Wall clock time and date at job start Thu Apr 9 2020 12:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47003 * 2 1 4 4 C 1.52998 * 109.47013 * 239.99887 * 2 1 3 5 5 C 1.50694 * 109.47189 * 174.99832 * 4 2 1 6 6 C 1.39866 * 126.04243 * 269.69095 * 5 4 2 7 7 N 1.30838 * 108.20636 * 179.81570 * 6 5 4 8 8 N 1.40084 * 108.20236 * 0.44335 * 7 6 5 9 9 C 1.46498 * 126.04023 * 179.69552 * 8 7 6 10 10 C 1.34947 * 107.92645 * 359.71733 * 8 7 6 11 11 N 1.46502 * 109.47175 * 120.00387 * 2 1 3 12 12 C 1.34776 * 119.99355 * 274.99780 * 11 2 1 13 13 O 1.21687 * 120.00526 * 0.02562 * 12 11 2 14 14 C 1.46377 * 119.99584 * 180.02562 * 12 11 2 15 15 H 1.07995 * 120.00263 * 353.93394 * 14 12 11 16 16 C 1.40056 * 119.99695 * 173.93912 * 14 12 11 17 17 N 1.30666 * 120.00082 * 6.15333 * 16 14 12 18 18 Si 1.86799 * 119.99607 * 186.14787 * 16 14 12 19 19 H 1.48498 * 109.46827 * 94.98508 * 18 16 14 20 20 H 1.48501 * 109.47119 * 214.98546 * 18 16 14 21 21 H 1.48500 * 109.47665 * 334.98581 * 18 16 14 22 22 H 1.09003 * 109.47542 * 59.99775 * 1 2 3 23 23 H 1.08999 * 109.47487 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47370 * 299.99983 * 1 2 3 25 25 H 1.09002 * 109.47022 * 54.99630 * 4 2 1 26 26 H 1.09000 * 109.47496 * 295.00229 * 4 2 1 27 27 H 1.08002 * 125.89659 * 0.02562 * 6 5 4 28 28 H 1.09001 * 109.47289 * 270.02710 * 9 8 7 29 29 H 1.09000 * 109.46842 * 30.02064 * 9 8 7 30 30 H 1.09001 * 109.47693 * 150.02087 * 9 8 7 31 31 H 1.08000 * 126.13173 * 180.02562 * 10 8 7 32 32 H 0.96996 * 120.00166 * 94.99840 * 11 2 1 33 33 H 0.96996 * 120.00076 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6149 -1.3128 6 6 4.2690 0.3992 -1.9444 7 7 5.5432 0.1504 -1.7820 8 7 5.6673 -1.0371 -1.0494 9 6 6.9236 -1.6780 -0.6530 10 6 4.4252 -1.4869 -0.7738 11 7 2.0183 -0.6907 1.1961 12 6 2.1471 -0.0183 2.3571 13 8 1.8572 1.1623 2.4119 14 6 2.6355 -0.7082 3.5521 15 1 2.7995 -1.7754 3.5304 16 6 2.8901 0.0157 4.7237 17 7 2.5791 1.2832 4.7891 18 14 3.6742 -0.8307 6.1927 19 1 5.1431 -0.6153 6.1622 20 1 3.1166 -0.2633 7.4467 21 1 3.3861 -2.2865 6.1373 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.6053 -0.2618 -2.1369 26 1 1.7516 -1.7715 -1.2056 27 1 3.8509 1.2438 -2.4720 28 1 7.2363 -2.3761 -1.4295 29 1 7.6924 -0.9173 -0.5173 30 1 6.7770 -2.2173 0.2829 31 1 4.1800 -2.3820 -0.2216 32 1 2.2490 -1.6318 1.1525 33 1 2.7558 1.7846 5.6004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627700080.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:23 Heat of formation + Delta-G solvation = 1.892085 kcal Electronic energy + Delta-G solvation = -16775.674675 eV Core-core repulsion = 14029.732510 eV Total energy + Delta-G solvation = -2745.942165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.04161 -39.49143 -36.61205 -34.57394 -34.04505 -32.25341 -31.01964 -28.45395 -28.10693 -26.10367 -22.98783 -22.03816 -21.24450 -20.85692 -19.09064 -17.63298 -17.41723 -16.50275 -16.18436 -15.91025 -15.33304 -14.99554 -14.62177 -14.35612 -13.92789 -13.87194 -13.52579 -13.28484 -13.22822 -12.93006 -12.71457 -12.64192 -12.47945 -12.29817 -11.99050 -11.74416 -11.38627 -10.91188 -10.28114 -9.74547 -9.34785 -9.12000 -8.24961 -6.78777 1.04424 1.38847 1.40274 1.55728 1.78307 1.93218 2.25397 2.54316 3.28946 3.69977 3.74412 4.07003 4.25149 4.36381 4.39244 4.45148 4.52141 4.67906 4.71259 4.82572 4.96430 5.03462 5.06602 5.24797 5.35663 5.41784 5.52021 5.80657 5.96458 6.23806 6.34331 6.48600 6.80286 6.91907 7.71120 8.58749 8.76980 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.008143 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.645386 B = 3437.728440 C = 4366.495091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.153 3.847 3 H 0.029 0.971 4 C -0.029 4.029 5 C -0.243 4.243 6 C 0.036 3.964 7 N -0.341 5.341 8 N -0.385 5.385 9 C 0.094 3.906 10 C 0.061 3.939 11 N -0.740 5.740 12 C 0.543 3.457 13 O -0.636 6.636 14 C -0.574 4.574 15 H 0.087 0.913 16 C 0.027 3.973 17 N -0.826 5.826 18 Si 0.993 3.007 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.244 1.244 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.014 0.986 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.194 0.806 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.195 0.805 32 H 0.391 0.609 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 -10.647 -10.669 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.047 3.953 3 H 0.048 0.952 4 C -0.068 4.068 5 C -0.254 4.254 6 C -0.149 4.149 7 N -0.164 5.164 8 N -0.167 5.167 9 C -0.046 4.046 10 C -0.085 4.085 11 N -0.393 5.393 12 C 0.346 3.654 13 O -0.524 6.524 14 C -0.611 4.611 15 H 0.105 0.895 16 C -0.188 4.188 17 N -0.456 5.456 18 Si 0.813 3.187 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.167 1.167 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.034 0.966 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.210 0.790 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.212 0.788 32 H 0.225 0.775 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.305 -9.321 -10.761 15.193 hybrid contribution -0.398 -0.322 1.030 1.150 sum 4.908 -9.642 -9.731 14.552 Atomic orbital electron populations 1.22099 0.95933 1.02106 1.00773 1.20648 0.93171 0.95689 0.85770 0.95216 1.20118 0.88535 1.01805 0.96314 1.20243 0.97333 0.98600 1.09266 1.24124 0.90405 1.00090 1.00254 1.77177 1.20471 1.01448 1.17296 1.48718 1.07153 1.18473 1.42395 1.22126 0.82015 0.98079 1.02371 1.22748 0.84292 1.01355 1.00142 1.45722 1.71702 1.12934 1.08977 1.18512 0.77172 0.85948 0.83739 1.90547 1.56694 1.19030 1.86080 1.21439 1.47629 0.96112 0.95908 0.89458 1.26961 0.93806 0.95069 1.02916 1.70213 1.37116 1.10245 1.28000 0.85076 0.78311 0.79624 0.75687 1.19127 1.20068 1.16735 0.90140 0.91161 0.96621 0.88256 0.88995 0.78968 0.88694 0.89847 0.87732 0.78818 0.77539 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 9.48 71.98 0.68 -4.42 16 2 C 0.15 5.71 2.56 44.99 0.12 5.83 16 3 H 0.03 1.37 7.58 -2.39 -0.02 1.36 16 4 C -0.03 -0.76 5.24 29.85 0.16 -0.60 16 5 C -0.24 -7.30 5.10 -20.15 -0.10 -7.40 16 6 C 0.04 1.15 11.96 85.23 1.02 2.17 16 7 N -0.34 -11.70 12.58 -57.02 -0.72 -12.41 16 8 N -0.38 -11.27 4.01 -369.56 -1.48 -12.75 16 9 C 0.09 1.84 11.47 127.77 1.47 3.30 16 10 C 0.06 1.72 11.31 83.54 0.94 2.67 16 11 N -0.74 -32.08 4.70 -446.83 -2.10 -34.18 16 12 C 0.54 31.45 7.71 86.36 0.67 32.11 16 13 O -0.64 -43.40 14.71 -4.31 -0.06 -43.46 16 14 C -0.57 -32.43 9.54 24.83 0.24 -32.19 16 15 H 0.09 4.36 7.85 -2.91 -0.02 4.34 16 16 C 0.03 1.52 5.49 85.31 0.47 1.98 16 17 N -0.83 -51.74 11.85 21.84 0.26 -51.48 16 18 Si 0.99 41.24 29.56 68.60 2.03 43.26 16 19 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 20 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.24 -9.22 7.11 99.48 0.71 -8.51 16 22 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.19 5.12 8.06 -2.91 -0.02 5.09 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.19 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.39 14.24 8.58 -92.71 -0.80 13.45 16 33 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 Total: -1.00 -83.79 292.15 3.89 -79.90 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.31 Total: 27.66 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.65 Total: 3.46 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -4.04 Total: -110.83 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -0.06 Total: -43.46 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -83.79 3.89 -79.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627700080.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.792 kcal (2) G-P(sol) polarization free energy of solvation -83.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds