Wall clock time and date at job start Thu Apr 9 2020 12:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47129 * 2 1 4 4 C 1.47200 * 109.47048 * 239.99499 * 2 1 3 5 5 N 2.60802 * 109.47066 * 239.99821 * 2 1 3 6 6 C 1.50705 * 109.47119 * 119.99934 * 2 1 3 7 7 O 1.21277 * 119.99744 * 119.99720 * 6 2 1 8 8 N 1.34774 * 119.99749 * 300.00194 * 6 2 1 9 9 C 1.46497 * 119.99885 * 180.02562 * 8 6 2 10 10 H 1.09003 * 110.64293 * 36.68694 * 9 8 6 11 11 C 1.55155 * 110.72453 * 160.02249 * 9 8 6 12 12 C 1.55124 * 101.48678 * 82.69285 * 11 9 8 13 13 N 1.47424 * 104.72207 * 37.30199 * 12 11 9 14 14 C 1.36932 * 125.65125 * 155.82185 * 13 12 11 15 15 H 1.07998 * 120.00011 * 199.40981 * 14 13 12 16 16 C 1.38812 * 119.99864 * 19.39910 * 14 13 12 17 17 N 1.31612 * 120.00174 * 28.45918 * 16 14 13 18 18 Si 1.86805 * 120.00061 * 208.45088 * 16 14 13 19 19 H 1.48497 * 109.47017 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47317 * 300.00639 * 18 16 14 21 21 H 1.48505 * 109.46985 * 60.00660 * 18 16 14 22 22 C 1.47023 * 108.70138 * 335.54847 * 13 12 11 23 23 H 1.09001 * 109.46922 * 300.00275 * 1 2 3 24 24 H 1.09002 * 109.47115 * 59.99935 * 1 2 3 25 25 H 1.08999 * 109.47129 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00313 * 359.97438 * 8 6 2 27 27 H 1.08995 * 111.00634 * 200.93890 * 11 9 8 28 28 H 1.09003 * 111.00385 * 324.74696 * 11 9 8 29 29 H 1.09001 * 110.50102 * 278.45549 * 12 11 9 30 30 H 1.09010 * 110.34257 * 156.06372 * 12 11 9 31 31 H 0.96999 * 119.99939 * 5.64810 * 17 16 14 32 32 H 1.08998 * 109.87770 * 120.70458 * 22 13 12 33 33 H 1.08996 * 109.88326 * 241.71759 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3993 -1.2295 -2.1294 6 6 2.0324 -0.7104 1.2305 7 8 2.7296 -1.6965 1.1192 8 7 1.7067 -0.2499 2.4546 9 6 2.1955 -0.9402 3.6507 10 1 3.2069 -1.3144 3.4922 11 6 2.1402 -0.0034 4.8863 12 6 0.6579 -0.1506 5.3195 13 7 0.3362 -1.5690 5.0784 14 6 -0.6487 -2.2822 5.7080 15 1 -0.6170 -3.3617 5.7091 16 6 -1.6876 -1.6176 6.3450 17 7 -2.0689 -0.4317 5.9201 18 14 -2.5448 -2.4065 7.8053 19 1 -3.6114 -1.5004 8.3018 20 1 -3.1476 -3.6976 7.3873 21 1 -1.5571 -2.6487 8.8875 22 6 1.2438 -2.0892 4.0453 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.1494 0.5389 2.5436 27 1 2.8156 -0.3487 5.6690 28 1 2.3638 1.0261 4.6065 29 1 0.0178 0.4917 4.7146 30 1 0.5465 0.0892 6.3770 31 1 -1.6809 -0.0578 5.1135 32 1 1.8179 -2.9258 4.4435 33 1 0.6702 -2.4132 3.1770 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713081198.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:06:28 Heat of formation + Delta-G solvation = -15.174565 kcal Electronic energy + Delta-G solvation = -16804.669442 eV Core-core repulsion = 14057.987212 eV Total energy + Delta-G solvation = -2746.682231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.32690 -39.23480 -37.64668 -35.72566 -34.59659 -33.25685 -30.83049 -29.05653 -26.42238 -26.05381 -22.91558 -22.07897 -21.35875 -19.57758 -19.04402 -18.33710 -17.08250 -16.46913 -16.35886 -15.69535 -15.46983 -15.15584 -15.00422 -14.76454 -14.15179 -13.89162 -13.73938 -13.55780 -13.27435 -12.82873 -12.61622 -12.57624 -12.45246 -12.39683 -12.21511 -11.93189 -11.86169 -11.55006 -10.96558 -10.48452 -10.17505 -8.96444 -8.29612 -5.32120 1.36717 1.46271 1.60695 1.66693 1.69030 1.86469 2.28471 2.65362 2.77601 3.20381 3.52401 3.64431 3.73707 3.90383 3.97050 4.15044 4.23479 4.52313 4.58903 4.77156 4.80004 4.86051 4.93319 4.99806 5.11900 5.23453 5.33096 5.50645 5.71869 6.35842 6.38487 6.52651 6.95658 7.13153 7.72531 8.31064 9.02366 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037656 B = 0.005868 C = 0.005609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.387482 B = 4770.738170 C = 4990.388491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.002 3.998 3 H 0.197 0.803 4 C 0.244 3.756 5 N -0.473 5.473 6 C 0.522 3.478 7 O -0.583 6.583 8 N -0.693 5.693 9 C 0.147 3.853 10 H 0.101 0.899 11 C -0.120 4.120 12 C 0.142 3.858 13 N -0.620 5.620 14 C -0.354 4.354 15 H 0.046 0.954 16 C -0.066 4.066 17 N -0.935 5.935 18 Si 1.110 2.890 19 H -0.287 1.287 20 H -0.281 1.281 21 H -0.283 1.283 22 C 0.123 3.877 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.045 0.955 26 H 0.418 0.582 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.024 0.976 30 H 0.022 0.978 31 H 0.260 0.740 32 H 0.021 0.979 33 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 8.347 -6.463 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 H 0.213 0.787 4 C -0.074 4.074 5 N -0.149 5.149 6 C 0.308 3.692 7 O -0.462 6.462 8 N -0.344 5.344 9 C 0.041 3.959 10 H 0.119 0.881 11 C -0.159 4.159 12 C 0.017 3.983 13 N -0.347 5.347 14 C -0.483 4.483 15 H 0.063 0.937 16 C -0.263 4.263 17 N -0.577 5.577 18 Si 0.935 3.065 19 H -0.213 1.213 20 H -0.208 1.208 21 H -0.209 1.209 22 C -0.003 4.003 23 H 0.119 0.881 24 H 0.123 0.877 25 H 0.065 0.935 26 H 0.256 0.744 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 5.986 7.012 -6.726 11.412 hybrid contribution 0.559 -0.373 -0.818 1.059 sum 6.545 6.638 -7.544 11.993 Atomic orbital electron populations 1.21870 0.88114 1.03608 1.06529 1.19106 0.99537 1.01649 0.81897 0.78666 1.28771 0.92156 0.92628 0.93864 1.81175 1.09869 1.09530 1.14319 1.20553 0.79501 0.84010 0.85176 1.90764 1.40173 1.28050 1.87262 1.45721 1.52747 1.31890 1.04092 1.21742 0.96963 0.92427 0.84779 0.88098 1.23077 0.96108 1.00721 0.95947 1.21620 0.93763 0.85219 0.97669 1.44761 1.37298 1.09277 1.43405 1.19898 1.03855 0.91075 1.33426 0.93657 1.26948 0.95638 0.98171 1.05589 1.70900 1.41174 1.20824 1.24771 0.82908 0.75218 0.74558 0.73801 1.21298 1.20754 1.20895 1.21807 0.92005 0.96013 0.90513 0.88150 0.87673 0.93539 0.74369 0.89330 0.86673 0.95827 0.95998 0.92957 0.96067 0.97620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.04 71.98 0.65 -1.30 16 2 C 0.00 0.03 3.10 -13.34 -0.04 -0.01 16 3 H 0.20 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.24 5.96 13.88 89.44 1.24 7.20 16 5 N -0.47 -14.63 18.54 20.01 0.37 -14.26 16 6 C 0.52 13.02 7.14 87.66 0.63 13.65 16 7 O -0.58 -20.67 15.75 -3.02 -0.05 -20.72 16 8 N -0.69 -16.21 5.01 -436.92 -2.19 -18.40 16 9 C 0.15 4.37 3.25 46.18 0.15 4.52 16 10 H 0.10 2.95 7.69 -2.39 -0.02 2.93 16 11 C -0.12 -3.32 6.65 32.06 0.21 -3.10 16 12 C 0.14 5.76 5.36 86.93 0.47 6.23 16 13 N -0.62 -30.06 3.26 -691.55 -2.26 -32.32 16 14 C -0.35 -19.86 10.00 84.03 0.84 -19.02 16 15 H 0.05 2.63 7.97 -2.91 -0.02 2.60 16 16 C -0.07 -3.66 5.10 84.86 0.43 -3.22 16 17 N -0.93 -53.88 13.01 21.65 0.28 -53.60 16 18 Si 1.11 50.01 30.00 68.60 2.06 52.06 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 C 0.12 5.11 6.98 86.73 0.61 5.72 16 23 H 0.10 1.15 7.56 -2.39 -0.02 1.13 16 24 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.42 7.35 8.04 -92.71 -0.75 6.60 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.02 0.98 6.80 -2.39 -0.02 0.96 16 30 H 0.02 1.00 8.08 -2.38 -0.02 0.98 16 31 H 0.26 14.79 6.19 -92.71 -0.57 14.21 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.01 0.26 8.05 -2.39 -0.02 0.24 16 Total: -1.00 -77.65 286.63 3.98 -73.67 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 0.57 Total: 2.90 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.18 Total: 10.66 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -3.79 Total: -118.58 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.06 Total: 52.06 kcal Total: -77.65 3.98 -73.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713081198.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.496 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds