Wall clock time and date at job start Thu Apr 9 2020 12:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46799 * 2 1 4 4 C 1.50698 * 109.46982 * 239.99814 * 2 1 3 5 5 H 1.07999 * 120.00146 * 239.99841 * 4 2 1 6 6 C 1.37884 * 119.99804 * 60.00224 * 4 2 1 7 7 N 1.31512 * 120.00189 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99787 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47245 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46925 * 120.00551 * 8 6 4 11 11 H 1.48509 * 109.46894 * 239.99632 * 8 6 4 12 12 C 1.50698 * 109.46803 * 120.00352 * 2 1 3 13 13 O 1.21293 * 120.00411 * 120.00402 * 12 2 1 14 14 N 1.34782 * 120.00103 * 299.99376 * 12 2 1 15 15 C 1.46500 * 119.99564 * 0.02562 * 14 12 2 16 16 C 1.39467 * 119.99940 * 180.02562 * 14 12 2 17 17 C 1.36109 * 126.21711 * 265.80201 * 16 14 12 18 18 C 1.39759 * 107.82696 * 179.90929 * 17 16 14 19 19 N 1.30847 * 108.32483 * 0.36290 * 18 17 16 20 20 N 1.35264 * 126.21599 * 86.11623 * 16 14 12 21 21 C 1.46504 * 126.04719 * 359.96200 * 20 16 14 22 22 H 1.09000 * 109.46904 * 299.99684 * 1 2 3 23 23 H 1.09004 * 109.47325 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47015 * 60.00068 * 1 2 3 25 25 H 0.96998 * 120.00287 * 180.02562 * 7 6 4 26 26 H 1.08996 * 109.47376 * 92.16853 * 15 14 12 27 27 H 1.09004 * 109.46508 * 212.16549 * 15 14 12 28 28 H 1.08995 * 109.47269 * 332.15923 * 15 14 12 29 29 H 1.07995 * 126.08354 * 0.02562 * 17 16 14 30 30 H 1.08002 * 125.84044 * 180.14649 * 18 17 16 31 31 H 1.08998 * 109.47356 * 94.77355 * 21 20 16 32 32 H 1.08997 * 109.47311 * 214.77908 * 21 20 16 33 33 H 1.09000 * 109.46714 * 334.77940 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1483 -2.2856 -3.6038 10 1 1.1677 -1.5865 -4.8166 11 1 3.1472 -0.1857 -4.8162 12 6 2.0323 -0.7105 1.2304 13 8 2.7297 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 0.8642 0.9409 2.5890 16 6 2.1720 -0.9073 3.5933 17 6 1.5084 -1.8652 4.2965 18 6 2.3259 -2.2592 5.3594 19 7 3.4331 -1.5640 5.3065 20 7 3.3623 -0.7043 4.2029 21 6 4.3948 0.2466 3.7833 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 0.7081 1.1609 -3.4844 26 1 -0.1810 0.6402 2.6612 27 1 1.1481 1.4871 3.4885 28 1 0.9987 1.5814 1.7174 29 1 0.5259 -2.2532 4.0719 30 1 2.0836 -3.0070 6.1001 31 1 4.2751 1.1795 4.3341 32 1 5.3798 -0.1726 3.9882 33 1 4.2975 0.4405 2.7151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001623784368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:20 Heat of formation + Delta-G solvation = 35.534352 kcal Electronic energy + Delta-G solvation = -17180.956111 eV Core-core repulsion = 14436.472784 eV Total energy + Delta-G solvation = -2744.483327 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.48218 -40.59640 -36.68307 -35.87006 -34.14457 -32.69009 -30.31932 -27.97976 -27.66407 -27.12117 -24.86120 -22.30977 -22.12332 -20.13837 -18.64960 -18.09155 -17.68967 -16.78310 -16.42882 -16.19338 -15.91849 -15.10996 -14.86491 -14.52144 -14.40600 -14.15194 -13.70042 -13.59420 -13.39558 -13.05026 -12.97397 -12.73797 -12.29373 -12.23855 -12.07742 -11.89577 -11.05493 -10.77988 -10.46410 -10.30147 -10.06051 -9.58429 -8.18369 -6.28656 0.67955 1.24897 1.37867 1.40919 1.53345 1.67986 1.79692 2.12640 2.43537 3.11501 3.58738 4.03656 4.16643 4.24983 4.27289 4.48676 4.50255 4.56284 4.63565 4.69750 4.82948 4.94841 5.02881 5.08740 5.19942 5.45042 5.67372 5.71796 5.82407 6.10672 6.13781 6.35135 6.64216 6.78237 7.24048 7.40678 8.87368 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038899 B = 0.006742 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.638324 B = 4151.985607 C = 4359.439783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.037 3.963 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.044 0.956 6 C 0.026 3.974 7 N -0.905 5.905 8 Si 0.952 3.048 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.528 3.472 13 O -0.572 6.572 14 N -0.564 5.564 15 C 0.080 3.920 16 C 0.291 3.709 17 C -0.273 4.273 18 C 0.058 3.942 19 N -0.312 5.312 20 N -0.382 5.382 21 C 0.097 3.903 22 H 0.070 0.930 23 H 0.019 0.981 24 H 0.074 0.926 25 H 0.267 0.733 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.160 0.840 30 H 0.225 0.775 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.202 2.507 12.942 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.016 3.984 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.063 0.937 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.778 3.222 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.198 1.198 12 C 0.320 3.680 13 O -0.448 6.448 14 N -0.298 5.298 15 C -0.060 4.060 16 C 0.074 3.926 17 C -0.304 4.304 18 C -0.127 4.127 19 N -0.136 5.136 20 N -0.167 5.167 21 C -0.044 4.044 22 H 0.088 0.912 23 H 0.038 0.962 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.177 0.823 30 H 0.241 0.759 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.324 2.454 13.201 13.431 hybrid contribution -0.322 -0.596 -1.485 1.632 sum 0.002 1.858 11.715 11.862 Atomic orbital electron populations 1.21857 0.94475 0.99769 1.02923 1.18772 0.95817 0.95873 0.87939 0.93035 1.21277 1.31945 1.12843 0.91158 0.93746 1.25499 0.95062 0.95680 1.01119 1.69920 1.36794 1.23289 1.24427 0.85601 0.78428 0.78586 0.79619 1.20859 1.19790 1.19782 1.22154 0.77642 0.83555 0.84614 1.90560 1.39317 1.28288 1.86685 1.45244 1.51828 1.30974 1.01732 1.22291 0.94699 0.84897 1.04138 1.18207 0.87753 0.97145 0.89502 1.21565 1.04527 1.03460 1.00853 1.24255 0.90242 0.99221 0.98944 1.77298 1.23505 1.07612 1.05159 1.49167 1.14111 1.31831 1.21612 1.21957 0.90366 0.91574 1.00494 0.91173 0.96198 0.90749 0.92401 0.89884 0.89480 0.89282 0.82287 0.75885 0.87960 0.88552 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.59 71.98 0.62 -5.11 16 2 C 0.04 1.80 1.83 -12.29 -0.02 1.77 16 3 H 0.05 2.52 7.41 -2.39 -0.02 2.50 16 4 C -0.53 -30.37 8.37 25.60 0.21 -30.16 16 5 H 0.04 2.75 6.75 -2.91 -0.02 2.73 16 6 C 0.03 1.44 5.30 84.66 0.45 1.88 16 7 N -0.91 -48.90 11.32 21.45 0.24 -48.65 16 8 Si 0.95 44.16 29.54 68.60 2.03 46.18 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 C 0.53 24.31 7.04 87.66 0.62 24.93 16 13 O -0.57 -31.34 15.43 -3.07 -0.05 -31.39 16 14 N -0.56 -20.09 2.87 -660.85 -1.89 -21.98 16 15 C 0.08 2.08 8.79 127.77 1.12 3.20 16 16 C 0.29 10.14 5.68 131.32 0.75 10.89 16 17 C -0.27 -8.45 10.84 22.14 0.24 -8.21 16 18 C 0.06 1.57 12.01 85.21 1.02 2.59 16 19 N -0.31 -9.91 12.56 -57.09 -0.72 -10.63 16 20 N -0.38 -12.61 4.02 -366.45 -1.47 -14.09 16 21 C 0.10 2.59 11.43 127.77 1.46 4.05 16 22 H 0.07 2.36 4.57 -2.39 -0.01 2.35 16 23 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 25 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 26 H 0.08 1.88 7.09 -2.39 -0.02 1.86 16 27 H 0.09 1.79 8.07 -2.39 -0.02 1.77 16 28 H 0.09 2.39 5.84 -2.39 -0.01 2.38 16 29 H 0.16 4.40 8.06 -2.91 -0.02 4.37 16 30 H 0.22 3.85 8.06 -2.91 -0.02 3.83 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.07 2.08 7.99 -2.39 -0.02 2.06 16 Total: -1.00 -70.76 279.58 5.72 -65.04 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.11 Total: 9.68 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.47 Total: 5.84 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.84 Total: -95.35 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.05 Total: -31.39 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.76 5.72 -65.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623784368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.575 kcal (2) G-P(sol) polarization free energy of solvation -70.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds