Wall clock time and date at job start Thu Apr 9 2020 12:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47338 * 2 1 4 4 N 1.46502 * 109.46953 * 119.99834 * 2 1 3 5 5 C 1.35402 * 126.43971 * 300.00154 * 4 2 1 6 6 C 1.35565 * 107.15933 * 180.02562 * 5 4 2 7 7 N 1.33104 * 108.35103 * 359.76859 * 6 5 4 8 8 C 1.31614 * 109.09055 * 0.38111 * 7 6 5 9 9 C 1.47416 * 125.86063 * 179.89106 * 8 7 6 10 10 O 1.21609 * 120.00034 * 179.68480 * 9 8 7 11 11 N 1.34773 * 119.99876 * 359.68865 * 9 8 7 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47148 * 179.72251 * 12 11 9 14 14 H 1.08002 * 120.00318 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99922 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99801 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99967 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47280 * 89.99544 * 17 15 13 19 19 H 1.48504 * 109.46876 * 209.99818 * 17 15 13 20 20 H 1.48502 * 109.46730 * 329.99316 * 17 15 13 21 21 H 1.09008 * 109.46907 * 299.99997 * 1 2 3 22 22 H 1.08998 * 109.46807 * 59.99815 * 1 2 3 23 23 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46906 * 240.00013 * 2 1 3 25 25 H 1.08991 * 109.47031 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46870 * 300.00151 * 3 2 1 27 27 H 1.08998 * 109.46922 * 59.99377 * 3 2 1 28 28 H 1.07995 * 126.42019 * 0.02562 * 5 4 2 29 29 H 1.08001 * 125.82676 * 180.02562 * 6 5 4 30 30 H 0.97005 * 120.00161 * 359.72172 * 11 9 8 31 31 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 32 32 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 33 33 H 0.97005 * 119.99977 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7729 -0.3435 2.4818 6 6 2.4109 -1.2448 3.2682 7 7 3.0272 -2.1246 2.4822 8 6 2.8077 -1.8059 1.2243 9 6 3.3198 -2.5313 0.0476 10 8 3.0451 -2.1446 -1.0722 11 7 4.0925 -3.6231 0.2128 12 6 4.6020 -4.3437 -0.9567 13 6 5.4376 -5.5123 -0.5018 14 1 5.5758 -5.6994 0.5529 15 6 6.0258 -6.3428 -1.4321 16 7 6.7555 -7.3624 -1.0351 17 14 5.7874 -6.0188 -3.2563 18 1 6.8642 -5.1202 -3.7444 19 1 5.8409 -7.3041 -3.9984 20 1 4.4675 -5.3748 -3.4763 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.1800 0.4943 2.8177 29 1 2.4147 -1.2506 4.3482 30 1 4.3150 -3.9293 1.1059 31 1 3.7648 -4.7059 -1.5533 32 1 5.2137 -3.6722 -1.5591 33 1 7.1696 -7.9465 -1.6896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634246564.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:27 Heat of formation + Delta-G solvation = -5.432879 kcal Electronic energy + Delta-G solvation = -16603.698117 eV Core-core repulsion = 13857.438318 eV Total energy + Delta-G solvation = -2746.259799 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.32277 -40.29560 -37.19700 -36.17125 -34.45580 -31.93029 -31.28181 -29.60014 -28.26232 -25.38470 -23.83171 -23.25176 -21.70876 -21.04209 -19.32682 -18.31023 -17.17119 -17.06286 -16.94503 -16.05499 -15.77458 -15.64019 -14.98378 -14.86771 -14.61068 -14.36977 -14.23735 -13.92060 -13.22643 -13.18716 -13.10645 -12.71067 -12.47899 -12.26452 -11.92548 -11.70613 -11.25448 -11.01478 -10.93318 -10.81922 -10.15285 -9.47006 -8.40304 -6.49072 0.34861 1.34134 1.34515 1.46900 1.48842 1.66417 2.27955 2.39425 2.41212 2.94285 3.38686 3.60406 3.86360 3.91360 4.16672 4.40507 4.42088 4.61326 4.64677 4.69484 4.74727 4.86624 4.96133 5.03237 5.17174 5.20119 5.31149 5.39781 5.68467 5.96544 6.04599 6.48401 6.59805 6.90741 7.07444 7.20640 8.74908 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.036511 B = 0.005914 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.715209 B = 4733.567593 C = 5309.205290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.093 3.907 3 C -0.150 4.150 4 N -0.403 5.403 5 C -0.004 4.004 6 C -0.048 4.048 7 N -0.470 5.470 8 C 0.101 3.899 9 C 0.591 3.409 10 O -0.581 6.581 11 N -0.683 5.683 12 C 0.235 3.765 13 C -0.553 4.553 14 H 0.053 0.947 15 C 0.027 3.973 16 N -0.931 5.931 17 Si 0.943 3.057 18 H -0.262 1.262 19 H -0.271 1.271 20 H -0.256 1.256 21 H 0.087 0.913 22 H 0.098 0.902 23 H 0.043 0.957 24 H 0.101 0.899 25 H 0.043 0.957 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.229 0.771 29 H 0.206 0.794 30 H 0.411 0.589 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.666 19.290 4.550 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.008 4.008 3 C -0.208 4.208 4 N -0.083 5.083 5 C -0.143 4.143 6 C -0.201 4.201 7 N -0.193 5.193 8 C -0.156 4.156 9 C 0.377 3.623 10 O -0.462 6.462 11 N -0.330 5.330 12 C 0.112 3.888 13 C -0.591 4.591 14 H 0.071 0.929 15 C -0.174 4.174 16 N -0.569 5.569 17 Si 0.765 3.235 18 H -0.187 1.187 19 H -0.196 1.196 20 H -0.180 1.180 21 H 0.105 0.895 22 H 0.117 0.883 23 H 0.062 0.938 24 H 0.119 0.881 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.245 0.755 29 H 0.222 0.778 30 H 0.247 0.753 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.291 18.739 3.713 23.272 hybrid contribution 0.067 -0.067 -0.462 0.471 sum -13.224 18.672 3.252 23.111 Atomic orbital electron populations 1.22114 0.90822 1.02578 1.05242 1.22249 0.97354 0.95224 0.86004 1.22111 1.01001 0.92403 1.05240 1.45642 1.34163 1.19821 1.08711 1.23558 1.04966 1.04007 0.81806 1.23073 1.01555 0.94133 1.01385 1.70176 1.21924 1.27548 0.99641 1.22229 1.05664 0.94405 0.93280 1.16915 0.78712 0.80476 0.86214 1.90640 1.61494 1.68585 1.25496 1.45815 1.48660 1.26717 1.11855 1.19248 0.93746 0.90863 0.84982 1.21249 1.31781 1.11105 0.94946 0.92858 1.25648 0.93627 0.94009 1.04089 1.69994 1.33299 1.16983 1.36670 0.85786 0.80083 0.78548 0.79058 1.18702 1.19610 1.18015 0.89462 0.88334 0.93788 0.88078 0.93766 0.88345 0.89459 0.75493 0.77756 0.75295 0.95950 0.96065 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.25 71.98 0.67 -1.67 16 2 C 0.09 2.06 3.50 44.99 0.16 2.22 16 3 C -0.15 -2.33 9.25 71.98 0.67 -1.67 16 4 N -0.40 -10.71 2.62 -494.02 -1.29 -12.00 16 5 C 0.00 -0.08 10.53 83.52 0.88 0.80 16 6 C -0.05 -1.15 11.85 83.88 0.99 -0.16 16 7 N -0.47 -16.15 10.90 -189.52 -2.06 -18.22 16 8 C 0.10 3.64 7.78 136.28 1.06 4.70 16 9 C 0.59 25.45 7.81 86.66 0.68 26.13 16 10 O -0.58 -26.50 14.36 -4.06 -0.06 -26.55 16 11 N -0.68 -31.53 5.55 -470.11 -2.61 -34.14 16 12 C 0.23 12.08 4.50 85.63 0.38 12.46 16 13 C -0.55 -32.10 9.83 25.60 0.25 -31.85 16 14 H 0.05 3.32 7.84 -2.91 -0.02 3.30 16 15 C 0.03 1.55 5.47 84.66 0.46 2.01 16 16 N -0.93 -57.00 13.96 21.45 0.30 -56.70 16 17 Si 0.94 44.38 27.47 68.60 1.88 46.26 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.26 -11.79 6.54 99.48 0.65 -11.14 16 21 H 0.09 0.90 7.95 -2.38 -0.02 0.89 16 22 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 24 H 0.10 3.04 5.35 -2.39 -0.01 3.03 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 0.90 7.95 -2.39 -0.02 0.88 16 28 H 0.23 1.89 8.06 -2.91 -0.02 1.86 16 29 H 0.21 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.41 18.50 8.00 -92.70 -0.74 17.75 16 31 H 0.02 1.19 7.20 -2.39 -0.02 1.17 16 32 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 33 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -72.82 284.22 2.68 -70.15 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.32 Total: 18.22 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.20 Total: 12.98 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -5.67 Total: -121.06 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.06 Total: -26.55 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -72.82 2.68 -70.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634246564.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.713 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds