Wall clock time and date at job start Thu Apr 9 2020 12:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46705 * 2 1 4 4 C 1.47195 * 109.47523 * 240.00053 * 2 1 3 5 5 N 2.60797 * 109.47553 * 239.99795 * 2 1 3 6 6 C 1.50702 * 109.47217 * 119.98959 * 2 1 3 7 7 O 1.21280 * 119.99263 * 103.76762 * 6 2 1 8 8 N 1.34774 * 120.00337 * 283.77734 * 6 2 1 9 9 C 1.46496 * 119.99659 * 185.13013 * 8 6 2 10 10 C 1.46495 * 120.00020 * 5.13180 * 8 6 2 11 11 C 1.53951 * 113.74362 * 142.23927 * 10 8 6 12 12 N 1.47813 * 86.03169 * 90.88031 * 11 10 8 13 13 C 1.36939 * 134.45187 * 204.64060 * 12 11 10 14 14 H 1.08000 * 120.00242 * 179.87116 * 13 12 11 15 15 C 1.38813 * 119.99808 * 359.87442 * 13 12 11 16 16 N 1.31616 * 120.00336 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99884 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47159 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47215 * 119.99585 * 17 15 13 20 20 H 1.48502 * 109.47225 * 240.00047 * 17 15 13 21 21 C 1.47574 * 91.05484 * 24.54944 * 12 11 10 22 22 H 1.08997 * 109.47460 * 304.56689 * 1 2 3 23 23 H 1.09002 * 109.47032 * 64.56802 * 1 2 3 24 24 H 1.09003 * 109.46543 * 184.55935 * 1 2 3 25 25 H 1.09001 * 109.47193 * 274.35993 * 9 8 6 26 26 H 1.08996 * 109.47659 * 34.35949 * 9 8 6 27 27 H 1.09000 * 109.47010 * 154.36740 * 9 8 6 28 28 H 1.09000 * 112.94705 * 10.64321 * 10 8 6 29 29 H 1.09001 * 113.76423 * 205.14266 * 11 10 8 30 30 H 1.09001 * 113.76464 * 336.54123 * 11 10 8 31 31 H 0.97001 * 120.00142 * 180.02562 * 16 15 13 32 32 H 1.08999 * 113.77225 * 221.14327 * 21 12 11 33 33 H 1.09004 * 113.76938 * 89.75573 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0208 -0.6939 -1.2018 5 7 2.3995 -1.2295 -2.1293 6 6 2.0324 -0.7102 1.2306 7 8 2.4702 -1.8379 1.1435 8 7 1.9950 -0.0923 2.4278 9 6 2.5852 -0.7369 3.6034 10 6 1.3641 1.2239 2.5534 11 6 0.5824 1.4139 3.8660 12 7 1.8456 1.9436 4.4216 13 6 2.3714 2.0436 5.6820 14 1 3.3470 2.4836 5.8268 15 6 1.6505 1.5793 6.7736 16 7 0.4613 1.0434 6.5973 17 14 2.3681 1.7151 8.4930 18 1 3.7086 2.3500 8.4212 19 1 1.4722 2.5436 9.3393 20 1 2.4942 0.3591 9.0853 21 6 2.3131 2.3189 3.0731 22 1 -0.3634 0.5830 0.8462 23 1 -0.3633 0.4413 -0.9281 24 1 -0.3632 -1.0245 0.0817 25 1 1.8545 -1.4078 4.0552 26 1 3.4642 -1.3068 3.3025 27 1 2.8759 0.0242 4.3275 28 1 0.8050 1.5138 1.6637 29 1 -0.2136 2.1556 3.7997 30 1 0.2577 0.4791 4.3231 31 1 -0.0426 0.7193 7.3602 32 1 3.3676 2.1057 2.8985 33 1 2.0265 3.3271 2.7736 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499646683.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:04 Heat of formation + Delta-G solvation = 60.834984 kcal Electronic energy + Delta-G solvation = -17107.539577 eV Core-core repulsion = 14364.153368 eV Total energy + Delta-G solvation = -2743.386209 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23979 -38.07514 -36.48173 -34.05245 -33.12058 -32.01556 -27.99270 -26.62999 -25.03255 -24.93050 -23.23908 -20.67480 -19.21470 -17.47081 -17.04559 -16.62502 -15.41619 -15.19725 -14.79108 -14.32141 -14.21520 -13.75339 -13.18913 -12.89781 -12.80745 -12.69906 -12.33174 -12.07497 -11.88334 -11.54489 -11.46790 -11.31162 -11.28985 -10.92278 -10.65937 -10.32594 -9.98679 -9.68698 -9.57832 -8.91325 -8.16948 -7.00345 -5.90150 -3.23739 2.54682 2.64061 2.84574 3.31730 3.38445 3.39478 3.40584 3.85242 4.33417 4.53036 4.79492 4.91737 4.93889 5.21574 5.32756 5.45550 5.51889 5.66419 5.96121 5.99427 6.12630 6.29953 6.36961 6.39342 6.72114 6.91719 6.96241 7.09360 7.41414 7.51277 7.80196 7.86969 8.33091 8.91313 9.57632 10.42112 11.26056 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.048356 B = 0.006206 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.899395 B = 4510.637948 C = 4663.449102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.015 4.015 3 H 0.137 0.863 4 C 0.230 3.770 5 N -0.425 5.425 6 C 0.518 3.482 7 O -0.543 6.543 8 N -0.568 5.568 9 C 0.082 3.918 10 C 0.067 3.933 11 C 0.154 3.846 12 N -0.607 5.607 13 C -0.229 4.229 14 H 0.081 0.919 15 C -0.001 4.001 16 N -0.917 5.917 17 Si 0.909 3.091 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.103 3.897 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.255 0.745 32 H 0.049 0.951 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 2.299 -8.884 9.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.040 4.040 3 H 0.154 0.846 4 C -0.089 4.089 5 N -0.100 5.100 6 C 0.303 3.697 7 O -0.421 6.421 8 N -0.298 5.298 9 C -0.060 4.060 10 C -0.038 4.038 11 C 0.028 3.972 12 N -0.334 5.334 13 C -0.356 4.356 14 H 0.099 0.901 15 C -0.199 4.199 16 N -0.563 5.563 17 Si 0.739 3.261 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.216 1.216 21 C -0.024 4.024 22 H 0.110 0.890 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.113 0.887 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.621 0.848 -9.940 9.996 hybrid contribution 0.095 0.534 1.500 1.595 sum -0.526 1.382 -8.441 8.569 Atomic orbital electron populations 1.21907 0.89498 1.04583 1.04493 1.18915 0.99036 1.00121 0.85887 0.84562 1.28208 0.93453 0.93461 0.93809 1.81146 1.08233 1.08256 1.12399 1.19877 0.79483 0.86282 0.84066 1.90735 1.47239 1.18256 1.85821 1.47403 1.55794 1.18546 1.08041 1.21924 0.97093 0.99568 0.87372 1.23378 0.96916 0.83055 1.00473 1.22677 0.89410 0.99097 0.86036 1.46146 1.16440 1.69960 1.00902 1.19019 1.00249 1.34925 0.81414 0.90128 1.24755 0.96418 1.00953 0.97742 1.69794 1.12011 1.44924 1.29602 0.86105 0.78131 0.77420 0.84432 1.20449 1.21731 1.21604 1.23056 0.97450 0.95082 0.86804 0.89031 0.90482 0.90967 0.93079 0.92746 0.86372 0.88722 0.94137 0.89954 0.93514 0.93242 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.81 37.16 0.33 -0.94 16 2 C -0.02 -0.17 2.24 -94.56 -0.21 -0.38 16 3 H 0.14 1.09 7.36 -51.93 -0.38 0.71 16 4 C 0.23 3.18 13.94 -20.76 -0.29 2.89 16 5 N -0.42 -6.89 18.54 42.15 0.78 -6.11 16 6 C 0.52 8.05 6.86 -10.99 -0.08 7.98 16 7 O -0.54 -10.61 15.83 5.56 0.09 -10.53 16 8 N -0.57 -9.18 3.09 -175.76 -0.54 -9.72 16 9 C 0.08 1.52 9.36 59.84 0.56 2.08 16 10 C 0.07 0.99 3.79 -70.15 -0.27 0.72 16 11 C 0.15 3.00 6.77 -2.83 -0.02 2.99 16 12 N -0.61 -13.22 2.27 -177.90 -0.40 -13.63 16 13 C -0.23 -5.70 9.70 -15.06 -0.15 -5.85 16 14 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 15 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 16 N -0.92 -24.73 11.39 55.49 0.63 -24.10 16 17 Si 0.91 20.68 29.55 -169.99 -5.02 15.66 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.10 1.72 8.41 -2.97 -0.02 1.69 16 22 H 0.09 0.72 5.93 -51.93 -0.31 0.42 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.98 7.64 -51.93 -0.40 0.58 16 27 H 0.12 2.47 5.15 -51.93 -0.27 2.21 16 28 H 0.10 1.00 4.48 -51.93 -0.23 0.77 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.86 6.87 -51.93 -0.36 1.50 16 31 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 279.81 15.07 4.22 4.22 Total: -1.00 -30.89 279.81 -4.52 -35.41 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.03 Total: -2.27 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -0.24 Total: 11.06 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.47 Total: -53.56 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.89 -4.52 -35.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499646683.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.248 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds