Wall clock time and date at job start Thu Apr 9 2020 12:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47003 * 2 1 4 4 C 1.52998 * 109.47013 * 239.99887 * 2 1 3 5 5 C 1.50694 * 109.47189 * 174.99832 * 4 2 1 6 6 C 1.39866 * 126.04243 * 269.69095 * 5 4 2 7 7 N 1.30838 * 108.20636 * 179.81570 * 6 5 4 8 8 N 1.40084 * 108.20236 * 0.44335 * 7 6 5 9 9 C 1.46498 * 126.04023 * 179.69552 * 8 7 6 10 10 C 1.34947 * 107.92645 * 359.71733 * 8 7 6 11 11 N 1.46502 * 109.47175 * 120.00387 * 2 1 3 12 12 C 1.34776 * 119.99355 * 274.99780 * 11 2 1 13 13 O 1.21687 * 120.00526 * 0.02562 * 12 11 2 14 14 C 1.46377 * 119.99584 * 180.02562 * 12 11 2 15 15 H 1.07995 * 120.00263 * 353.93394 * 14 12 11 16 16 C 1.40056 * 119.99695 * 173.93912 * 14 12 11 17 17 N 1.30666 * 120.00082 * 6.15333 * 16 14 12 18 18 Si 1.86799 * 119.99607 * 186.14787 * 16 14 12 19 19 H 1.48498 * 109.46827 * 94.98508 * 18 16 14 20 20 H 1.48501 * 109.47119 * 214.98546 * 18 16 14 21 21 H 1.48500 * 109.47665 * 334.98581 * 18 16 14 22 22 H 1.09003 * 109.47542 * 59.99775 * 1 2 3 23 23 H 1.08999 * 109.47487 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47370 * 299.99983 * 1 2 3 25 25 H 1.09002 * 109.47022 * 54.99630 * 4 2 1 26 26 H 1.09000 * 109.47496 * 295.00229 * 4 2 1 27 27 H 1.08002 * 125.89659 * 0.02562 * 6 5 4 28 28 H 1.09001 * 109.47289 * 270.02710 * 9 8 7 29 29 H 1.09000 * 109.46842 * 30.02064 * 9 8 7 30 30 H 1.09001 * 109.47693 * 150.02087 * 9 8 7 31 31 H 1.08000 * 126.13173 * 180.02562 * 10 8 7 32 32 H 0.96996 * 120.00166 * 94.99840 * 11 2 1 33 33 H 0.96996 * 120.00076 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6149 -1.3128 6 6 4.2690 0.3992 -1.9444 7 7 5.5432 0.1504 -1.7820 8 7 5.6673 -1.0371 -1.0494 9 6 6.9236 -1.6780 -0.6530 10 6 4.4252 -1.4869 -0.7738 11 7 2.0183 -0.6907 1.1961 12 6 2.1471 -0.0183 2.3571 13 8 1.8572 1.1623 2.4119 14 6 2.6355 -0.7082 3.5521 15 1 2.7995 -1.7754 3.5304 16 6 2.8901 0.0157 4.7237 17 7 2.5791 1.2832 4.7891 18 14 3.6742 -0.8307 6.1927 19 1 5.1431 -0.6153 6.1622 20 1 3.1166 -0.2633 7.4467 21 1 3.3861 -2.2865 6.1373 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6053 -0.2618 -2.1369 26 1 1.7516 -1.7715 -1.2056 27 1 3.8509 1.2438 -2.4720 28 1 7.2363 -2.3761 -1.4295 29 1 7.6924 -0.9173 -0.5173 30 1 6.7770 -2.2173 0.2829 31 1 4.1800 -2.3820 -0.2216 32 1 2.2490 -1.6318 1.1525 33 1 2.7558 1.7846 5.6004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627700080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:23 Heat of formation + Delta-G solvation = 29.245910 kcal Electronic energy + Delta-G solvation = -16774.488524 eV Core-core repulsion = 14029.732510 eV Total energy + Delta-G solvation = -2744.756014 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87903 -37.55902 -34.87863 -32.95895 -32.33918 -30.67952 -29.52843 -27.35082 -26.02389 -24.92178 -21.28401 -20.85525 -19.88793 -19.15438 -17.10843 -16.49327 -15.33616 -15.21842 -14.71350 -14.23510 -14.08773 -13.55771 -13.07220 -12.75728 -12.60135 -12.46092 -12.23066 -12.01526 -11.61366 -11.48795 -11.08863 -10.95198 -10.85602 -10.41454 -10.28345 -10.16721 -10.11562 -9.11360 -8.81290 -7.99104 -7.50967 -7.35863 -6.13925 -4.57810 2.20484 2.79993 3.13965 3.14129 3.21107 3.24303 4.13137 4.65522 4.73027 4.96378 5.12573 5.20542 5.34473 5.46781 5.57768 5.64744 5.71329 5.88333 6.08722 6.09805 6.19931 6.33230 6.37621 6.49654 6.83155 6.96353 7.02237 7.30130 7.47415 7.98373 8.02151 8.23636 8.41539 9.07670 9.65653 10.66742 10.88287 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.008143 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.645386 B = 3437.728440 C = 4366.495091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 H 0.074 0.926 4 C -0.045 4.045 5 C -0.222 4.222 6 C 0.051 3.949 7 N -0.306 5.306 8 N -0.379 5.379 9 C 0.105 3.895 10 C 0.066 3.934 11 N -0.756 5.756 12 C 0.559 3.441 13 O -0.581 6.581 14 C -0.548 4.548 15 H 0.065 0.935 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.903 3.097 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.265 1.265 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.178 0.822 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.169 0.831 32 H 0.374 0.626 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -7.893 -10.492 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.092 0.908 4 C -0.085 4.085 5 C -0.233 4.233 6 C -0.135 4.135 7 N -0.128 5.128 8 N -0.162 5.162 9 C -0.037 4.037 10 C -0.080 4.080 11 N -0.410 5.410 12 C 0.362 3.638 13 O -0.464 6.464 14 C -0.585 4.585 15 H 0.083 0.917 16 C -0.131 4.131 17 N -0.397 5.397 18 Si 0.728 3.272 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.190 1.190 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.195 0.805 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.186 0.814 32 H 0.205 0.795 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.806 -6.512 -10.527 13.279 hybrid contribution -0.251 -1.170 1.049 1.592 sum 4.555 -7.683 -9.478 13.023 Atomic orbital electron populations 1.22192 0.97274 1.00825 1.01429 1.20496 0.92157 0.97540 0.84970 0.90824 1.20218 0.89329 1.00735 0.98178 1.19979 0.96506 0.98287 1.08552 1.23711 0.90372 0.99358 1.00022 1.77246 1.19716 0.99940 1.15859 1.48316 1.05742 1.19015 1.43125 1.21780 0.83570 0.97742 1.00618 1.22237 0.84328 1.00750 1.00691 1.46082 1.72985 1.12377 1.09594 1.18136 0.77502 0.86361 0.81787 1.90589 1.54382 1.16626 1.84786 1.20880 1.47483 0.94870 0.95304 0.91719 1.25683 0.93818 0.94506 0.99100 1.70025 1.35327 1.07803 1.26554 0.86439 0.79592 0.80194 0.80967 1.19987 1.20478 1.18963 0.93380 0.93531 0.92062 0.90871 0.91675 0.80478 0.91273 0.89629 0.89464 0.81378 0.79472 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.48 37.16 0.35 -2.41 16 2 C 0.15 2.93 2.56 -67.93 -0.17 2.76 16 3 H 0.07 1.65 7.58 -51.93 -0.39 1.26 16 4 C -0.05 -0.66 5.24 -27.89 -0.15 -0.80 16 5 C -0.22 -3.51 5.10 -105.06 -0.54 -4.04 16 6 C 0.05 0.83 11.96 -17.37 -0.21 0.62 16 7 N -0.31 -5.29 12.58 30.62 0.39 -4.90 16 8 N -0.38 -5.82 4.01 -68.16 -0.27 -6.09 16 9 C 0.10 1.12 11.47 59.85 0.69 1.81 16 10 C 0.07 0.99 11.31 -17.22 -0.19 0.80 16 11 N -0.76 -16.57 4.70 -55.22 -0.26 -16.83 16 12 C 0.56 15.86 7.71 -12.99 -0.10 15.76 16 13 O -0.58 -18.95 14.71 5.20 0.08 -18.88 16 14 C -0.55 -15.51 9.54 -35.63 -0.34 -15.85 16 15 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 16 C 0.09 2.49 5.49 -17.37 -0.10 2.40 16 17 N -0.77 -23.40 11.85 55.55 0.66 -22.74 16 18 Si 0.90 20.30 29.56 -169.99 -5.03 15.27 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.18 2.37 8.06 -52.49 -0.42 1.94 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.37 7.19 8.58 -40.82 -0.35 6.84 16 33 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -36.79 292.15 -5.31 -42.10 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.52 Total: 6.62 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.75 Total: 1.04 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.51 Total: -50.56 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.08 Total: -18.88 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -36.79 -5.31 -42.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627700080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.347 kcal (2) G-P(sol) polarization free energy of solvation -36.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds