Wall clock time and date at job start Thu Apr 9 2020 12:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47098 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99775 * 2 1 3 5 5 C 1.50706 * 109.46925 * 185.00035 * 4 2 1 6 6 C 1.39869 * 126.03838 * 269.68782 * 5 4 2 7 7 N 1.30839 * 108.19682 * 179.81855 * 6 5 4 8 8 N 1.40076 * 108.21104 * 0.44367 * 7 6 5 9 9 C 1.46500 * 126.04259 * 179.69087 * 8 7 6 10 10 C 1.34954 * 107.92560 * 359.71809 * 8 7 6 11 11 N 1.46495 * 109.47207 * 240.00179 * 2 1 3 12 12 C 1.34775 * 120.00265 * 84.99638 * 11 2 1 13 13 O 1.21687 * 120.00054 * 0.02562 * 12 11 2 14 14 C 1.46379 * 120.00316 * 180.02562 * 12 11 2 15 15 H 1.08003 * 119.99566 * 359.97438 * 14 12 11 16 16 C 1.40047 * 119.99907 * 179.97438 * 14 12 11 17 17 N 1.30671 * 120.00405 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99701 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47233 * 60.00005 * 18 16 14 20 20 H 1.48497 * 109.47223 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47142 * 300.00137 * 18 16 14 22 22 H 1.08998 * 109.46896 * 59.99816 * 1 2 3 23 23 H 1.08993 * 109.46808 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47032 * 300.00041 * 1 2 3 25 25 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 26 26 H 1.09000 * 109.47312 * 305.00077 * 4 2 1 27 27 H 1.07997 * 125.90256 * 0.02562 * 6 5 4 28 28 H 1.08998 * 109.47171 * 270.02605 * 9 8 7 29 29 H 1.08996 * 109.46629 * 30.02746 * 9 8 7 30 30 H 1.09006 * 109.47033 * 150.02459 * 9 8 7 31 31 H 1.07994 * 126.13138 * 180.02562 * 10 8 7 32 32 H 0.97002 * 119.99826 * 264.99737 * 11 2 1 33 33 H 0.96994 * 120.00159 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.6148 1.3127 6 6 4.4551 -1.5193 0.7607 7 7 5.6634 -1.0881 1.0177 8 7 5.5573 0.1006 1.7510 9 6 6.6732 0.9090 2.2485 10 6 4.2455 0.3695 1.9188 11 7 2.0183 -0.6905 -1.1961 12 6 2.1470 -0.0182 -2.3571 13 8 1.8580 1.1626 -2.4117 14 6 2.6344 -0.7084 -3.5525 15 1 2.8913 -1.7563 -3.5039 16 6 2.7676 -0.0098 -4.7589 17 7 2.4572 1.2582 -4.8175 18 14 3.3889 -0.8907 -6.2845 19 1 2.4721 -2.0103 -6.6175 20 1 3.4391 0.0635 -7.4212 21 1 4.7503 -1.4255 -6.0274 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7517 -1.7715 1.2055 26 1 1.6055 -0.2617 2.1370 27 1 4.2058 -2.4165 0.2139 28 1 6.9511 0.5697 3.2464 29 1 7.5259 0.8028 1.5780 30 1 6.3727 1.9560 2.2913 31 1 3.8314 1.2184 2.4425 32 1 2.2491 -1.6317 -1.1526 33 1 2.5498 1.7420 -5.6531 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627700081.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:25 Heat of formation + Delta-G solvation = 30.028775 kcal Electronic energy + Delta-G solvation = -16705.353960 eV Core-core repulsion = 13960.631893 eV Total energy + Delta-G solvation = -2744.722067 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88371 -37.53487 -34.86824 -32.93428 -32.29603 -30.81445 -29.37051 -27.41517 -25.97835 -24.92657 -21.27100 -20.86699 -19.90341 -19.08245 -17.13133 -16.50253 -15.28661 -15.23281 -14.68843 -14.28414 -13.98966 -13.62124 -12.96057 -12.89938 -12.55366 -12.47967 -12.21687 -12.00202 -11.59518 -11.47692 -11.07573 -10.91097 -10.83123 -10.35519 -10.24589 -10.14834 -10.13253 -9.11608 -8.76273 -8.00988 -7.48199 -7.32224 -6.08870 -4.53395 2.17596 2.78066 3.16526 3.21212 3.25514 3.27685 4.18234 4.68066 4.70167 4.96451 5.09786 5.15239 5.33850 5.41331 5.49169 5.66925 5.75774 5.92348 6.03853 6.12914 6.20127 6.35133 6.37424 6.45431 6.84653 6.93857 7.03717 7.27922 7.52034 7.99564 8.07158 8.27849 8.45798 9.12285 9.69660 10.71014 10.92077 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.007289 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.055977 B = 3840.477911 C = 4520.154317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.071 0.929 4 C -0.047 4.047 5 C -0.217 4.217 6 C 0.064 3.936 7 N -0.302 5.302 8 N -0.383 5.383 9 C 0.106 3.894 10 C 0.048 3.952 11 N -0.756 5.756 12 C 0.559 3.441 13 O -0.583 6.583 14 C -0.546 4.546 15 H 0.065 0.935 16 C 0.089 3.911 17 N -0.771 5.771 18 Si 0.904 3.096 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.061 0.939 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.179 0.821 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.168 0.832 32 H 0.377 0.623 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -3.090 13.466 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.050 3.950 3 H 0.089 0.911 4 C -0.086 4.086 5 C -0.228 4.228 6 C -0.122 4.122 7 N -0.124 5.124 8 N -0.165 5.165 9 C -0.036 4.036 10 C -0.097 4.097 11 N -0.410 5.410 12 C 0.362 3.638 13 O -0.466 6.466 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.131 4.131 17 N -0.400 5.400 18 Si 0.729 3.271 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.194 1.194 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.196 0.804 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.185 0.815 32 H 0.208 0.792 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.332 -2.137 13.236 14.090 hybrid contribution -0.398 -0.628 -0.716 1.032 sum 3.935 -2.765 12.520 13.411 Atomic orbital electron populations 1.22198 0.97307 1.00897 1.01350 1.20484 0.92161 0.97326 0.85070 0.91074 1.20236 0.89268 1.01065 0.98015 1.20011 0.96709 0.98133 1.07948 1.23710 0.89542 1.00092 0.98852 1.77288 1.22769 0.97796 1.14505 1.48324 1.05193 1.19797 1.43226 1.21747 0.88403 0.93841 0.99599 1.22221 0.84078 1.00647 1.02769 1.46068 1.72909 1.12527 1.09483 1.18123 0.77593 0.86315 0.81722 1.90578 1.54917 1.16482 1.84653 1.20866 1.46851 0.97056 0.93517 0.91685 1.25679 0.93350 0.94425 0.99605 1.70015 1.35683 1.08170 1.26137 0.86500 0.79908 0.79748 0.80959 1.19312 1.20668 1.19374 0.92037 0.93439 0.93502 0.91291 0.91178 0.80400 0.91285 0.89568 0.89802 0.81465 0.79235 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.48 37.16 0.35 -2.42 16 2 C 0.16 2.96 2.56 -67.93 -0.17 2.78 16 3 H 0.07 1.57 7.58 -51.93 -0.39 1.18 16 4 C -0.05 -0.67 5.24 -27.88 -0.15 -0.82 16 5 C -0.22 -3.41 5.09 -105.05 -0.53 -3.95 16 6 C 0.06 1.07 11.92 -17.36 -0.21 0.86 16 7 N -0.30 -5.32 12.57 30.62 0.39 -4.93 16 8 N -0.38 -5.73 4.01 -68.16 -0.27 -6.01 16 9 C 0.11 1.06 11.47 59.85 0.69 1.75 16 10 C 0.05 0.70 11.40 -17.22 -0.20 0.50 16 11 N -0.76 -16.87 4.75 -55.22 -0.26 -17.13 16 12 C 0.56 16.09 7.71 -12.99 -0.10 15.99 16 13 O -0.58 -19.09 14.68 5.20 0.08 -19.02 16 14 C -0.55 -15.78 9.54 -35.63 -0.34 -16.12 16 15 H 0.06 1.73 7.85 -52.48 -0.41 1.31 16 16 C 0.09 2.54 5.50 -17.37 -0.10 2.45 16 17 N -0.77 -23.72 11.83 55.55 0.66 -23.06 16 18 Si 0.90 20.78 29.56 -169.99 -5.02 15.76 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.18 2.60 8.06 -52.49 -0.42 2.18 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.38 7.48 8.58 -40.82 -0.35 7.13 16 33 H 0.27 7.48 8.29 -40.82 -0.34 7.14 16 LS Contribution 292.20 15.07 4.40 4.40 Total: -1.00 -37.24 292.20 -5.31 -42.55 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.52 Total: 6.40 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.75 Total: 1.03 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.51 Total: -51.13 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.08 Total: -19.02 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -37.24 -5.31 -42.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627700081.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.581 kcal (2) G-P(sol) polarization free energy of solvation -37.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds