Wall clock time and date at job start Thu Apr 9 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47338 * 2 1 4 4 N 1.46502 * 109.46953 * 119.99834 * 2 1 3 5 5 C 1.35402 * 126.43971 * 300.00154 * 4 2 1 6 6 C 1.35565 * 107.15933 * 180.02562 * 5 4 2 7 7 N 1.33104 * 108.35103 * 359.76859 * 6 5 4 8 8 C 1.31614 * 109.09055 * 0.38111 * 7 6 5 9 9 C 1.47416 * 125.86063 * 179.89106 * 8 7 6 10 10 O 1.21609 * 120.00034 * 179.68480 * 9 8 7 11 11 N 1.34773 * 119.99876 * 359.68865 * 9 8 7 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47148 * 179.72251 * 12 11 9 14 14 H 1.08002 * 120.00318 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99922 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99801 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99967 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47280 * 89.99544 * 17 15 13 19 19 H 1.48504 * 109.46876 * 209.99818 * 17 15 13 20 20 H 1.48502 * 109.46730 * 329.99316 * 17 15 13 21 21 H 1.09008 * 109.46907 * 299.99997 * 1 2 3 22 22 H 1.08998 * 109.46807 * 59.99815 * 1 2 3 23 23 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46906 * 240.00013 * 2 1 3 25 25 H 1.08991 * 109.47031 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46870 * 300.00151 * 3 2 1 27 27 H 1.08998 * 109.46922 * 59.99377 * 3 2 1 28 28 H 1.07995 * 126.42019 * 0.02562 * 5 4 2 29 29 H 1.08001 * 125.82676 * 180.02562 * 6 5 4 30 30 H 0.97005 * 120.00161 * 359.72172 * 11 9 8 31 31 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 32 32 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 33 33 H 0.97005 * 119.99977 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7729 -0.3435 2.4818 6 6 2.4109 -1.2448 3.2682 7 7 3.0272 -2.1246 2.4822 8 6 2.8077 -1.8059 1.2243 9 6 3.3198 -2.5313 0.0476 10 8 3.0451 -2.1446 -1.0722 11 7 4.0925 -3.6231 0.2128 12 6 4.6020 -4.3437 -0.9567 13 6 5.4376 -5.5123 -0.5018 14 1 5.5758 -5.6994 0.5529 15 6 6.0258 -6.3428 -1.4321 16 7 6.7555 -7.3624 -1.0351 17 14 5.7874 -6.0188 -3.2563 18 1 6.8642 -5.1202 -3.7444 19 1 5.8409 -7.3041 -3.9984 20 1 4.4675 -5.3748 -3.4763 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.1800 0.4943 2.8177 29 1 2.4147 -1.2506 4.3482 30 1 4.3150 -3.9293 1.1059 31 1 3.7648 -4.7059 -1.5533 32 1 5.2137 -3.6722 -1.5591 33 1 7.1696 -7.9465 -1.6896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634246564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:27 Heat of formation + Delta-G solvation = 17.370340 kcal Electronic energy + Delta-G solvation = -16602.709295 eV Core-core repulsion = 13857.438318 eV Total energy + Delta-G solvation = -2745.270978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.19211 -38.64265 -36.19106 -34.34165 -32.37733 -30.88253 -29.92209 -27.78673 -27.55544 -23.83047 -22.67089 -21.62093 -20.42760 -19.63411 -17.80405 -16.63612 -15.70392 -15.67515 -15.30222 -14.73349 -14.25788 -14.22802 -13.91754 -13.69909 -13.17887 -13.02804 -12.57068 -12.44156 -12.34748 -12.19268 -11.64818 -11.39093 -10.98921 -10.78096 -10.05836 -9.98016 -9.72153 -9.54920 -9.45213 -8.78659 -8.53349 -8.13786 -6.19036 -4.21592 1.61281 2.59123 2.82391 3.27149 3.33862 3.40800 3.80461 3.85324 4.34038 4.45334 4.63405 4.72118 4.98428 5.03296 5.15431 5.22893 5.27860 5.42154 5.42916 5.54113 5.66512 5.80561 5.88831 6.36440 6.68743 6.75626 7.02623 7.04809 7.13254 7.35221 7.89398 8.18165 8.49685 8.70642 8.85389 9.39482 10.92948 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036511 B = 0.005914 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.715209 B = 4733.567593 C = 5309.205290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C -0.158 4.158 4 N -0.409 5.409 5 C -0.039 4.039 6 C -0.031 4.031 7 N -0.447 5.447 8 C 0.153 3.847 9 C 0.590 3.410 10 O -0.561 6.561 11 N -0.673 5.673 12 C 0.220 3.780 13 C -0.544 4.544 14 H 0.083 0.917 15 C 0.079 3.921 16 N -0.890 5.890 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.261 1.261 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.138 0.862 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.176 0.824 29 H 0.174 0.826 30 H 0.410 0.590 31 H 0.030 0.970 32 H 0.025 0.975 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.779 16.576 4.311 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.000 4.000 3 C -0.215 4.215 4 N -0.090 5.090 5 C -0.177 4.177 6 C -0.185 4.185 7 N -0.168 5.168 8 C -0.108 4.108 9 C 0.373 3.627 10 O -0.441 6.441 11 N -0.320 5.320 12 C 0.099 3.901 13 C -0.582 4.582 14 H 0.101 0.899 15 C -0.125 4.125 16 N -0.528 5.528 17 Si 0.702 3.298 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.185 1.185 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.156 0.844 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.193 0.807 29 H 0.191 0.809 30 H 0.246 0.754 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.399 16.017 3.488 19.967 hybrid contribution -0.455 0.686 -0.552 0.991 sum -11.854 16.704 2.936 20.692 Atomic orbital electron populations 1.22132 0.93288 1.03225 1.02894 1.22084 0.95496 0.94388 0.87998 1.22130 1.02355 0.94164 1.02896 1.45398 1.35530 1.21069 1.07018 1.22704 1.07265 1.04227 0.83520 1.22380 1.01710 0.94482 0.99882 1.70261 1.21214 1.26022 0.99296 1.22994 1.01765 0.91779 0.94225 1.16589 0.79732 0.81176 0.85207 1.90661 1.60975 1.68177 1.24283 1.45971 1.47453 1.25782 1.12770 1.19625 0.94617 0.91776 0.84101 1.21082 1.31182 1.09868 0.96061 0.89911 1.24777 0.94147 0.94436 0.99153 1.69881 1.32227 1.15892 1.34755 0.86834 0.79803 0.78084 0.85053 1.19819 1.20849 1.18516 0.92114 0.90369 0.91681 0.84447 0.91678 0.90378 0.92107 0.80721 0.80881 0.75424 0.95247 0.95704 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.25 37.16 0.34 -1.13 16 2 C 0.10 1.23 3.50 -67.93 -0.24 0.99 16 3 C -0.16 -1.47 9.25 37.16 0.34 -1.13 16 4 N -0.41 -5.82 2.62 -107.50 -0.28 -6.10 16 5 C -0.04 -0.46 10.53 -16.93 -0.18 -0.64 16 6 C -0.03 -0.42 11.85 -17.96 -0.21 -0.63 16 7 N -0.45 -7.76 10.90 -11.25 -0.12 -7.88 16 8 C 0.15 2.73 7.78 -154.52 -1.20 1.53 16 9 C 0.59 12.28 7.81 -12.53 -0.10 12.18 16 10 O -0.56 -12.39 14.36 5.27 0.08 -12.31 16 11 N -0.67 -14.87 5.55 -62.57 -0.35 -15.22 16 12 C 0.22 5.51 4.50 -5.19 -0.02 5.49 16 13 C -0.54 -15.23 9.83 -34.44 -0.34 -15.56 16 14 H 0.08 2.44 7.84 -52.49 -0.41 2.03 16 15 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 16 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 17 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 21 H 0.06 0.47 7.95 -51.92 -0.41 0.06 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.14 2.05 5.35 -51.93 -0.28 1.77 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.47 7.95 -51.93 -0.41 0.06 16 28 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.41 8.71 8.00 -40.82 -0.33 8.38 16 31 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 32 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 33 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 284.22 15.07 4.28 4.28 Total: -1.00 -32.10 284.22 -6.30 -38.40 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.31 Total: 4.81 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.70 Total: 3.25 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.02 Total: -55.11 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.10 -6.30 -38.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634246564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.770 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds