Wall clock time and date at job start Thu Apr 9 2020 12:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34784 * 120.00248 * 2 1 4 4 O 1.21288 * 120.00200 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99425 * 0.27054 * 3 2 1 6 6 C 1.53004 * 109.46559 * 179.72424 * 5 3 2 7 7 C 1.50708 * 109.46753 * 180.02562 * 6 5 3 8 8 H 1.07997 * 119.99998 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99543 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99653 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00313 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47298 * 89.99668 * 11 9 7 13 13 H 1.48500 * 109.47256 * 209.99543 * 11 9 7 14 14 H 1.48500 * 109.47147 * 329.99883 * 11 9 7 15 15 C 1.39472 * 119.99989 * 179.97438 * 2 1 3 16 16 C 1.36110 * 126.21932 * 94.93346 * 15 2 1 17 17 C 1.39756 * 107.82991 * 179.84300 * 16 15 2 18 18 N 1.30849 * 108.32198 * 0.42636 * 17 16 15 19 19 N 1.35265 * 126.21406 * 275.24512 * 15 2 1 20 20 C 1.46493 * 126.04991 * 359.97438 * 19 15 2 21 21 H 1.09004 * 109.46325 * 84.81733 * 1 2 3 22 22 H 1.09001 * 109.47305 * 204.81541 * 1 2 3 23 23 H 1.08996 * 109.47007 * 324.81990 * 1 2 3 24 24 H 1.09001 * 109.47605 * 299.72398 * 5 3 2 25 25 H 1.09004 * 109.47157 * 59.73295 * 5 3 2 26 26 H 1.08995 * 109.47327 * 299.99577 * 6 5 3 27 27 H 1.08995 * 109.46823 * 60.00295 * 6 5 3 28 28 H 0.96997 * 120.00034 * 180.02562 * 10 9 7 29 29 H 1.07997 * 126.08384 * 0.02562 * 16 15 2 30 30 H 1.07994 * 125.83978 * 180.16367 * 17 16 15 31 31 H 1.09001 * 109.47198 * 94.97304 * 20 19 15 32 32 H 1.09002 * 109.47402 * 214.97734 * 20 19 15 33 33 H 1.09008 * 109.46955 * 334.97379 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3519 1.1672 0.0005 5 6 1.3854 2.4723 0.0062 6 6 2.3797 3.6352 0.0118 7 6 1.6262 4.9403 0.0186 8 1 0.5462 4.9403 0.0193 9 6 2.3156 6.1343 0.0250 10 7 1.6581 7.2732 0.0314 11 14 4.1836 6.1343 0.0245 12 1 4.6783 6.1419 -1.3757 13 1 4.6788 7.3430 0.7310 14 1 4.6787 4.9180 0.7177 15 6 2.1624 -1.2079 0.0005 16 6 2.6463 -1.8576 -1.0932 17 6 3.2797 -3.0231 -0.6531 18 7 3.1753 -3.0810 0.6499 19 7 2.4755 -1.9493 1.0876 20 6 2.1424 -1.6258 2.4770 21 1 -0.3632 0.0928 -1.0236 22 1 -0.3634 -0.9328 0.4313 23 1 -0.3633 0.8399 0.5921 24 1 0.7588 2.5343 -0.8836 25 1 0.7588 2.5258 0.8965 26 1 3.0063 3.5732 0.9015 27 1 3.0064 3.5816 -0.8784 28 1 2.1431 8.1132 0.0355 29 1 2.5591 -1.5293 -2.1183 30 1 3.7677 -3.7533 -1.2814 31 1 1.2169 -2.1297 2.7556 32 1 2.9484 -1.9586 3.1310 33 1 2.0140 -0.5480 2.5783 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538212056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:13 Heat of formation + Delta-G solvation = 48.755519 kcal Electronic energy + Delta-G solvation = -16641.039847 eV Core-core repulsion = 13897.129833 eV Total energy + Delta-G solvation = -2743.910014 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.45898 -39.34286 -35.55985 -33.62956 -33.19868 -31.47463 -29.61365 -26.94683 -26.81075 -26.07294 -22.40471 -21.22663 -20.29825 -18.90716 -17.53692 -17.17791 -16.15541 -15.69619 -15.25892 -15.12348 -14.12039 -14.02973 -13.83305 -13.40619 -13.14781 -12.78365 -12.64925 -12.57531 -12.52086 -12.44620 -11.47604 -11.04631 -10.88723 -10.25372 -10.13944 -9.86895 -9.58634 -9.31807 -9.25213 -9.04708 -8.57320 -8.55989 -6.08385 -4.07852 1.70357 2.19304 2.74802 2.82896 3.08237 3.34348 3.41338 3.51485 4.46188 4.48065 4.88589 5.01555 5.05918 5.10279 5.25195 5.27391 5.30633 5.49189 5.54131 5.58304 5.89165 5.94155 6.04727 6.10138 6.51448 6.57873 7.08310 7.25733 7.27356 7.33032 7.62108 7.71393 8.32622 8.46664 8.93648 9.54397 11.04254 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039976 B = 0.005620 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.252803 B = 4981.419237 C = 5212.091970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.572 5.572 3 C 0.515 3.485 4 O -0.516 6.516 5 C -0.115 4.115 6 C 0.000 4.000 7 C -0.526 4.526 8 H 0.074 0.926 9 C 0.071 3.929 10 N -0.902 5.902 11 Si 0.876 3.124 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.262 1.262 15 C 0.311 3.689 16 C -0.257 4.257 17 C 0.051 3.949 18 N -0.289 5.289 19 N -0.373 5.373 20 C 0.100 3.900 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.264 0.736 29 H 0.149 0.851 30 H 0.186 0.814 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 -18.597 0.996 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.308 5.308 3 C 0.306 3.694 4 O -0.388 6.388 5 C -0.155 4.155 6 C -0.038 4.038 7 C -0.564 4.564 8 H 0.092 0.908 9 C -0.131 4.131 10 N -0.540 5.540 11 Si 0.703 3.297 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.186 1.186 15 C 0.094 3.906 16 C -0.288 4.288 17 C -0.134 4.134 18 N -0.113 5.113 19 N -0.159 5.159 20 C -0.041 4.041 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.167 0.833 30 H 0.203 0.797 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.278 -18.971 2.202 19.234 hybrid contribution 0.641 0.596 -0.701 1.121 sum -1.637 -18.375 1.502 18.509 Atomic orbital electron populations 1.21924 0.77422 1.03354 1.03173 1.45291 1.07111 1.02244 1.76138 1.21966 0.88542 0.84935 0.73945 1.90710 1.14424 1.86805 1.46823 1.21736 1.00291 0.89776 1.03671 1.19416 0.94428 0.92132 0.97807 1.21055 0.94953 0.88692 1.51708 0.90811 1.24949 0.98445 0.95440 0.94225 1.69901 1.35882 0.97457 1.50781 0.86821 0.86208 0.77848 0.78839 1.20141 1.21356 1.18623 1.17821 0.98066 0.87195 0.87492 1.21257 1.10121 0.98514 0.98903 1.23643 0.99497 0.98101 0.92135 1.77373 1.15977 1.04609 1.13298 1.48942 1.43085 1.17315 1.06519 1.21814 1.01996 1.02132 0.78207 0.91389 0.91308 0.89676 0.88972 0.89171 0.95842 0.96107 0.92631 0.83321 0.79724 0.90720 0.89302 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.14 59.85 0.61 1.42 16 2 N -0.57 -8.21 2.86 -122.81 -0.35 -8.56 16 3 C 0.52 9.39 7.64 -10.98 -0.08 9.31 16 4 O -0.52 -11.66 15.95 5.55 0.09 -11.58 16 5 C -0.11 -2.12 4.26 -27.88 -0.12 -2.24 16 6 C 0.00 0.00 3.33 -27.88 -0.09 -0.09 16 7 C -0.53 -14.63 9.66 -34.44 -0.33 -14.96 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 11 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 15 C 0.31 4.68 5.64 -153.16 -0.86 3.81 16 16 C -0.26 -3.62 10.84 -39.78 -0.43 -4.05 16 17 C 0.05 0.66 12.01 -17.40 -0.21 0.45 16 18 N -0.29 -4.23 12.56 30.60 0.38 -3.85 16 19 N -0.37 -5.36 4.02 -67.18 -0.27 -5.63 16 20 C 0.10 1.08 11.43 59.84 0.68 1.76 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.07 0.56 8.01 -51.93 -0.42 0.15 16 23 H 0.08 0.75 6.65 -51.93 -0.35 0.40 16 24 H 0.09 1.55 8.11 -51.93 -0.42 1.12 16 25 H 0.09 1.48 7.41 -51.93 -0.38 1.09 16 26 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 27 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.95 7.99 -51.92 -0.41 0.53 16 LS Contribution 287.69 15.07 4.34 4.34 Total: -1.00 -35.39 287.69 -5.09 -40.48 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -4.44 Total: -3.55 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -0.94 Total: -2.61 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.54 Total: -44.72 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.39 -5.09 -40.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538212056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.240 kcal (2) G-P(sol) polarization free energy of solvation -35.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds