Wall clock time and date at job start Thu Apr 9 2020 12:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 O 1.21288 * 120.00038 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00369 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00115 * 179.97438 * 14 12 11 16 16 C 1.52998 * 119.29855 * 250.22954 * 15 14 12 17 17 C 1.52999 * 60.37915 * 248.69604 * 16 15 14 18 18 H 1.08997 * 119.29549 * 111.30548 * 17 16 15 19 19 C 1.54264 * 118.19909 * 266.38635 * 17 16 15 20 20 C 1.54886 * 104.20004 * 87.78824 * 19 17 16 21 21 C 1.54272 * 117.40895 * 44.57629 * 15 14 12 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 26 26 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 27 27 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 28 28 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 29 29 H 0.97003 * 119.99640 * 359.97438 * 14 12 11 30 30 H 1.08995 * 117.46173 * 356.29807 * 16 15 14 31 31 H 1.09000 * 117.45572 * 141.09424 * 16 15 14 32 32 H 1.09001 * 110.48858 * 206.47076 * 19 17 16 33 33 H 1.09004 * 110.48565 * 329.10923 * 19 17 16 34 34 H 1.09002 * 110.75638 * 80.37402 * 20 19 17 35 35 H 1.09000 * 110.76368 * 203.56101 * 20 19 17 36 36 H 1.09002 * 110.48379 * 235.04367 * 21 15 14 37 37 H 1.08999 * 110.48948 * 357.68859 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4596 -6.1325 -0.0018 13 8 3.6521 -5.9109 -0.0022 14 7 2.0105 -7.4032 -0.0019 15 6 2.9625 -8.5167 -0.0031 16 6 3.1050 -9.3786 -1.2592 17 6 2.4834 -9.9790 0.0034 18 1 1.4222 -10.2277 0.0090 19 6 3.4050 -10.7403 0.9785 20 6 3.9484 -9.6408 1.9245 21 6 4.1663 -8.4229 0.9572 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6043 -0.8905 26 1 2.8720 -3.6043 0.8894 27 1 0.8535 -5.0451 0.8886 28 1 0.8539 -5.0446 -0.8913 29 1 1.0568 -7.5805 -0.0012 30 1 2.4384 -9.1639 -2.0944 31 1 4.1077 -9.7082 -1.5314 32 1 2.8366 -11.4809 1.5411 33 1 4.2229 -11.2163 0.4374 34 1 3.2164 -9.3976 2.6947 35 1 4.8920 -9.9497 2.3742 36 1 5.1014 -8.5371 0.4089 37 1 4.1519 -7.4753 1.4955 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597890895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:49 Heat of formation + Delta-G solvation = -36.371451 kcal Electronic energy + Delta-G solvation = -16408.362470 eV Core-core repulsion = 13764.301416 eV Total energy + Delta-G solvation = -2644.061053 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32395 -38.44046 -34.15720 -33.60063 -31.98643 -31.32095 -28.41844 -27.41037 -24.00519 -22.75812 -21.42932 -20.40589 -19.61826 -19.33269 -17.05812 -16.37123 -15.98304 -15.42579 -14.94612 -14.41000 -14.22607 -13.49109 -13.41014 -13.19145 -13.04337 -12.23742 -12.10553 -11.78100 -11.41133 -11.21003 -11.17789 -11.07647 -10.83313 -10.75635 -10.59991 -10.52480 -10.14140 -9.64433 -9.54641 -9.21685 -8.98351 -8.70990 -8.29862 -5.95747 -3.97177 2.90322 3.18041 3.38078 3.41290 3.45311 3.45674 4.28014 4.44692 4.50901 4.65096 4.90793 5.06321 5.15099 5.25338 5.33720 5.40187 5.48045 5.60255 5.64542 5.65249 5.74435 5.74883 5.83631 5.97837 6.13897 6.16353 6.28841 6.66862 6.75389 6.95874 7.18809 7.65116 7.73180 7.85996 8.05000 8.48694 8.51960 9.09745 9.66627 11.15761 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.060933 B = 0.003856 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.412560 B = 7258.754946 C = 7424.185093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.138 4.138 12 C 0.515 3.485 13 O -0.530 6.530 14 N -0.706 5.706 15 C 0.098 3.902 16 C -0.160 4.160 17 C -0.166 4.166 18 H 0.112 0.888 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.084 4.084 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.400 0.600 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -21.901 1.124 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.178 4.178 12 C 0.304 3.696 13 O -0.405 6.405 14 N -0.357 5.357 15 C 0.010 3.990 16 C -0.199 4.199 17 C -0.185 4.185 18 H 0.130 0.870 19 C -0.132 4.132 20 C -0.163 4.163 21 C -0.122 4.122 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.234 0.766 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.756 -21.571 1.143 21.925 hybrid contribution -0.277 0.801 -0.141 0.860 sum 3.479 -20.770 1.002 21.083 Atomic orbital electron populations 1.69953 1.06039 1.26638 1.51171 1.25021 0.94856 0.99238 0.95389 0.86647 0.79567 0.83056 0.78688 1.20224 1.21343 1.20224 1.21242 0.93163 0.91034 1.50224 0.92621 1.19132 0.93977 0.91470 0.97103 1.21439 0.98619 0.91481 1.01688 1.21852 0.98155 0.94078 1.03709 1.21263 0.90496 0.83341 0.74534 1.90663 1.17214 1.84536 1.48120 1.45440 1.08792 1.04686 1.76815 1.21532 0.93887 0.84104 0.99452 1.23573 1.02413 1.01855 0.92056 1.23680 1.00130 0.94936 0.99745 0.87049 1.21940 0.98041 0.97171 0.96020 1.23084 1.00927 0.94570 0.97719 1.22403 0.95220 0.99083 0.95529 0.93023 0.96625 0.96623 0.92702 0.92697 0.89402 0.89421 0.76563 0.88292 0.88489 0.91123 0.91183 0.91308 0.91166 0.90774 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.09 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.14 -2.32 5.70 -27.88 -0.16 -2.48 16 12 C 0.52 8.46 7.54 -10.99 -0.08 8.38 16 13 O -0.53 -10.62 14.05 5.55 0.08 -10.54 16 14 N -0.71 -8.87 5.67 -46.57 -0.26 -9.13 16 15 C 0.10 1.15 2.97 -130.70 -0.39 0.76 16 16 C -0.16 -1.61 10.04 -26.73 -0.27 -1.88 16 17 C -0.17 -1.47 6.94 -89.50 -0.62 -2.09 16 18 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.09 -0.74 6.63 -25.08 -0.17 -0.91 16 20 C -0.13 -1.14 6.96 -23.54 -0.16 -1.30 16 21 C -0.08 -1.02 5.79 -23.87 -0.14 -1.16 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.40 3.89 8.83 -40.82 -0.36 3.52 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.28 6.58 -51.93 -0.34 0.94 16 LS Contribution 305.78 15.07 4.61 4.61 Total: -1.00 -32.87 305.78 -8.68 -41.54 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.16 Total: -0.66 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.66 Total: -16.41 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.47 Total: -35.72 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.87 -8.68 -41.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597890895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.173 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds