Wall clock time and date at job start Thu Apr 9 2020 12:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 O 1.21288 * 120.00038 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00369 * 179.97438 * 12 11 10 15 15 C 1.46505 * 120.00115 * 179.97438 * 14 12 11 16 16 C 1.52998 * 119.29855 * 250.22954 * 15 14 12 17 17 C 1.52999 * 60.37915 * 248.69604 * 16 15 14 18 18 H 1.08997 * 119.29549 * 111.30548 * 17 16 15 19 19 C 1.54264 * 118.19909 * 266.38635 * 17 16 15 20 20 C 1.54886 * 104.20004 * 87.78824 * 19 17 16 21 21 C 1.54272 * 117.40895 * 44.57629 * 15 14 12 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 26 26 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 27 27 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 28 28 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 29 29 H 0.97003 * 119.99640 * 359.97438 * 14 12 11 30 30 H 1.08995 * 117.46173 * 356.29807 * 16 15 14 31 31 H 1.09000 * 117.45572 * 141.09424 * 16 15 14 32 32 H 1.09001 * 110.48858 * 206.47076 * 19 17 16 33 33 H 1.09004 * 110.48565 * 329.10923 * 19 17 16 34 34 H 1.09002 * 110.75638 * 80.37402 * 20 19 17 35 35 H 1.09000 * 110.76368 * 203.56101 * 20 19 17 36 36 H 1.09002 * 110.48379 * 235.04367 * 21 15 14 37 37 H 1.08999 * 110.48948 * 357.68859 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4596 -6.1325 -0.0018 13 8 3.6521 -5.9109 -0.0022 14 7 2.0105 -7.4032 -0.0019 15 6 2.9625 -8.5167 -0.0031 16 6 3.1050 -9.3786 -1.2592 17 6 2.4834 -9.9790 0.0034 18 1 1.4222 -10.2277 0.0090 19 6 3.4050 -10.7403 0.9785 20 6 3.9484 -9.6408 1.9245 21 6 4.1663 -8.4229 0.9572 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6043 -0.8905 26 1 2.8720 -3.6043 0.8894 27 1 0.8535 -5.0451 0.8886 28 1 0.8539 -5.0446 -0.8913 29 1 1.0568 -7.5805 -0.0012 30 1 2.4384 -9.1639 -2.0944 31 1 4.1077 -9.7082 -1.5314 32 1 2.8366 -11.4809 1.5411 33 1 4.2229 -11.2163 0.4374 34 1 3.2164 -9.3976 2.6947 35 1 4.8920 -9.9497 2.3742 36 1 5.1014 -8.5371 0.4089 37 1 4.1519 -7.4753 1.4955 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597890895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:48 Heat of formation + Delta-G solvation = -57.015657 kcal Electronic energy + Delta-G solvation = -16409.257670 eV Core-core repulsion = 13764.301416 eV Total energy + Delta-G solvation = -2644.956253 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32889 -39.57920 -36.11978 -34.71508 -33.96322 -32.18551 -29.90816 -28.62000 -25.89669 -23.60495 -22.81045 -21.67200 -20.80646 -20.38430 -18.61058 -17.84451 -17.39611 -16.73449 -16.47543 -15.87836 -15.33782 -14.94412 -14.53205 -14.22632 -14.10160 -13.93136 -13.73571 -13.18170 -12.89040 -12.61159 -12.51879 -12.43055 -12.06057 -11.92014 -11.85406 -11.67214 -11.55572 -11.43898 -11.27189 -11.06174 -10.54618 -10.50803 -9.70358 -8.20633 -6.30870 1.39192 1.42329 1.50438 1.64655 2.11088 2.41680 2.64512 3.12170 3.50835 3.68583 3.85429 3.87567 4.19579 4.21334 4.26220 4.38133 4.48709 4.59552 4.62824 4.79325 4.86198 4.87695 4.96133 5.00562 5.09653 5.16933 5.18080 5.21807 5.25160 5.43727 5.52669 5.66100 5.74515 5.86123 6.26835 6.58436 6.84310 7.31973 7.37853 8.90764 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.060933 B = 0.003856 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.412560 B = 7258.754946 C = 7424.185093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.026 3.974 10 C -0.081 4.081 11 C -0.129 4.129 12 C 0.517 3.483 13 O -0.574 6.574 14 N -0.687 5.687 15 C 0.059 3.941 16 C -0.161 4.161 17 C -0.136 4.136 18 H 0.132 0.868 19 C -0.091 4.091 20 C -0.119 4.119 21 C -0.089 4.089 22 H 0.265 0.735 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.416 0.584 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 -23.465 1.136 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.119 4.119 11 C -0.169 4.169 12 C 0.305 3.695 13 O -0.453 6.453 14 N -0.338 5.338 15 C -0.028 4.028 16 C -0.200 4.200 17 C -0.155 4.155 18 H 0.149 0.851 19 C -0.129 4.129 20 C -0.156 4.156 21 C -0.128 4.128 22 H 0.074 0.926 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.253 0.747 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.397 -23.183 1.154 23.459 hybrid contribution -0.187 1.249 -0.146 1.271 sum 3.210 -21.935 1.008 22.191 Atomic orbital electron populations 1.70060 1.07514 1.27888 1.51496 1.25915 0.95839 1.03091 0.94628 0.85546 0.78390 0.78327 0.79075 1.19419 1.20290 1.19410 1.21669 0.93346 0.92836 1.50901 0.93071 1.19020 0.94199 0.92390 0.95512 1.21145 0.97599 0.92948 1.00222 1.21674 0.97914 0.91709 1.05606 1.21053 0.89536 0.84480 0.74420 1.90652 1.18809 1.85315 1.50557 1.45178 1.09960 1.03739 1.74922 1.21768 0.94442 0.85217 1.01370 1.23652 1.03044 1.01121 0.92141 1.23850 1.01338 0.91958 0.98311 0.85052 1.21995 0.98373 0.96886 0.95628 1.23051 1.01652 0.93581 0.97326 1.22366 0.95446 0.98826 0.96152 0.92626 0.98080 0.98074 0.94179 0.94146 0.87510 0.87502 0.74705 0.87807 0.88174 0.88971 0.90302 0.91380 0.90084 0.91595 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 45.59 29.54 68.60 2.03 47.61 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.55 -32.80 9.11 25.60 0.23 -32.56 16 8 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.08 -3.64 4.44 30.59 0.14 -3.51 16 11 C -0.13 -4.30 5.70 29.85 0.17 -4.13 16 12 C 0.52 16.97 7.54 87.66 0.66 17.63 16 13 O -0.57 -23.75 14.05 -3.05 -0.04 -23.80 16 14 N -0.69 -16.43 5.67 -419.63 -2.38 -18.81 16 15 C 0.06 1.32 2.97 4.33 0.01 1.33 16 16 C -0.16 -2.90 10.04 30.59 0.31 -2.59 16 17 C -0.14 -1.98 6.94 -10.07 -0.07 -2.05 16 18 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 19 C -0.09 -1.13 6.63 31.67 0.21 -0.92 16 20 C -0.12 -1.95 6.96 32.66 0.23 -1.73 16 21 C -0.09 -2.18 5.79 32.45 0.19 -1.99 16 22 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 23 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 26 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 27 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.42 7.14 8.83 -92.71 -0.82 6.32 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.05 1.60 6.58 -2.39 -0.02 1.58 16 Total: -1.00 -72.20 305.78 2.80 -69.40 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.22 Total: 10.59 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 2.69 Total: -28.33 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -2.09 Total: -75.46 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.04 Total: -23.80 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -72.20 2.80 -69.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597890895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.382 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds