Wall clock time and date at job start Thu Apr 9 2020 12:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34784 * 120.00248 * 2 1 4 4 O 1.21288 * 120.00200 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99425 * 0.27054 * 3 2 1 6 6 C 1.53004 * 109.46559 * 179.72424 * 5 3 2 7 7 C 1.50708 * 109.46753 * 180.02562 * 6 5 3 8 8 H 1.07997 * 119.99998 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99543 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99653 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00313 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47298 * 89.99668 * 11 9 7 13 13 H 1.48500 * 109.47256 * 209.99543 * 11 9 7 14 14 H 1.48500 * 109.47147 * 329.99883 * 11 9 7 15 15 C 1.39472 * 119.99989 * 179.97438 * 2 1 3 16 16 C 1.36110 * 126.21932 * 94.93346 * 15 2 1 17 17 C 1.39756 * 107.82991 * 179.84300 * 16 15 2 18 18 N 1.30849 * 108.32198 * 0.42636 * 17 16 15 19 19 N 1.35265 * 126.21406 * 275.24512 * 15 2 1 20 20 C 1.46493 * 126.04991 * 359.97438 * 19 15 2 21 21 H 1.09004 * 109.46325 * 84.81733 * 1 2 3 22 22 H 1.09001 * 109.47305 * 204.81541 * 1 2 3 23 23 H 1.08996 * 109.47007 * 324.81990 * 1 2 3 24 24 H 1.09001 * 109.47605 * 299.72398 * 5 3 2 25 25 H 1.09004 * 109.47157 * 59.73295 * 5 3 2 26 26 H 1.08995 * 109.47327 * 299.99577 * 6 5 3 27 27 H 1.08995 * 109.46823 * 60.00295 * 6 5 3 28 28 H 0.96997 * 120.00034 * 180.02562 * 10 9 7 29 29 H 1.07997 * 126.08384 * 0.02562 * 16 15 2 30 30 H 1.07994 * 125.83978 * 180.16367 * 17 16 15 31 31 H 1.09001 * 109.47198 * 94.97304 * 20 19 15 32 32 H 1.09002 * 109.47402 * 214.97734 * 20 19 15 33 33 H 1.09008 * 109.46955 * 334.97379 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3519 1.1672 0.0005 5 6 1.3854 2.4723 0.0062 6 6 2.3797 3.6352 0.0118 7 6 1.6262 4.9403 0.0186 8 1 0.5462 4.9403 0.0193 9 6 2.3156 6.1343 0.0250 10 7 1.6581 7.2732 0.0314 11 14 4.1836 6.1343 0.0245 12 1 4.6783 6.1419 -1.3757 13 1 4.6788 7.3430 0.7310 14 1 4.6787 4.9180 0.7177 15 6 2.1624 -1.2079 0.0005 16 6 2.6463 -1.8576 -1.0932 17 6 3.2797 -3.0231 -0.6531 18 7 3.1753 -3.0810 0.6499 19 7 2.4755 -1.9493 1.0876 20 6 2.1424 -1.6258 2.4770 21 1 -0.3632 0.0928 -1.0236 22 1 -0.3634 -0.9328 0.4313 23 1 -0.3633 0.8399 0.5921 24 1 0.7588 2.5343 -0.8836 25 1 0.7588 2.5258 0.8965 26 1 3.0063 3.5732 0.9015 27 1 3.0064 3.5816 -0.8784 28 1 2.1431 8.1132 0.0355 29 1 2.5591 -1.5293 -2.1183 30 1 3.7677 -3.7533 -1.2814 31 1 1.2169 -2.1297 2.7556 32 1 2.9484 -1.9586 3.1310 33 1 2.0140 -0.5480 2.5783 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538212056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:13 Heat of formation + Delta-G solvation = 24.917894 kcal Electronic energy + Delta-G solvation = -16642.073524 eV Core-core repulsion = 13897.129833 eV Total energy + Delta-G solvation = -2744.943691 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.53021 -40.67926 -36.80107 -35.61081 -34.16828 -33.38797 -30.76961 -28.27292 -27.85324 -27.38887 -24.02957 -22.24622 -21.80597 -20.14627 -19.21110 -18.52545 -17.65924 -16.97927 -16.39548 -16.28821 -16.08101 -15.25097 -15.05123 -14.68621 -14.51991 -14.28872 -13.92692 -13.64904 -13.50702 -13.39881 -13.26058 -12.94249 -12.13436 -12.00665 -11.93527 -11.79663 -11.41284 -11.05372 -10.78295 -10.40871 -10.16950 -9.62031 -8.31722 -6.34132 0.62851 1.13888 1.31906 1.34849 1.47103 1.48424 1.76515 2.01712 2.33940 3.04405 3.56315 3.68507 4.10519 4.23284 4.27773 4.30886 4.38960 4.49880 4.50799 4.54353 4.65559 4.81392 4.95978 5.03279 5.08978 5.32237 5.40409 5.58901 5.62377 6.00173 6.05144 6.23587 6.59886 6.72218 7.01596 7.31431 8.83691 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039976 B = 0.005620 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.252803 B = 4981.419237 C = 5212.091970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.559 5.559 3 C 0.521 3.479 4 O -0.569 6.569 5 C -0.106 4.106 6 C 0.003 3.997 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.018 3.982 10 N -0.941 5.941 11 Si 0.932 3.068 12 H -0.270 1.270 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.289 3.711 16 C -0.270 4.270 17 C 0.055 3.945 18 N -0.311 5.311 19 N -0.381 5.381 20 C 0.093 3.907 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.098 0.902 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.008 0.992 27 H 0.007 0.993 28 H 0.267 0.733 29 H 0.157 0.843 30 H 0.221 0.779 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 -20.178 0.921 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.292 5.292 3 C 0.312 3.688 4 O -0.446 6.446 5 C -0.145 4.145 6 C -0.035 4.035 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.180 4.180 10 N -0.582 5.582 11 Si 0.757 3.243 12 H -0.195 1.195 13 H -0.204 1.204 14 H -0.189 1.189 15 C 0.072 3.928 16 C -0.301 4.301 17 C -0.129 4.129 18 N -0.135 5.135 19 N -0.167 5.167 20 C -0.047 4.047 21 H 0.102 0.898 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.175 0.825 30 H 0.238 0.762 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.679 -20.587 2.138 20.871 hybrid contribution 0.658 1.021 -0.682 1.393 sum -2.021 -19.566 1.456 19.724 Atomic orbital electron populations 1.22274 0.74492 1.05082 1.04751 1.45127 1.08668 1.01084 1.74364 1.21734 0.87708 0.85862 0.73456 1.90690 1.16495 1.87647 1.49727 1.21549 0.99091 0.88034 1.05845 1.19265 0.95046 0.92840 0.96370 1.21374 0.94528 0.90214 1.50183 0.92494 1.25713 1.02540 0.95368 0.94387 1.70004 1.37560 0.98132 1.52475 0.85931 0.81452 0.77852 0.79079 1.19492 1.20408 1.18882 1.18063 0.99024 0.87446 0.88302 1.21565 1.10145 0.99075 0.99313 1.24235 0.98583 0.98225 0.91856 1.77340 1.16593 1.05254 1.14294 1.49188 1.42940 1.17162 1.07360 1.22041 1.03583 1.02143 0.76948 0.89798 0.89324 0.88389 0.86952 0.86825 0.97322 0.97414 0.92376 0.82498 0.76247 0.87964 0.88747 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 10.14 127.77 1.30 2.52 16 2 N -0.56 -14.93 2.86 -660.84 -1.89 -16.82 16 3 C 0.52 18.34 7.64 87.66 0.67 19.01 16 4 O -0.57 -25.65 15.95 -3.06 -0.05 -25.70 16 5 C -0.11 -3.72 4.26 29.85 0.13 -3.59 16 6 C 0.00 0.13 3.33 29.85 0.10 0.23 16 7 C -0.52 -29.14 9.66 25.60 0.25 -28.89 16 8 H 0.06 3.28 7.99 -2.91 -0.02 3.26 16 9 C 0.02 1.04 5.47 84.65 0.46 1.50 16 10 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 11 Si 0.93 46.11 27.47 68.60 1.88 47.99 16 12 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.26 -13.09 6.54 99.48 0.65 -12.44 16 15 C 0.29 8.22 5.64 131.32 0.74 8.96 16 16 C -0.27 -7.16 10.84 22.14 0.24 -6.92 16 17 C 0.06 1.31 12.01 85.21 1.02 2.33 16 18 N -0.31 -8.59 12.56 -57.10 -0.72 -9.31 16 19 N -0.38 -10.33 4.02 -366.45 -1.47 -11.81 16 20 C 0.09 1.86 11.43 127.77 1.46 3.32 16 21 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.09 1.15 8.01 -2.39 -0.02 1.13 16 23 H 0.10 1.39 6.65 -2.39 -0.02 1.37 16 24 H 0.11 3.50 8.11 -2.39 -0.02 3.48 16 25 H 0.11 3.45 7.41 -2.39 -0.02 3.44 16 26 H 0.01 0.43 7.16 -2.39 -0.02 0.41 16 27 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.22 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.66 7.99 -2.38 -0.02 1.64 16 Total: -1.00 -76.39 287.69 5.46 -70.93 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.04 Total: 3.61 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 6.37 Total: -1.52 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -3.78 Total: -95.30 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.70 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Total: -76.39 5.46 -70.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538212056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.849 kcal (2) G-P(sol) polarization free energy of solvation -76.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds