 N -0.48 -4.53 7.36 30.45 0.22 -4.31 16 21 H 0.44 2.66 8.96 -182.61 -1.64 1.03 16 22 N -0.29 -3.85 12.67 33.67 0.43 -3.42 16 23 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.40 5.92 7.89 -40.82 -0.32 5.60 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.09 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.18 0.66 8.06 -52.48 -0.42 0.23 16 LS Contribution 286.69 15.07 4.32 4.32 Total: -1.00 -34.97 286.69 -6.94 -41.91 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.54 Total: 2.34 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.73 Total: -4.42 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.95 Total: -46.44 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.09 Total: -14.92 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.97 -6.94 -41.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350300590.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.128 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds